Public record
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-10-19 16:31 UTC

4dn-dcic / snovault

The SnoVault general purpose hybrid object-relational database

PythonCustom license★ 2 stars⑂ 1 forksince Jul 2016View on GitHub ↗
KindCommand-line toolLibraryhow this is determined
#um1da058230

4dn-dcic/snovault holds a health index of 65 out of 100, placing it in the Good band. It scores highest on Engineering Quality (90/100) and lowest on Community & Adoption (30/100). It was last updated today. 3 contributors account for most of its recent work.

65
overall / 100
Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

65
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 60 is calibrated to 65 on the published index scale (record calibration 2026-08-02).

Ownership

4D Nucleome Data Coordination and Integration CenterOrganization
34 followers94 public repossince Nov 2016

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publish
PyPIdcicsnovault11.36.02,03354062 days ago

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

58Moderate · 21% of overall

Development activity

62Moderate
How it's scored
36/36Push recency — last push 0 days ago
8.3/36Commit cadence — 12/52 weeks with commits
14.2/18Commit volume — 37 commits in the last year
4/10OpenSSF Scorecard: Maintained — 5 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 4
Inputs used
commits_last_year37
human_commit_share1
days_since_last_push0
active_weeks_last_year12

Release discipline

52Moderate
How it's scored
27/27Ships releases — 31 releases published
0/36Release recency — latest release 1,994 days ago
19.8/27Release cadence — a release every ~51 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count31
latest_release_tagv4.7.6
releases_from_tagsno
days_since_latest_release1,994
mean_days_between_releases51
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

30At Risk · 17% of overall

Popularity & adoption

3Critical
How it's scored
0/60Stars — 2 stars
0/25Forks — 1 forks
3.3/15Watchers — 5 watchers
Inputs used
forks1
stars2
watchers5
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

44Weak
How it's scored
22.5/22.5README
16.9/22.5License — license file present, not a recognized license
0/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges0
has_contributingno
has_issue_templateno
has_code_of_conductno
readme_badge_services—
has_pull_request_templateno

Ecosystem adoption (downloads)

55Moderate
How it's scored
44.1/80Monthly downloads — 2,033 downloads/month across pypi
0/20Registry dependents — not reported by this ecosystem
Inputs used
packagesdcicsnovault
dependents—
ecosystemspypi
total_downloads—
monthly_downloads2,033
unverified_packages_excluded—
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

76Good · 23% of overall

Maintainer resilience (bus factor)

75Good
How it's scored
36/54Bus factor — 3 contributor(s) cover half of all commits
15.8/22.5Commit distribution — top contributor authored 30% of commits
13.5/13.5Contributor breadth — 28 contributors
10/10OpenSSF Scorecard: Contributors — project has 25 contributing companies or organizations
Inputs used
bus_factor3
contributors_sampled28
top_contributor_share0.299

Issue & PR responsiveness

67Good
How it's scored
0/42Issue resolution — no issues or no data
27.2/30PR acceptance — 296/327 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
3/15OpenSSF Scorecard: Code-Review — Found 6/25 approved changesets -- score normalized to 2
Inputs used
merged_prs296
open_issues0
closed_issues0
prs_merged_7d0
prs_decided_7d0
prs_merged_30d0
prs_decided_30d0
issue_closed_ratio—
closed_unmerged_prs31
first_time_authors_30d0
first_time_prs_merged_30d0
first_time_prs_decided_30d0
Excluded from scoring (no data or not applicable): Issue resolution, Newcomer PR acceptance. Remaining weights renormalized.

Ownership & stewardship

66Good
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
11.1/25Owner reach — 34 followers of 4dn-dcic
25/25Track record — 94 public repos, account ~9 yr old
Inputs used
followers34
owner_typeOrganization
is_verifiedno
owner_login4dn-dcic
public_repos94
account_age_days3,637

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable — 1 package(s) on pypi
35/35Publish recency — latest publish 62 days ago
20/20Version history — 540 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesdcicsnovault
ecosystemspypi
any_deprecatedno
min_days_since_publish62

Engineering Quality

Are baseline engineering and documentation practices in place?

90Excellent · 19% of overall

Engineering practices

84Excellent
How it's scored
24/24CI workflows — 3 workflow(s)
24/24Tests present
16/16Linter config — .flake8
0/9.6Pre-commit hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 24 out of 24 merged PRs checked by a CI test -- score normalized to 10
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configyes
has_precommit_configno

Documentation

100Exceptional
How it's scored
30/30README
25/25Documentation directory
15/15Documentation / homepage site — https://github.com/4dn-dcic/snovault
10/10Repository description
10/10Topics — 1 topics
10/10Wiki
Inputs used
topicsum1da058230
has_wikiyes
homepage—
docs_sitehttps://github.com/4dn-dcic/snovault
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

32At Risk · 16% of overall

Security posture

32At Risk
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — branch protection not enabled on development/release branches
2.5/2.5CI-Tests — 24 out of 24 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
1.5/7.5Code-Review — Found 6/25 approved changesets -- score normalized to 2
2.5/2.5Contributors — project has 25 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.2/2.5License — license file detected
3/7.5Maintained — 5 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 4
0/5Packaging — no data
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — no data
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 100 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate3.2
Excluded from scoring (no data or not applicable): Packaging, Signed-Releases. Remaining weights renormalized.

Dependency advisories

33At Risk
How it's scored
9.5/35Direct dependencies free of known advisories — 1 affected: pillow 11.3.0 (critical 9.1)
3.5/25Indirect dependencies free of known advisories — 4 affected: pyopenssl 24.3.0 (critical 9.8), cryptography 43.0.3 (high 8.2), urllib3 1.26.20 (high 7.5), +1 more
19.8/40No advisories left outstanding — 5 advisory-carrying package(s) unaddressed past 90 days; oldest published 614 days ago
Inputs used
sourceosv
advisories66
affected_packages5
assessed_packages102
unassessed_packages0
affected_by_severitycritical 2, high 2, moderate 1
direct_affected_packages1
Matched the pypi:dcicsnovault@11.36.0 runtime dependency closure — what installing the published package pulls in — 102 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

66Good · 4% of overall

Agent context & guidance

66Good
How it's scored
45/45Agent instructions — AGENTS.md, CLAUDE.md, snovault/search/AGENTS.md, snovault/search/CLAUDE.md
0/15Machine-readable docs (llms.txt)
20.8/40Legible commit history — 39 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
llms_txt_url—
legible_history_share0.39
agent_instruction_filesAGENTS.md, CLAUDE.md, snovault/search/AGENTS.md, snovault/search/CLAUDE.md
agent_instruction_max_bytes29,207

Verify loop (build / test / typecheck)

71Good
How it's scored
18/18One-command bootstrap — Makefile, docs/Makefile
22/22Automated tests
11/11Lint / format config — .flake8
0/11Static type checking
10/10Reproducible environment — lockfile
10/10Demonstrated agent practice — 11 of the last 100 commits agent-authored or agent-credited
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfilespoetry.lock
has_dockerfileno
typed_languageno
bootstrap_filesMakefile, docs/Makefile
has_devcontainerno
has_linter_configyes
typecheck_configs—
agent_commit_share0.11
toolchain_manifests—
dependency_bot_commit_share0

Code legibility for models

54Moderate
How it's scored
0/45Type-checkable code — Python without a type-check config
53.6/55Manageable file sizes — 5/202 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes118,767
source_files_sampled202
oversized_source_files5

Key facts

2GitHub stars
28contributors
37commits, last 12 months
0days since last push
31releases
3bus factor
0open issues
PyPIpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

More detail

OpenSSF Scorecard 3.2 / 10
3.2aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-10-19 16:31 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
10CI-Tests24 out of 24 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
2Code-ReviewFound 6/25 approved changesets -- score normalized to 2
10Contributorsproject has 25 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
9Licenselicense file detected
4Maintained5 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 4
n/aPackagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities100 existing vulnerabilities detected
Direct dependencies 43
RegistryPackageVersion constraintManifest
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PyPIjsonschema^4.19.0pyproject.toml
All dependencies 262

Full resolved dependency set from the GitHub dependency graph: 102 direct and 160 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

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PyPItypes-s3transfer0.13.0indirect
PyPItyping-extensions4.14.1indirect
PyPIuri-template1.3.0indirect
PyPIurllib31.23indirect
PyPIurllib31.26.20indirect
PyPIwaitress1.2.0indirect
PyPIwaitress3.0.2indirect
PyPIwebcolors24.11.1indirect
PyPIwebencodings0.5.1indirect
PyPIwerkzeug3.1.3indirect
PyPIwheel0.45.1indirect
PyPIxlrd—indirect
PyPIxlrd1.0.0indirect
PyPIxmltodict0.14.2indirect
PyPIzc-buildout2.13.2indirect
PyPIzc-recipe-egg2.0.5indirect
Dependency advisories 5

Installing pypi:dcicsnovault@11.36.0 pulls in 102 packages, direct and transitive: 5 carry known advisories, of which 1 are direct dependencies.

PackageVersionRelationSeverityAdvisoriesFixed in
pillow11.3.0directcritical3612.3.0
pyopenssl24.3.0indirectcritical426.0.0
cryptography43.0.3indirecthigh1049.0.0
urllib31.26.20indirecthigh142.8.0
setuptools81.0.0indirectmoderate283.0.0

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.34.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — PyPI.