Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [],
"is_fork": false,
"size_kb": 43445,
"has_wiki": true,
"homepage": null,
"languages": {
"Shell": 422834,
"Python": 170422
},
"pushed_at": "2026-07-23T14:51:31Z",
"created_at": "2018-12-09T05:31:25Z",
"owner_type": "User",
"updated_at": "2026-07-18T06:56:05Z",
"description": "A user-friendly workflow for phylogenomics",
"is_archived": false,
"is_disabled": false,
"license_spdx": "GPL-3.0",
"default_branch": "master",
"license_spdx_raw": "GPL-3.0",
"primary_language": "Shell",
"significant_languages": [
"Shell",
"Python"
]
},
"owner": {
"blog": "microbialomics.org",
"name": "Mike Lee",
"type": "User",
"login": "AstrobioMike",
"company": "NASA Ames Research Center",
"location": "Mountain View, CA",
"followers": 244,
"avatar_url": "https://avatars.githubusercontent.com/u/13923308?v=4",
"created_at": "2015-08-22T22:58:05Z",
"is_verified": null,
"public_repos": 109,
"account_age_days": 3988
},
"license": {
"state": "standard",
"spdx_id": "GPL-3.0",
"raw_spdx": "GPL-3.0",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v1.8.19",
"kind": "patch",
"published_at": "2026-07-16T14:01:21Z"
},
{
"tag": "pfam-data-latest",
"kind": "other",
"published_at": "2026-07-09T15:29:38Z"
},
{
"tag": "kofamscan-data-latest",
"kind": "other",
"published_at": "2026-07-09T01:17:49Z"
},
{
"tag": "original-SCG-HMMs",
"kind": "other",
"published_at": "2026-07-08T20:48:07Z"
},
{
"tag": "v1.8.18",
"kind": "patch",
"published_at": "2026-07-04T20:42:10Z"
},
{
"tag": "v1.8.17",
"kind": "patch",
"published_at": "2026-05-12T01:06:28Z"
},
{
"tag": "v1.8.16",
"kind": "patch",
"published_at": "2025-07-09T21:28:36Z"
},
{
"tag": "v1.8.15",
"kind": "patch",
"published_at": "2025-06-27T14:25:45Z"
},
{
"tag": "v1.8.14",
"kind": "patch",
"published_at": "2025-04-21T15:41:04Z"
},
{
"tag": "v1.8.13",
"kind": "patch",
"published_at": "2025-03-18T15:10:54Z"
},
{
"tag": "v1.8.12",
"kind": "patch",
"published_at": "2025-03-11T21:17:31Z"
},
{
"tag": "v1.8.11",
"kind": "patch",
"published_at": "2025-03-10T18:21:25Z"
},
{
"tag": "v1.8.10",
"kind": "patch",
"published_at": "2025-02-03T15:48:59Z"
},
{
"tag": "v1.8.9",
"kind": "patch",
"published_at": "2025-01-31T15:55:49Z"
},
{
"tag": "v1.8.8",
"kind": "patch",
"published_at": "2024-10-07T19:18:41Z"
},
{
"tag": "v1.8.7",
"kind": "patch",
"published_at": "2024-09-30T01:07:32Z"
},
{
"tag": "v1.8.6",
"kind": "patch",
"published_at": "2024-05-08T22:28:17Z"
},
{
"tag": "v1.8.5",
"kind": "patch",
"published_at": "2024-05-02T02:11:04Z"
},
{
"tag": "v1.8.4",
"kind": "patch",
"published_at": "2023-11-28T06:21:26Z"
},
{
"tag": "v1.8.3",
"kind": "patch",
"published_at": "2023-10-14T20:32:06Z"
},
{
"tag": "v1.8.2",
"kind": "patch",
"published_at": "2023-07-27T01:58:52Z"
},
{
"tag": "v1.8.1",
"kind": "patch",
"published_at": "2023-06-03T03:01:25Z"
},
{
"tag": "v1.8.0",
"kind": "minor",
"published_at": "2023-06-03T01:05:29Z"
},
{
"tag": "v1.7.10",
"kind": "patch",
"published_at": "2023-04-25T00:42:59Z"
},
{
"tag": "v1.7.08",
"kind": "patch",
"published_at": "2023-03-22T17:47:45Z"
},
{
"tag": "v1.7.07",
"kind": "patch",
"published_at": "2023-02-02T21:38:34Z"
},
{
"tag": "v1.7.06",
"kind": "patch",
"published_at": "2022-12-19T18:31:34Z"
},
{
"tag": "v1.7.05",
"kind": "patch",
"published_at": "2022-10-10T18:54:16Z"
},
{
"tag": "v1.7.04",
"kind": "patch",
"published_at": "2022-10-09T19:27:30Z"
},
{
"tag": "v1.7.03",
"kind": "patch",
"published_at": "2022-10-04T18:58:05Z"
},
{
"tag": "v1.7.02",
"kind": "patch",
"published_at": "2022-10-04T06:15:09Z"
},
{
"tag": "v1.7.00",
"kind": "minor",
"published_at": "2022-09-19T03:07:30Z"
},
{
"tag": "v1.6.37",
"kind": "patch",
"published_at": "2022-08-06T00:13:20Z"
},
{
"tag": "v1.6.36",
"kind": "patch",
"published_at": "2022-07-20T21:36:14Z"
},
{
"tag": "v1.6.35",
"kind": "patch",
"published_at": "2022-07-01T21:43:10Z"
},
{
"tag": "v1.6.34",
"kind": "patch",
"published_at": "2022-04-08T15:52:01Z"
},
{
"tag": "v1.6.33",
"kind": "patch",
"published_at": "2022-03-21T22:40:12Z"
},
{
"tag": "v1.6.32",
"kind": "patch",
"published_at": "2022-03-16T21:07:31Z"
},
{
"tag": "v1.6.31",
"kind": "patch",
"published_at": "2022-02-15T07:41:18Z"
},
{
"tag": "v1.6.20",
"kind": "patch",
"published_at": "2022-02-11T01:45:14Z"
},
{
"tag": "v1.6.12",
"kind": "patch",
"published_at": "2021-11-03T01:35:51Z"
},
{
"tag": "v1.6.11",
"kind": "patch",
"published_at": "2021-08-16T02:10:13Z"
},
{
"tag": "v1.6.10",
"kind": "patch",
"published_at": "2021-08-14T21:06:09Z"
},
{
"tag": "v1.6.00",
"kind": "minor",
"published_at": "2021-08-04T00:35:45Z"
},
{
"tag": "v1.5.54",
"kind": "patch",
"published_at": "2021-06-22T22:31:00Z"
},
{
"tag": "v1.5.52",
"kind": "patch",
"published_at": "2021-06-11T18:01:22Z"
},
{
"tag": "v1.5.51",
"kind": "patch",
"published_at": "2021-04-15T02:42:03Z"
},
{
"tag": "v1.5.50",
"kind": "patch",
"published_at": "2021-04-13T04:30:29Z"
},
{
"tag": "v1.5.48",
"kind": "patch",
"published_at": "2021-04-13T03:37:31Z"
},
{
"tag": "v1.5.47",
"kind": "patch",
"published_at": "2021-03-01T18:25:37Z"
},
{
"tag": "v1.5.46",
"kind": "patch",
"published_at": "2021-02-07T01:31:44Z"
},
{
"tag": "v1.5.45",
"kind": "patch",
"published_at": "2020-12-29T01:49:38Z"
},
{
"tag": "v1.5.44",
"kind": "patch",
"published_at": "2020-12-28T23:57:39Z"
},
{
"tag": "v1.5.43",
"kind": "patch",
"published_at": "2020-12-28T23:10:53Z"
},
{
"tag": "v1.5.42",
"kind": "patch",
"published_at": "2020-12-28T08:55:35Z"
},
{
"tag": "v1.5.41",
"kind": "patch",
"published_at": "2020-12-08T07:29:19Z"
},
{
"tag": "v1.5.40",
"kind": "patch",
"published_at": "2020-12-08T01:12:07Z"
},
{
"tag": "v1.5.39",
"kind": "patch",
"published_at": "2020-11-29T21:11:32Z"
},
{
"tag": "v1.5.38",
"kind": "patch",
"published_at": "2020-10-14T00:14:04Z"
},
{
"tag": "v1.5.36",
"kind": "patch",
"published_at": "2020-09-02T22:15:15Z"
},
{
"tag": "v1.5.35",
"kind": "patch",
"published_at": "2020-09-02T17:53:31Z"
},
{
"tag": "v1.5.34",
"kind": "patch",
"published_at": "2020-09-02T05:23:29Z"
},
{
"tag": "v1.5.33",
"kind": "patch",
"published_at": "2020-09-01T16:49:33Z"
},
{
"tag": "v1.5.31",
"kind": "patch",
"published_at": "2020-08-31T20:07:51Z"
},
{
"tag": "v1.5.30",
"kind": "patch",
"published_at": "2020-08-30T23:22:11Z"
},
{
"tag": "v1.5.22",
"kind": "patch",
"published_at": "2020-08-25T04:18:25Z"
},
{
"tag": "v1.5.21",
"kind": "patch",
"published_at": "2020-08-22T08:24:25Z"
},
{
"tag": "v1.5.20",
"kind": "patch",
"published_at": "2020-08-22T05:22:15Z"
},
{
"tag": "v1.5.10",
"kind": "patch",
"published_at": "2020-08-21T02:36:07Z"
},
{
"tag": "v1.5.01",
"kind": "patch",
"published_at": "2020-08-20T05:04:46Z"
},
{
"tag": "v1.5",
"kind": "other",
"published_at": "2020-08-20T04:25:58Z"
},
{
"tag": "v1.4.17",
"kind": "patch",
"published_at": "2020-08-19T20:24:44Z"
},
{
"tag": "v1.4.16",
"kind": "patch",
"published_at": "2020-06-08T03:35:37Z"
},
{
"tag": "v1.4.15",
"kind": "patch",
"published_at": "2020-05-03T06:06:28Z"
},
{
"tag": "v1.4.14",
"kind": "patch",
"published_at": "2020-04-08T23:14:22Z"
},
{
"tag": "v1.4.13",
"kind": "patch",
"published_at": "2020-04-04T06:06:40Z"
},
{
"tag": "v1.4.12",
"kind": "patch",
"published_at": "2020-03-24T00:06:00Z"
},
{
"tag": "v1.4.11",
"kind": "patch",
"published_at": "2020-02-01T22:07:27Z"
},
{
"tag": "v1.4.10",
"kind": "patch",
"published_at": "2019-11-21T20:53:14Z"
},
{
"tag": "v1.4.8",
"kind": "patch",
"published_at": "2019-11-21T20:05:17Z"
},
{
"tag": "v1.4.7",
"kind": "patch",
"published_at": "2019-09-22T21:48:23Z"
},
{
"tag": "v1.4.6",
"kind": "patch",
"published_at": "2019-09-22T21:43:34Z"
},
{
"tag": "v1.4.5",
"kind": "patch",
"published_at": "2019-08-15T22:11:35Z"
},
{
"tag": "v1.4.4",
"kind": "patch",
"published_at": "2019-07-28T03:44:59Z"
},
{
"tag": "v1.4.3",
"kind": "patch",
"published_at": "2019-07-24T11:52:24Z"
},
{
"tag": "v1.4.2",
"kind": "patch",
"published_at": "2019-06-13T19:48:42Z"
},
{
"tag": "v1.4.1",
"kind": "patch",
"published_at": "2019-06-13T19:18:29Z"
},
{
"tag": "v1.3.1",
"kind": "patch",
"published_at": "2019-06-06T03:46:50Z"
},
{
"tag": "v1.2.1",
"kind": "patch",
"published_at": "2019-05-27T00:50:42Z"
},
{
"tag": "v1.1.13",
"kind": "patch",
"published_at": "2019-05-26T19:09:24Z"
},
{
"tag": "v1.1.12",
"kind": "patch",
"published_at": "2019-05-19T03:45:07Z"
},
{
"tag": "v1.1.11",
"kind": "patch",
"published_at": "2019-05-19T03:01:10Z"
},
{
"tag": "v1.1.10",
"kind": "patch",
"published_at": "2019-03-12T06:58:35Z"
},
{
"tag": "v1.1.9",
"kind": "patch",
"published_at": "2019-03-12T00:22:15Z"
},
{
"tag": "v1.1.8",
"kind": "patch",
"published_at": "2019-03-09T00:04:41Z"
},
{
"tag": "v1.1.7",
"kind": "patch",
"published_at": "2019-03-06T08:01:44Z"
},
{
"tag": "v1.1.6",
"kind": "patch",
"published_at": "2019-02-20T20:45:32Z"
},
{
"tag": "v1.1.5",
"kind": "patch",
"published_at": "2019-02-10T03:30:45Z"
},
{
"tag": "v1.1.3",
"kind": "patch",
"published_at": "2019-02-04T23:42:09Z"
},
{
"tag": "v1.1.2",
"kind": "patch",
"published_at": "2019-01-24T02:53:03Z"
}
],
"recent_commits": [
{
"oid": "c4e526449d5933339d2f0d2f9318de9e82eaef12",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-16T14:01:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "45ede669ffc5f9c883ebefb48d70b6ed3984d164",
"body": null,
"is_bot": false,
"headline": "making gtt-get-ncbi-tax-data more stable",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-16T13:58:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f9d686bc7e5a1710b32026dc23d7bdf26d40607d",
"body": null,
"is_bot": false,
"headline": "version bump and changelog update",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-16T13:29:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6f27367c2f596a4ccc4ee5a88e6d7f8cf3a055d0",
"body": null,
"is_bot": false,
"headline": "adding restart when download from github is slow",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-16T13:24:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ec37dc17c78817c8252657e79b61682d79af77d",
"body": null,
"is_bot": false,
"headline": "adding pfam staging action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-09T15:37:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d50025f76b3cea9ef2e6bbf7181b02c6275e8937",
"body": null,
"is_bot": false,
"headline": "adding pfam staging action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-09T15:34:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0bb0a2d81c2c4a0317aebf0a0e1bee03f056878b",
"body": null,
"is_bot": false,
"headline": "adding pfam staging action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-09T15:17:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ebc4d9e9a5a8cde11bc0501f39fa4f8ccc148371",
"body": null,
"is_bot": false,
"headline": "m",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-09T15:01:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "550fe5dcefe395d155c0762783387398c1043973",
"body": null,
"is_bot": false,
"headline": "m",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2026-07-09T14:57:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5cbaff5bf59599c0fe105e4c03f159561356d31f",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T02:50:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ddc1a95b198bc865db1b0471ca8297d41c4ad5ed",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T02:45:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e52723ce7a7596c4efcfe649f64ddbcf4ac60ad8",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T02:35:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8057412f590ad5f9d696020c65bcf308463e94b7",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T02:18:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c94cde5762c2912636b46698c2f61b3c3c07da29",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T01:47:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4312090e112c2538732fce1fee8d444d497cb7dd",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T01:30:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "63572a8c94b30996a5d7f051100080274ef07304",
"body": "…po so users no longer have trouble accessing the kofam data ftp site",
"is_bot": false,
"headline": "adding action for auto-refreshing kofamscan, and hosting on github re…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-09T01:25:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "06f61033715569b1148e1bb90181d903495ca888",
"body": null,
"is_bot": false,
"headline": "Update citation and install badge counts in README",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2026-07-04T21:24:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4208c34d8d4985686d307eb6100184e1c4bbf86e",
"body": "Removed the --use-ecogenomics flag from gtt-get-accessions-from-GTDB as it is no longer relevant.",
"is_bot": false,
"headline": "Update CHANGELOG for v1.8.18 changes",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2026-07-04T20:50:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "095ed1cd3a8482bc478a2de84f23c1cb34c77d72",
"body": null,
"is_bot": false,
"headline": "using my prepackaged gtdb slimmed table from github now",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-04T20:41:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "81ebcfd1f9358a6e7719297784ed18400903a276",
"body": "… table for download",
"is_bot": false,
"headline": "robustifying assembly download; setting slimmed ncbi assembly summary…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-07-04T20:12:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0615984bec6c79b8e6606ca2f2f58057f670d994",
"body": null,
"is_bot": false,
"headline": "minor fixes to gtt-gen-SCG-HMMs",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-05-12T00:55:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a813c34277a49755eb8194f2da7231aa9d4f6195",
"body": null,
"is_bot": false,
"headline": "minor fixes to gtt-gen-SCG-HMMs",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-05-11T22:36:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7edaa88d6f7a4813fe38b8e1fab56a80534c6516",
"body": null,
"is_bot": false,
"headline": "minor fixes to gtt-gen-SCG-HMMs",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-05-11T22:01:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bfd755a12757d3ead88128548d59ea2d686654fd",
"body": null,
"is_bot": false,
"headline": "minor fixes to gtt-gen-SCG-HMMs",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2026-05-11T21:31:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "157683d49f00f7e8cbcb2004518f530b9d71ed6b",
"body": null,
"is_bot": false,
"headline": "Update citation and conda install badge counts",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-12-16T00:19:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03a5ec30400f23975fe9a7ef02116e3f91a4c1b1",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-10-25T23:26:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f19b1bc4ffeeffcefb53d850e2b7dbc505b29ea1",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-08-06T18:35:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8737707e5a5abcb4767f50ca537fd8c9e1d15086",
"body": null,
"is_bot": false,
"headline": "fix to gtt-get-accessions-from-GTDB thanks to note from @MariaAVC",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2025-07-09T21:23:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "70b992f3bcc23a15a3f071b48596fd48cf4b3976",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-06-27T14:24:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08c303fd6b5f2eaad5167ae8b6e17cf28a1da3eb",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-06-27T14:21:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ab0431a156fb35cb909d882dfbdd4829302116ca",
"body": null,
"is_bot": false,
"headline": "updating changelog",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-06-27T14:21:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4b1e9587b531381ff69a0a52d5064baece11cd21",
"body": "…ly redundant code)",
"is_bot": false,
"headline": "other location to adjust for gtdb cert failure (in my currently gross…",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-06-27T14:10:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4c356c629d2d26ec8f22c2eb3a24d523f9c95d98",
"body": "… from @Stian-2rz (#108)",
"is_bot": false,
"headline": "also generating a partitions file in nexus format now, thanks to note…",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-06-27T13:53:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3d3b82d32278f91d8197e87cdbe592acb1199ab5",
"body": "…r location to `bit-get-accessions-from-GTDB` thanks to #107",
"is_bot": false,
"headline": "addressing certificate failed issue and adding flag to pull from othe…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2025-06-27T12:48:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b78d0a2d5690beb4adc526e972d323cfae2db922",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-05-22T15:15:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "16032e000121014dda0f4e8c139fc02c0dc61e0b",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-04-21T15:40:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "58539875f38f976c5f2522891216eeaf36c59312",
"body": null,
"is_bot": false,
"headline": "adjustment to taxonkit call to account for new NCBI tax structure",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-04-21T15:38:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1991332e40dfa1b937b76d1b52999139c9ae72b7",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-03-18T15:16:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2761b58adc02ceb47155a269928e93ba31520bea",
"body": null,
"is_bot": false,
"headline": "temporary fix for https://github.com/AstrobioMike/GToTree/issues/104",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-03-18T13:55:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "60c5daa2ab93e36324967ad2f1e127767c524b2d",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-03-11T21:16:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3a00e969809dbc4af41ea265cdc23b7de1f33752",
"body": null,
"is_bot": false,
"headline": "changing links for GTDB downloads for better overall performance",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2025-03-11T21:11:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "735c7d6836720af6979b0d5bd9d21c22bf4bdade",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-03-10T18:20:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6d997f9c45a8584f569fae46f83460df5ffcc323",
"body": "…hub.com/AstrobioMike/GToTree/issues/96)",
"is_bot": false,
"headline": "adding VeryFastTree thanks to suggestion from @jianshu93 (https://git…",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-03-10T18:04:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "42eb3e26e8e16816b6f09b05dd3499099d991f53",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-02-21T18:42:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "597527062f21bac021c9ec1b1f8770fcd1fc2dfc",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-02-21T18:40:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f23fa424fb7a1d533d4e15f2a30bf0b8b3508516",
"body": "…ike/GToTree/issues/89)",
"is_bot": false,
"headline": "removing spaces from output files from (https://github.com/AstrobioM…",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-02-21T18:36:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87d646e3bd976200e488980229dd03a3ae35eb9c",
"body": null,
"is_bot": false,
"headline": "removing debugging statements",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-02-03T15:47:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2aed097205f486495adcedffa6095af53763ba8",
"body": "Saving ncbi downloads",
"is_bot": false,
"headline": "Merge pull request #102 from AstrobioMike/saving-ncbi-downloads",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-02-03T15:11:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bdc53ffde49b6d31b15d3ebba962f1059f263bb1",
"body": null,
"is_bot": false,
"headline": "storing ncbi downloads in debug mode",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-02-03T15:07:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8201ff39096ff1315432b709591199b2d5f5f2a3",
"body": null,
"is_bot": false,
"headline": "working on storing ncbi downloads in debug mode",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T20:37:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f75ba88cc1e01de9f9a7a26196c10fe99cdc64be",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-01-31T16:44:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "be00dca198685e506c8faba5cf2a38ea4018f9fc",
"body": null,
"is_bot": false,
"headline": "adding github action full-run test",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T16:26:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a7ba8af475257dbcc86d45b1764b6c023143590b",
"body": null,
"is_bot": false,
"headline": "updating github action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T16:22:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "845843420909c777926ffd6b97d6f23075ad7b41",
"body": null,
"is_bot": false,
"headline": "updating github action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T16:17:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2a933de4a8c2919dbfe239d24a2be6e0badc8c4e",
"body": null,
"is_bot": false,
"headline": "updating github action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T16:11:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1904915cc5ae8180eda10741c2908707e9303657",
"body": null,
"is_bot": false,
"headline": "updating github action",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T15:59:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2ad2d27e31dd08dbca59d7eaaf9abe8ccade03d4",
"body": "…tps://github.com/AstrobioMike/GToTree/issues/101)",
"is_bot": false,
"headline": "adding some logic to catch if muscle doesn't produce an alignment (ht…",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2025-01-31T15:49:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca1d9fe2db605443540b894c9ac2994481e220a8",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-01-31T14:44:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c79f28c4448f4657f2c4294396e59f1990f7c4fd",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2025-01-14T16:34:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "accc7c15b516b2c62da3df58041179f20f52165a",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-10-10T19:43:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00d4d138e18182445d096b1e64c5cc5e450d223a",
"body": null,
"is_bot": false,
"headline": "updating the nucleotide call to fasttree to include -nt and -gtr",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-10-07T18:56:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "824be8e67fb4796c457be173e42039be9d166061",
"body": null,
"is_bot": false,
"headline": "verbiage",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-10-07T17:18:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55ec5467311739e4d6d7a005eea196efcad87fc4",
"body": null,
"is_bot": false,
"headline": "fix unnecessary grep error output",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-10-07T15:02:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "af72ae848c880c0059199a2f968ffed6d75b0f86",
"body": null,
"is_bot": false,
"headline": "version bump",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-09-30T20:04:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4009b2ac508aceda8dcb321c170b9b3ddc63e039",
"body": null,
"is_bot": false,
"headline": "saving additional pfam target hmms when that functionality is used",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-09-30T19:48:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "39ce5f114391938612df1df49ee6cc759208bed9",
"body": " - PF00181 (\"Ribosomal_L2\") was changed to PF03947 (\"Ribosomal_L2_C\")\n - the C-terminal (which PF03947 covers) is better conserved\n - PF00827 (\"Ribosomal_L15\") was changed to PF00828 (\"Ribosomal_L27A\")\n - PF00827 was archaea/euk only, PF00828 holds the bac/arc L15 also\n - PF17135 (\"Ribosomal_L18\") was changed to PF00861 (\"Ribosomal_L18p\")\n - the PF00861 model is better distributed",
"is_bot": false,
"headline": "updating the Universal HMM set thanks to notes from @molly-kholodova",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2024-09-30T01:03:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5a5b9fdbc17fdc2b4643489b7eed7e8094f3acf",
"body": null,
"is_bot": false,
"headline": "typo",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-09-27T18:29:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "90e183105dd68c49239c616d0a8b0f54f9cb9634",
"body": null,
"is_bot": false,
"headline": "updating gtt-gen-SCG-HMMs to report version of PFam used",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-09-26T20:35:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fbf4e2a3742596778fc799502c928bc702028840",
"body": null,
"is_bot": false,
"headline": "updating gtt-gen-SCG-HMMs to report version of PFam used",
"author_name": "Mike Lee",
"author_login": null,
"committed_at": "2024-09-26T20:26:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e9d3a0d940c635c915fea908ed89711a48a8249",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-09-18T18:31:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c3b7b135804fe8b6dba5d67d9933c2a99c5ee18d",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-08-09T18:30:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bb2ea1978dd1e2cb32563bb4f377f951a1cc0c60",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-06-14T19:46:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "541fe2dee2baf7d2cf5300c5147cf07a83f976d2",
"body": null,
"is_bot": false,
"headline": "Update gtt-ncbi-parallel-nt.sh",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-06-11T18:33:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c197e9e3c1616662740711c1ee5eef0d7bb1b3ee",
"body": null,
"is_bot": false,
"headline": "Update gtt-ncbi-serial-nt.sh",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-06-11T18:33:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9ed4b054152fcad7d8bade5b004b1aa002d3913b",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-05-24T21:48:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08d2db5df069ef7d946222ecab8a07807815532c",
"body": "….com/AstrobioMike/GToTree/issues/91)",
"is_bot": false,
"headline": "fixing bug where taxonomy info wasn't being preserved (https://github…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2024-05-08T22:21:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8053a391596a76adf9f3d908ad717046da4d70bb",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-05-05T20:38:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f4de56fd602604e0f0fe42c7147059345573848f",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-05-05T20:36:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "26af4de58aafd9129bd000c7121fe8f4490124c9",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-05-05T20:35:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7365fc07426ebb15e791b048c03145b27be8f4fe",
"body": null,
"is_bot": false,
"headline": "typo fix in gtt-data-locations print out message",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2024-05-03T02:18:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0a8cd5301e166ffec80f5d4312ccfdec67b1ceef",
"body": "…e in ncbi tables",
"is_bot": false,
"headline": "update to gtt-gen-SCG-HMMs to work with slightly different column nam…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2024-05-02T02:08:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "656bb7009d135be7f2b7bd12dd4785d79a9cb27f",
"body": "help menu tweak",
"is_bot": false,
"headline": "Update GToTree",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-04-29T23:06:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca7ea3528b46e1fc5007765bcc99f9b7b1497af9",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2024-02-19T16:52:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "382f99d2b332fb595cec34aa4938dd9c7d40b65b",
"body": null,
"is_bot": false,
"headline": "update",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-11-28T06:17:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aa550d08a91326d2aa4f88e566a141cc3020f9ea",
"body": "…ub.com/AstrobioMike/GToTree/issues/83)",
"is_bot": false,
"headline": "fix to un-passable warning thanks to note from @ReneKat (https://gith…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-11-28T06:12:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5f87f9af74decb0a8e252294882e631ff96cc7e1",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-11-08T23:35:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cb9d1be0c756662c02a22953f5cbd19764913d0a",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-11-08T23:34:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8a0e5ca2d83c18037ca75207f038f184cd2d85ae",
"body": "- having errors with mamba in macos test, trying workaround as noted here: https://github.com/conda-incubator/setup-miniconda/issues/274#issue-1531425010",
"is_bot": false,
"headline": "Update test-conda-installs.yml",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T21:24:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad00ea14abc905c4b6c95ca7f7aebd99de3005e1",
"body": "- having errors with mamba in macos test, trying workaround as noted here: https://github.com/conda-incubator/setup-miniconda/issues/274#issue-1531425010",
"is_bot": false,
"headline": "Update test-conda-installs.yml",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T21:18:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2cba70b7d75cd1cdc5fd9ea3b8e2ccee8cf0833f",
"body": "- removing gtt-test.sh execution (i think intended errors i have in there are causing a failure)",
"is_bot": false,
"headline": "Update test-conda-installs.yml",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T21:05:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "24c09d13d0552959a899e6f05b967cf2340ab950",
"body": "- adding execution of `gtt-test.sh` at end",
"is_bot": false,
"headline": "Update test-conda-installs.yml",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T20:56:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b42886836e2f8b0ed346aa049769bd16816e4cf9",
"body": "…hanks to note from @jmtsuji (https://github.com/AstrobioMike/GToTree/issues/81)",
"is_bot": false,
"headline": "updating gtdb links from tar to tsv in due to change on gtdb side, t…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T20:28:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9c2ebbab07ccd2d60f9e9b3100b6ee7a5154cbf",
"body": "…s to note from @jmtsuji (https://github.com/AstrobioMike/GToTree/issues/81)",
"is_bot": false,
"headline": "updating gtdb links from tar to tsv due to change on gtdb side, thank…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-10-14T20:22:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "26361fd366411d6a567cdb2112bfa7d112742a95",
"body": "- updating number of citations",
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-10T05:33:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b11fe5260efb4338a4eb9054fdf17860de049b08",
"body": "- updating number of conda installs",
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-10-10T05:30:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "803511539500d085af3afe8b65b898f0b5d64dbe",
"body": "…ps://github.com/AstrobioMike/GToTree/issues/78)",
"is_bot": false,
"headline": "adding http option to gtt-test.sh thanks to note from @corkdagga (htt…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-07-25T17:13:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7835991845319f15737779313745605584deb6de",
"body": "…-P flag provided to main program",
"is_bot": false,
"headline": "updating gtt-get-ncbi-tax-data to pull from http instead of ftp when …",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-07-25T16:59:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9eb248ad5a54563370978d3575727eb63ad93483",
"body": "… if it is empty now to avoid error that did not affect anything",
"is_bot": false,
"headline": "check for ncbi assemblies \"date-retrieved.txt\" file includes checking…",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-07-25T16:39:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5382ce9a2cce995a5ca264eadb8c7f4fa8c16a7",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Mike Lee",
"author_login": "AstrobioMike",
"committed_at": "2023-07-25T16:00:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aa081dab6d5c757684c503c909c5e666d05178a8",
"body": null,
"is_bot": false,
"headline": "update to workflow trigger",
"author_name": "AstrobioMike",
"author_login": "AstrobioMike",
"committed_at": "2023-06-11T04:10:23Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 100,
"commits_last_year": 27,
"latest_release_at": "2026-07-16T14:01:21Z",
"latest_release_tag": "v1.8.19",
"releases_from_tags": false,
"days_since_last_push": 0,
"active_weeks_last_year": 6,
"days_since_latest_release": 7,
"mean_days_between_releases": 53.9
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 42,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 24,
"stars": 231,
"watchers": 11,
"fork_history": {
"days": [
{
"date": "2018-12-29",
"count": 1
},
{
"date": "2019-01-08",
"count": 1
},
{
"date": "2019-01-10",
"count": 1
},
{
"date": "2019-01-20",
"count": 1
},
{
"date": "2019-03-14",
"count": 1
},
{
"date": "2019-04-09",
"count": 1
},
{
"date": "2019-06-25",
"count": 1
},
{
"date": "2019-07-01",
"count": 1
},
{
"date": "2019-11-02",
"count": 1
},
{
"date": "2020-01-21",
"count": 1
},
{
"date": "2021-03-31",
"count": 1
},
{
"date": "2021-10-25",
"count": 1
},
{
"date": "2021-12-30",
"count": 1
},
{
"date": "2022-04-06",
"count": 1
},
{
"date": "2022-08-01",
"count": 1
},
{
"date": "2022-12-28",
"count": 1
},
{
"date": "2023-02-23",
"count": 2
},
{
"date": "2023-05-30",
"count": 1
},
{
"date": "2023-07-27",
"count": 1
},
{
"date": "2023-08-04",
"count": 1
},
{
"date": "2024-04-24",
"count": 1
},
{
"date": "2024-12-02",
"count": 1
}
],
"complete": true,
"collected": 23,
"total_forks": 24
},
"star_history": null,
"open_issues_and_prs": 8
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [],
"advisories": {
"error": "No resolved dependencies to assess",
"scope": "repository_graph",
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [],
"dependencies": [],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [],
"collected": true,
"truncated": false,
"total_count": 0,
"direct_count": 0,
"indirect_count": 0
}
},
"maintainership": {
"issues": {
"open_prs": 0,
"merged_prs": 3,
"open_issues": 8,
"closed_ratio": 0.927,
"closed_issues": 101,
"closed_unmerged_prs": 1
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "AstrobioMike",
"commits": 241,
"avatar_url": "https://avatars.githubusercontent.com/u/13923308?v=4"
},
{
"type": "User",
"login": "vinisalazar",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/17276653?v=4"
}
],
"contributors_sampled": 2,
"top_contributor_share": 0.992
},
"quality_signals": {
"has_ci": true,
"has_tests": false,
"ci_workflows": [
"refresh-kofamscan-data.yaml",
"refresh-pfam-data.yaml",
"test-conda-installs.yml",
"test-full-run.yml"
],
"has_docs_dir": false,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 0,
"reason": "branch protection not enabled on development/release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": null,
"reason": "no pull request found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/30 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 4 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "24 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": null,
"reason": "packaging workflow not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "no SAST tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": 0,
"reason": "Project has not signed or included provenance with any releases.",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "c4e526449d5933339d2f0d2f9318de9e82eaef12",
"ran_at": "2026-07-24T01:50:36Z",
"aggregate_score": 3.8,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-16T14:01:07Z",
"oldest_open_prs": [],
"last_merged_pr_at": "2025-02-03T15:11:36Z",
"ci_last_conclusion": null,
"oldest_open_issues": [
{
"number": 75,
"created_at": "2023-04-13T17:13:21Z",
"last_comment_at": "2024-09-30T01:21:19Z",
"last_comment_author": "AstrobioMike"
},
{
"number": 86,
"created_at": "2024-03-01T00:37:48Z",
"last_comment_at": "2024-03-01T02:01:39Z",
"last_comment_author": "nandan75"
},
{
"number": 90,
"created_at": "2024-04-30T01:23:23Z",
"last_comment_at": "2025-02-03T15:56:22Z",
"last_comment_author": "AstrobioMike"
},
{
"number": 92,
"created_at": "2024-05-02T02:41:50Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 98,
"created_at": "2024-09-17T09:55:03Z",
"last_comment_at": "2025-03-26T01:56:16Z",
"last_comment_author": "raufs"
},
{
"number": 100,
"created_at": "2024-10-07T14:20:02Z",
"last_comment_at": "2026-04-22T19:53:33Z",
"last_comment_author": "ewilbanks"
},
{
"number": 104,
"created_at": "2025-03-17T16:59:46Z",
"last_comment_at": "2025-03-17T19:02:34Z",
"last_comment_author": "AstrobioMike"
},
{
"number": 113,
"created_at": "2026-04-22T18:03:41Z",
"last_comment_at": "2026-04-22T21:36:05Z",
"last_comment_author": "AstrobioMike"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/AstrobioMike/GToTree",
"host": "github.com",
"name": "GToTree",
"owner": "AstrobioMike"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 51,
"inputs": {
"security": 38,
"vitality": 71,
"community": 53,
"governance": 51,
"engineering": 38
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 71,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 63,
"inputs": {
"commits_last_year": 27,
"human_commit_share": 1,
"days_since_last_push": 0,
"active_weeks_last_year": 6
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 0 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "push_recency",
"params": {
"days": 0
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "6/52 weeks with commits",
"points": 4.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 6
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "27 commits in the last year",
"points": 13,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 27
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "24 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "good",
"name": "Release discipline",
"note": null,
"notes": [],
"value": 83,
"inputs": {
"releases_count": 100,
"latest_release_tag": "v1.8.19",
"releases_from_tags": false,
"days_since_latest_release": 7,
"mean_days_between_releases": 53.9
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "100 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 100
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 7 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 7
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~53.9 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 53.9
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "Project has not signed or included provenance with any releases.",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 7,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 7 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 7
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 53,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "moderate",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"forks": 24,
"stars": 231,
"watchers": 11,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "231 stars",
"points": 38.3,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 231
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "24 forks",
"points": 11.3,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 24
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "11 watchers",
"points": 5.6,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 11
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (GPL-3.0)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "GPL-3.0"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 51,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "critical",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 22,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 2,
"top_contributor_share": 0.992
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 99% of commits",
"points": 0.2,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 99
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "2 contributors",
"points": 2.7,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 2
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 72,
"inputs": {
"merged_prs": 3,
"open_issues": 8,
"closed_issues": 101,
"issue_closed_ratio": 0.927,
"closed_unmerged_prs": 1
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "93% of issues closed",
"points": 43.3,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 93
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "3/4 decided PRs merged",
"points": 28.7,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 3,
"decided": 4
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"verified_domain"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 65,
"inputs": {
"followers": 244,
"owner_type": "User",
"is_verified": null,
"owner_login": "AstrobioMike",
"public_repos": 109,
"account_age_days": 3988
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "personal (user) account",
"points": 10,
"status": "partial",
"details": [
{
"code": "owner_personal",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": "not applicable to user accounts",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_applicable_to_user_accounts",
"params": {}
}
],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "244 followers of AstrobioMike",
"points": 17.2,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 244,
"login": "AstrobioMike"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "109 public repos, account ~10 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 109
}
},
{
"code": "account_age_years",
"params": {
"years": 10
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "at_risk",
"name": "Engineering Quality",
"value": 38,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "at_risk",
"name": "Engineering practices",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_ci_tests"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 30,
"inputs": {
"has_ci": true,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "4 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 4
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"topics": [],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 38,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): CI-Tests, Packaging. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"ci_tests",
"packaging"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 38,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 3.8
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "24 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "Project has not signed or included provenance with any releases.",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 6
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 2,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 4,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.07,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "7 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 3.7,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 7,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 1,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "critical",
"name": "Code legibility for models",
"note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"manageable_file_sizes"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"primary_language": "Shell",
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Shell without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Shell"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "no source files detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_source_files",
"params": {}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-24T01:50:41.954579Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/a/AstrobioMike/GToTree.svg",
"full_name": "AstrobioMike/GToTree",
"license_state": "standard",
"license_spdx": "GPL-3.0"
}