Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-10-22 00:00 UTC

ENPICOM / immunum

A high-performance antibody and TCR sequence numbering tool for Rust, Python, Polars and JS/TS.

Rust · PythonMIT★ 34 stars⑂ 4 forkssince Jun 2025View on GitHub ↗

KindCommand-line toolLibraryhow this is determined

ENPICOM/immunum holds a health index of 77 out of 100, placing it in the Good band. It scores highest on Engineering Quality (92/100) and lowest on Security (46/100). It was last updated 1 day ago. A single contributor accounts for most of its recent work.

overall / 100

Good

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met

Excellent80-92Strong across the board; minor gaps

Good65-79Healthy; gaps are limited and manageable

Moderate50-64Acceptable with notable gaps; review recommended

Weak35-49Material weaknesses across several areas

At Risk20-34Significant weaknesses; adoption warrants caution

Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 66 is calibrated to 77 on the published index scale (record calibration 2026-08-02).

Ownership

ENPICOMOrganization

8 followers6 public repossince Jul 2016

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

Registry	Package	Version	Downloads / mo	Versions	Last publish	Tags
crates.io	immunum	2.0.0	329	13	9 days ago	antibody imgt numbering python schemes command-line-utilities
PyPI	immunum	2.0.0	19,666	12	9 days ago	antibody numbering schemes python imgt

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

81Excellent · 21% of overall

Development activity

75Good

How it's scored

36/36	Push recency — last push 1 days ago
11.1/36	Commit cadence — 16/52 weeks with commits
18/18	Commit volume — 107 commits in the last year
10/10	OpenSSF Scorecard: Maintained — 30 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10

Inputs used

commits_last_year	107
human_commit_share	1
days_since_last_push	1
active_weeks_last_year	16

Release discipline

90Excellent

How it's scored

27/27	Ships releases — 12 releases published
36/36	Release recency — latest release 9 days ago
27/27	Release cadence — a release every ~22.6 days
0/10	OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.

Inputs used

releases_count	12
latest_release_tag	v2.0.0
releases_from_tags	no
days_since_latest_release	9
mean_days_between_releases	22.6

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

54Moderate · 17% of overall

Popularity & adoption

29At Risk

How it's scored

24.6/60	Stars — 34 stars
4/25	Forks — 4 forks
0/15	Watchers — 0 watchers

Inputs used

forks	4
stars	34
watchers	0
growth_state	unverified
growth_factor_pct	100
growth_unverified_reason	no_history

Community health

70Good

How it's scored

22.5/22.5	README
22.5/22.5	License — recognized license (MIT)
18/18	CONTRIBUTING guide
0/13.5	Code of conduct
0/7.2	Issue template
0/6.3	PR template

Inputs used

has_readme	yes
has_license	yes
readme_badges	6
has_contributing	yes
has_issue_template	no
has_code_of_conduct	no
readme_badge_services	shields.io
has_pull_request_template	no

Ecosystem adoption (downloads)

72Good

How it's scored

57.3/80	Monthly downloads — 19,995 downloads/month across crates, pypi
0/20	Registry dependents — not reported by this ecosystem

Inputs used

packages	immunum, immunum
dependents	—
ecosystems	crates, pypi
total_downloads	1,283
monthly_downloads	19,995
unverified_packages_excluded	—

Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

52Moderate · 23% of overall

Maintainer resilience (bus factor)

20At Risk

How it's scored

9/54	Bus factor — 1 contributor(s) cover half of all commits
2.9/22.5	Commit distribution — top contributor authored 87% of commits
5.4/13.5	Contributor breadth — 4 contributors
3/10	OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3

Inputs used

bus_factor	1
contributors_sampled	4
top_contributor_share	0.869

Issue & PR responsiveness

48Weak

How it's scored

13.1/42	Issue resolution — 31% of issues closed
21.9/30	PR acceptance — 35/48 decided PRs merged
5.2/13	Newcomer PR acceptance — 2/5 first-time contributors' PRs merged in 30d
7.5/15	OpenSSF Scorecard: Code-Review — Found 2/4 approved changesets -- score normalized to 5

Inputs used

merged_prs	35
open_issues	11
closed_issues	5
prs_merged_7d	0
prs_decided_7d	1
prs_merged_30d	7
prs_decided_30d	11
issue_closed_ratio	0.312
closed_unmerged_prs	13
first_time_authors_30d	3
first_time_prs_merged_30d	2
first_time_prs_decided_30d	5

Ownership & stewardship

55Moderate

How it's scored

30/30	Ownership backing — organization-owned
0/20	Verified domain
6.9/25	Owner reach — 8 followers of ENPICOM
18.2/25	Track record — 6 public repos, account ~10 yr old

Inputs used

followers	8
owner_type	Organization
is_verified	no
owner_login	ENPICOM
public_repos	6
account_age_days	3,737

Package maintenance

100Exceptional

How it's scored

25/25	Published & resolvable — 2 package(s) on crates, pypi
35/35	Publish recency — latest publish 9 days ago
20/20	Version history — 13 published versions
20/20	Not deprecated — active, not deprecated or yanked

Inputs used

packages	immunum, immunum
ecosystems	crates, pypi
any_deprecated	no
min_days_since_publish	9

Engineering Quality

Are baseline engineering and documentation practices in place?

92Excellent · 19% of overall

Engineering practices

94Exceptional

How it's scored

24/24	CI workflows — 4 workflow(s)
24/24	Tests present
16/16	Linter config — pyproject.toml ([tool.ruff])
9.6/9.6	Pre-commit hooks
0/6.4	.editorconfig
20/20	OpenSSF Scorecard: CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10

Inputs used

has_ci	yes
has_tests	yes
has_editorconfig	no
has_linter_config	yes
has_precommit_config	yes

Documentation

90Excellent

How it's scored

30/30	README
25/25	Documentation directory
15/15	Documentation / homepage site — https://immunum.enpicom.com
10/10	Repository description
10/10	Topics — 3 topics
0/10	Wiki

Inputs used

topics	antibody, numbering, segmentation
has_wiki	no
homepage	https://immunum.enpicom.com
docs_site	https://immunum.enpicom.com
has_readme	yes
has_docs_dir	yes
has_description	yes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

46Weak · 16% of overall

Security posture

41Weak

How it's scored

7.5/7.5	Binary-Artifacts — no binaries found in the repo
3.8/7.5	Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5	CI-Tests — 4 out of 4 merged PRs checked by a CI test -- score normalized to 10
0/2.5	CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
3.8/7.5	Code-Review — Found 2/4 approved changesets -- score normalized to 5
0.8/2.5	Contributors — project has 1 contributing companies or organizations -- score normalized to 3
10/10	Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5	Dependency-Update-Tool — no update tool detected
0/5	Fuzzing — project is not fuzzed
2.5/2.5	License — license file detected
7.5/7.5	Maintained — 30 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10
5/5	Packaging — packaging workflow detected
0/5	Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5	SAST — SAST tool is not run on all commits -- score normalized to 0
0/5	Security-Policy — security policy file not detected
0/7.5	Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5	Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5	Vulnerabilities — 22 existing vulnerabilities detected

Inputs used

source	openssf_scorecard
checks_evaluated	18
scorecard_version	v5.5.0
checks_inconclusive	0
scorecard_aggregate	4.1

Dependency advisories

64Moderate

How it's scored

14/35	Direct dependencies free of known advisories — 1 affected: pyo3 0.25.1 (high 7.5)
0/25	Indirect dependencies free of known advisories — transitive set not separable from development and test dependencies in this scope
33.7/40	No advisories left outstanding — 1 advisory-carrying package(s) unaddressed past 90 days; oldest published 132 days ago

Inputs used

source	osv
advisories	25
affected_packages	14
assessed_packages	538
unassessed_packages	0
affected_by_severity	high 4, moderate 1, unknown 9
direct_affected_packages	1

Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories. Remaining weights renormalized. Matched 538 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

70Good · 4% of overall

Agent context & guidance

40Weak

How it's scored

0/45	Agent instructions — no CLAUDE.md / AGENTS.md / editor rules
0/15	Machine-readable docs (llms.txt)
40/40	Legible commit history — 81 of 100 human commits state their intent (structured subject or explanatory body)

Inputs used

has_llms_txt	no
llms_txt_url	—
legible_history_share	0.81
agent_instruction_files	—
agent_instruction_max_bytes	—

Verify loop (build / test / typecheck)

82Excellent

How it's scored

18/18	One-command bootstrap — Taskfile.yml
22/22	Automated tests
11/11	Lint / format config — pyproject.toml ([tool.ruff])
11/11	Static type checking — immunum/py.typed
10/10	Reproducible environment — lockfile
10/10	Demonstrated agent practice — 6 of the last 100 commits agent-authored or agent-credited
0/8	Automated maintenance — no automated dependency updates observed
0/10	OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0

Inputs used

has_nix	no
has_tests	yes
lockfiles	Cargo.lock, uv.lock
has_dockerfile	no
typed_language	yes
bootstrap_files	Taskfile.yml
has_devcontainer	no
has_linter_config	yes
typecheck_configs	immunum/py.typed
agent_commit_share	0.06
toolchain_manifests	Cargo.toml
dependency_bot_commit_share	0

Code legibility for models

100Exceptional

How it's scored

45/45	Type-checkable code — Rust (statically typed)
55/55	Manageable file sizes — 0/42 source files over 60KB

Inputs used

primary_language	Rust
largest_source_bytes	43,594
source_files_sampled	42
oversized_source_files	0

Key facts

34GitHub stars

4contributors

107commits, last 12 months

1days since last push

12releases

1bus factor

11open issues

crates.io, PyPIpackage ecosystems

Data collection warnings

Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

More detail

Star and fork history 0 ★ / 4 ⇿

0Stars

4Forks

4Releases

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

Major 0Minor 2Patch 2

OpenSSF Scorecard 4.1 / 10

4.1aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-10-22 00:00 UTC

10	Binary-Artifacts	no binaries found in the repo
5	Branch-Protection	branch protection is not maximal on development and all release branches
10	CI-Tests	4 out of 4 merged PRs checked by a CI test -- score normalized to 10
0	CII-Best-Practices	no effort to earn an OpenSSF best practices badge detected
5	Code-Review	Found 2/4 approved changesets -- score normalized to 5
3	Contributors	project has 1 contributing companies or organizations -- score normalized to 3
10	Dangerous-Workflow	no dangerous workflow patterns detected
0	Dependency-Update-Tool	no update tool detected
0	Fuzzing	project is not fuzzed
10	License	license file detected
10	Maintained	30 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 10
10	Packaging	packaging workflow detected
0	Pinned-Dependencies	dependency not pinned by hash detected -- score normalized to 0
0	SAST	SAST tool is not run on all commits -- score normalized to 0
0	Security-Policy	security policy file not detected
0	Signed-Releases	Project has not signed or included provenance with any releases.
0	Token-Permissions	detected GitHub workflow tokens with excessive permissions
0	Vulnerabilities	22 existing vulnerabilities detected

Direct dependencies 16

Registry	Package	Version constraint	Manifest
crates.io	serde	`1.0`	Cargo.toml
crates.io	serde_json	`1.0`	Cargo.toml
crates.io	thiserror	`2.0`	Cargo.toml
crates.io	strum	`0.27`	Cargo.toml
crates.io	strum_macros	`0.27`	Cargo.toml
crates.io	toml	`0.8`	Cargo.toml
crates.io	chrono	`0.4`	Cargo.toml
crates.io	clap	`4.5.60`	Cargo.toml
crates.io	pyo3	`0.25.0`	Cargo.toml
crates.io	postcard	`=1.1.3`	Cargo.toml
crates.io	polars	`0.51.0`	Cargo.toml
crates.io	polars-core	`0.51.0`	Cargo.toml
crates.io	polars-arrow	`0.51.0`	Cargo.toml
crates.io	pyo3-polars	`0.24.0`	Cargo.toml
crates.io	wasm-bindgen	`0.2.114`	Cargo.toml
crates.io	js-sys	`0.3`	Cargo.toml

All dependencies 538

Full resolved dependency set from the GitHub dependency graph: 17 direct and 521 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

Registry	Package	Version	Relation
crates.io	chrono	`0.4.44`	direct
crates.io	clap	`4.5.60`	direct
crates.io	js-sys	`0.3.91`	direct
crates.io	polars	`0.51.0`	direct
crates.io	polars-arrow	`0.51.0`	direct
crates.io	polars-core	`0.51.0`	direct
crates.io	postcard	`1.1.3`	direct
crates.io	pyo3	`0.25.1`	direct
crates.io	pyo3-polars	`0.24.0`	direct
crates.io	serde	`1.0.228`	direct
crates.io	serde_json	`1.0.149`	direct
crates.io	strum	`0.27.2`	direct
crates.io	strum_macros	`0.27.2`	direct
crates.io	thiserror	`1.0.69`	direct
crates.io	thiserror	`2.0.18`	direct
crates.io	toml	`0.8.23`	direct
crates.io	wasm-bindgen	`0.2.114`	direct
crates.io	adler2	`2.0.1`	indirect
crates.io	aho-corasick	`1.1.4`	indirect
crates.io	allocator-api2	`0.2.21`	indirect
crates.io	android_system_properties	`0.1.5`	indirect
crates.io	anes	`0.1.6`	indirect
crates.io	anstream	`0.6.21`	indirect
crates.io	anstyle	`1.0.13`	indirect
crates.io	anstyle-parse	`0.2.7`	indirect
crates.io	anstyle-query	`1.1.5`	indirect
crates.io	anstyle-wincon	`3.0.11`	indirect
crates.io	anyhow	`1.0.102`	indirect
crates.io	ar_archive_writer	`0.5.1`	indirect
crates.io	argminmax	`0.6.3`	indirect
crates.io	array-init-cursor	`0.2.1`	indirect
crates.io	arrayref	`0.3.9`	indirect
crates.io	arrayvec	`0.7.6`	indirect
crates.io	assert_cmd	`2.1.2`	indirect
crates.io	async-channel	`2.5.0`	indirect
crates.io	async-stream	`0.3.6`	indirect
crates.io	async-stream-impl	`0.3.6`	indirect
crates.io	async-trait	`0.1.89`	indirect
crates.io	atoi_simd	`0.16.1`	indirect
crates.io	atomic-polyfill	`1.0.3`	indirect
crates.io	atomic-waker	`1.1.2`	indirect
crates.io	autocfg	`1.5.0`	indirect
crates.io	base64	`0.22.1`	indirect
crates.io	bincode	`2.0.1`	indirect
crates.io	bincode_derive	`2.0.1`	indirect
crates.io	bitflags	`2.11.0`	indirect
crates.io	blake3	`1.8.3`	indirect
crates.io	block-buffer	`0.10.4`	indirect
crates.io	boxcar	`0.2.14`	indirect
crates.io	bstr	`1.12.1`	indirect
crates.io	bumpalo	`3.20.2`	indirect
crates.io	bytemuck	`1.25.0`	indirect
crates.io	bytemuck_derive	`1.10.2`	indirect
crates.io	byteorder	`1.5.0`	indirect
crates.io	bytes	`1.11.1`	indirect
crates.io	cast	`0.3.0`	indirect
crates.io	castaway	`0.2.4`	indirect
crates.io	cc	`1.2.56`	indirect
crates.io	cfg-if	`1.0.4`	indirect
crates.io	cfg_aliases	`0.2.1`	indirect
crates.io	chacha20	`0.10.2`	indirect
crates.io	chrono-tz	`0.10.4`	indirect
crates.io	ciborium	`0.2.2`	indirect
crates.io	ciborium-io	`0.2.2`	indirect
crates.io	ciborium-ll	`0.2.2`	indirect
crates.io	clap_builder	`4.5.60`	indirect
crates.io	clap_derive	`4.5.55`	indirect
crates.io	clap_lex	`1.0.0`	indirect
crates.io	cobs	`0.3.0`	indirect
crates.io	colorchoice	`1.0.4`	indirect
crates.io	compact_str	`0.9.0`	indirect
crates.io	concurrent-queue	`2.5.0`	indirect
crates.io	constant_time_eq	`0.4.2`	indirect
crates.io	core-foundation	`0.10.1`	indirect
crates.io	core-foundation-sys	`0.8.7`	indirect
crates.io	cpufeatures	`0.2.17`	indirect
crates.io	cpufeatures	`0.3.1`	indirect
crates.io	crc32fast	`1.5.0`	indirect
crates.io	criterion	`0.5.1`	indirect
crates.io	criterion-plot	`0.5.0`	indirect
crates.io	critical-section	`1.2.0`	indirect
crates.io	crossbeam-channel	`0.5.15`	indirect
crates.io	crossbeam-deque	`0.8.6`	indirect
crates.io	crossbeam-epoch	`0.9.18`	indirect
crates.io	crossbeam-queue	`0.3.12`	indirect
crates.io	crossbeam-utils	`0.8.21`	indirect
crates.io	crunchy	`0.2.4`	indirect
crates.io	crypto-common	`0.1.7`	indirect
crates.io	debug_unsafe	`0.1.4`	indirect
crates.io	difflib	`0.4.0`	indirect
crates.io	digest	`0.10.7`	indirect
crates.io	displaydoc	`0.2.5`	indirect
crates.io	dyn-clone	`1.0.20`	indirect
crates.io	either	`1.15.0`	indirect
crates.io	embedded-io	`0.4.0`	indirect
crates.io	embedded-io	`0.6.1`	indirect
crates.io	equivalent	`1.0.2`	indirect
crates.io	errno	`0.3.14`	indirect
crates.io	ethnum	`1.5.3`	indirect
crates.io	event-listener	`5.4.1`	indirect
crates.io	event-listener-strategy	`0.5.4`	indirect
crates.io	fallible-streaming-iterator	`0.1.9`	indirect
crates.io	fast-float2	`0.2.3`	indirect
crates.io	fastrand	`2.3.0`	indirect
crates.io	find-msvc-tools	`0.1.9`	indirect
crates.io	flate2	`1.1.9`	indirect
crates.io	float-cmp	`0.10.0`	indirect
crates.io	fnv	`1.0.7`	indirect
crates.io	foldhash	`0.1.5`	indirect
crates.io	form_urlencoded	`1.2.2`	indirect
crates.io	fs4	`0.13.1`	indirect
crates.io	futures	`0.3.32`	indirect
crates.io	futures-channel	`0.3.32`	indirect
crates.io	futures-core	`0.3.32`	indirect
crates.io	futures-executor	`0.3.32`	indirect
crates.io	futures-io	`0.3.32`	indirect
crates.io	futures-macro	`0.3.32`	indirect
crates.io	futures-sink	`0.3.32`	indirect
crates.io	futures-task	`0.3.32`	indirect
crates.io	futures-util	`0.3.32`	indirect
crates.io	generic-array	`0.14.7`	indirect
crates.io	getrandom	`0.2.17`	indirect
crates.io	getrandom	`0.3.4`	indirect
crates.io	getrandom	`0.4.2`	indirect
crates.io	glob	`0.3.3`	indirect
crates.io	h2	`0.4.13`	indirect
crates.io	half	`2.7.1`	indirect
crates.io	hash32	`0.2.1`	indirect
crates.io	hashbrown	`0.15.5`	indirect
crates.io	hashbrown	`0.16.1`	indirect
crates.io	heapless	`0.7.17`	indirect
crates.io	heck	`0.5.0`	indirect
crates.io	hermit-abi	`0.5.2`	indirect
crates.io	home	`0.5.12`	indirect
crates.io	http	`1.4.0`	indirect
crates.io	http-body	`1.0.1`	indirect
crates.io	http-body-util	`0.1.3`	indirect
crates.io	httparse	`1.10.1`	indirect
crates.io	humantime	`2.3.0`	indirect
crates.io	hyper	`1.8.1`	indirect
crates.io	hyper-rustls	`0.27.7`	indirect
crates.io	hyper-util	`0.1.20`	indirect
crates.io	iana-time-zone	`0.1.65`	indirect
crates.io	iana-time-zone-haiku	`0.1.2`	indirect
crates.io	icu_collections	`2.1.1`	indirect
crates.io	icu_locale_core	`2.1.1`	indirect
crates.io	icu_normalizer	`2.1.1`	indirect
crates.io	icu_normalizer_data	`2.1.1`	indirect
crates.io	icu_properties	`2.1.2`	indirect
crates.io	icu_properties_data	`2.1.2`	indirect
crates.io	icu_provider	`2.1.1`	indirect
crates.io	id-arena	`2.3.0`	indirect
crates.io	idna	`1.1.0`	indirect
crates.io	idna_adapter	`1.2.1`	indirect
crates.io	indexmap	`2.13.0`	indirect
crates.io	indoc	`2.0.7`	indirect
crates.io	inventory	`0.3.22`	indirect
crates.io	ipnet	`2.12.0`	indirect
crates.io	iri-string	`0.7.10`	indirect
crates.io	is-terminal	`0.4.17`	indirect
crates.io	is_terminal_polyfill	`1.70.2`	indirect
crates.io	iter-read	`1.1.0`	indirect
crates.io	itertools	`0.10.5`	indirect
crates.io	itertools	`0.14.0`	indirect
crates.io	itoa	`1.0.17`	indirect
crates.io	jobserver	`0.1.34`	indirect
crates.io	leb128fmt	`0.1.0`	indirect
crates.io	libc	`0.2.183`	indirect
crates.io	libm	`0.2.16`	indirect
crates.io	linux-raw-sys	`0.12.1`	indirect
crates.io	litemap	`0.8.1`	indirect
crates.io	lock_api	`0.4.14`	indirect
crates.io	log	`0.4.29`	indirect
crates.io	lru-slab	`0.1.2`	indirect
crates.io	lz4	`1.28.1`	indirect
crates.io	lz4-sys	`1.11.1+lz4-1.10.0`	indirect
crates.io	memchr	`2.8.0`	indirect
crates.io	memmap2	`0.9.10`	indirect
crates.io	memoffset	`0.9.1`	indirect
crates.io	minicov	`0.3.8`	indirect
crates.io	miniz_oxide	`0.8.9`	indirect
crates.io	mio	`1.1.1`	indirect
crates.io	normalize-line-endings	`0.3.0`	indirect
crates.io	now	`0.1.3`	indirect
crates.io	nu-ansi-term	`0.50.3`	indirect
crates.io	num-bigint	`0.4.6`	indirect
crates.io	num-integer	`0.1.46`	indirect
crates.io	num-traits	`0.2.19`	indirect
crates.io	object	`0.37.3`	indirect
crates.io	object_store	`0.12.5`	indirect
crates.io	once_cell	`1.21.3`	indirect
crates.io	once_cell_polyfill	`1.70.2`	indirect
crates.io	oorandom	`11.1.5`	indirect
crates.io	openssl-probe	`0.2.1`	indirect
crates.io	parking	`2.2.1`	indirect
crates.io	parking_lot	`0.12.5`	indirect
crates.io	parking_lot_core	`0.9.12`	indirect
crates.io	percent-encoding	`2.3.2`	indirect
crates.io	phf	`0.12.1`	indirect
crates.io	phf_shared	`0.12.1`	indirect
crates.io	pin-project-lite	`0.2.17`	indirect
crates.io	pin-utils	`0.1.0`	indirect
crates.io	pkg-config	`0.3.32`	indirect
crates.io	planus	`1.1.1`	indirect
crates.io	plotters	`0.3.7`	indirect
crates.io	plotters-backend	`0.3.7`	indirect
crates.io	plotters-svg	`0.3.7`	indirect
crates.io	polars-arrow-format	`0.2.1`	indirect
crates.io	polars-compute	`0.51.0`	indirect
crates.io	polars-dtype	`0.51.0`	indirect
crates.io	polars-error	`0.51.0`	indirect
crates.io	polars-expr	`0.51.0`	indirect
crates.io	polars-ffi	`0.51.0`	indirect
crates.io	polars-io	`0.51.0`	indirect
crates.io	polars-lazy	`0.51.0`	indirect
crates.io	polars-mem-engine	`0.51.0`	indirect
crates.io	polars-ops	`0.51.0`	indirect
crates.io	polars-parquet	`0.51.0`	indirect
crates.io	polars-parquet-format	`0.1.0`	indirect
crates.io	polars-plan	`0.51.0`	indirect
crates.io	polars-row	`0.51.0`	indirect
crates.io	polars-schema	`0.51.0`	indirect
crates.io	polars-stream	`0.51.0`	indirect
crates.io	polars-time	`0.51.0`	indirect
crates.io	polars-utils	`0.51.0`	indirect
crates.io	portable-atomic	`1.13.1`	indirect
crates.io	potential_utf	`0.1.4`	indirect
crates.io	ppv-lite86	`0.2.21`	indirect
crates.io	predicates	`3.1.4`	indirect
crates.io	predicates-core	`1.0.10`	indirect
crates.io	predicates-tree	`1.0.13`	indirect
crates.io	prettyplease	`0.2.37`	indirect
crates.io	proc-macro2	`1.0.106`	indirect
crates.io	psm	`0.1.30`	indirect
crates.io	pyo3-build-config	`0.25.1`	indirect
crates.io	pyo3-ffi	`0.25.1`	indirect
crates.io	pyo3-macros	`0.25.1`	indirect
crates.io	pyo3-macros-backend	`0.25.1`	indirect
crates.io	pyo3-polars-derive	`0.18.0`	indirect
crates.io	quick-xml	`0.38.4`	indirect
crates.io	quinn	`0.11.9`	indirect
crates.io	quinn-proto	`0.11.19`	indirect
crates.io	quinn-udp	`0.5.14`	indirect
crates.io	quote	`1.0.45`	indirect
crates.io	r-efi	`5.3.0`	indirect
crates.io	r-efi	`6.0.0`	indirect
crates.io	rand	`0.10.3`	indirect
crates.io	rand	`0.9.5`	indirect
crates.io	rand_chacha	`0.9.0`	indirect
crates.io	rand_core	`0.10.1`	indirect
crates.io	rand_core	`0.9.5`	indirect
crates.io	rand_distr	`0.5.1`	indirect
crates.io	rand_pcg	`0.10.2`	indirect
crates.io	raw-cpuid	`11.6.0`	indirect
crates.io	rayon	`1.11.0`	indirect
crates.io	rayon-core	`1.13.0`	indirect
crates.io	recursive	`0.1.1`	indirect
crates.io	recursive-proc-macro-impl	`0.1.1`	indirect
crates.io	redox_syscall	`0.5.18`	indirect
crates.io	regex	`1.12.3`	indirect
crates.io	regex-automata	`0.4.14`	indirect
crates.io	regex-syntax	`0.8.10`	indirect
crates.io	reqwest	`0.12.28`	indirect
crates.io	ring	`0.17.14`	indirect
crates.io	rmp	`0.8.15`	indirect
crates.io	rmp-serde	`1.3.1`	indirect
crates.io	rustc-hash	`2.1.1`	indirect
crates.io	rustc_version	`0.4.1`	indirect
crates.io	rustix	`1.1.4`	indirect
crates.io	rustls	`0.23.45`	indirect
crates.io	rustls-native-certs	`0.8.3`	indirect
crates.io	rustls-pki-types	`1.14.0`	indirect
crates.io	rustls-webpki	`0.103.15`	indirect
crates.io	rustversion	`1.0.22`	indirect
crates.io	ryu	`1.0.23`	indirect
crates.io	same-file	`1.0.6`	indirect
crates.io	schannel	`0.1.28`	indirect
crates.io	scopeguard	`1.2.0`	indirect
crates.io	security-framework	`3.7.0`	indirect
crates.io	security-framework-sys	`2.17.0`	indirect
crates.io	semver	`1.0.27`	indirect
crates.io	serde-pickle	`1.2.0`	indirect
crates.io	serde_core	`1.0.228`	indirect
crates.io	serde_derive	`1.0.228`	indirect
crates.io	serde_spanned	`0.6.9`	indirect
crates.io	serde_stacker	`0.1.14`	indirect
crates.io	serde_urlencoded	`0.7.1`	indirect
crates.io	sha2	`0.10.9`	indirect
crates.io	shlex	`1.3.0`	indirect
crates.io	signal-hook	`0.3.18`	indirect
crates.io	signal-hook-registry	`1.4.8`	indirect
crates.io	simd-adler32	`0.3.8`	indirect
crates.io	simdutf8	`0.1.5`	indirect
crates.io	siphasher	`1.0.2`	indirect
crates.io	skiplist	`0.6.0`	indirect
crates.io	slab	`0.4.12`	indirect
crates.io	slotmap	`1.1.1`	indirect
crates.io	smallvec	`1.15.1`	indirect
crates.io	socket2	`0.6.3`	indirect
crates.io	spin	`0.9.9`	indirect
crates.io	stable_deref_trait	`1.2.1`	indirect
crates.io	stacker	`0.1.23`	indirect
crates.io	static_assertions	`1.1.0`	indirect
crates.io	streaming-decompression	`0.1.2`	indirect
crates.io	streaming-iterator	`0.1.9`	indirect
crates.io	strength_reduce	`0.2.4`	indirect
crates.io	strsim	`0.11.1`	indirect
crates.io	subtle	`2.6.1`	indirect
crates.io	syn	`2.0.117`	indirect
crates.io	sync_wrapper	`1.0.2`	indirect
crates.io	synstructure	`0.13.2`	indirect
crates.io	target-lexicon	`0.13.5`	indirect
crates.io	tempfile	`3.26.0`	indirect
crates.io	termtree	`0.5.1`	indirect
crates.io	thiserror-impl	`1.0.69`	indirect
crates.io	thiserror-impl	`2.0.18`	indirect
crates.io	tinystr	`0.8.2`	indirect
crates.io	tinytemplate	`1.2.1`	indirect
crates.io	tinyvec	`1.10.0`	indirect
crates.io	tinyvec_macros	`0.1.1`	indirect
crates.io	tokio	`1.50.0`	indirect
crates.io	tokio-macros	`2.6.1`	indirect
crates.io	tokio-rustls	`0.26.4`	indirect
crates.io	tokio-util	`0.7.18`	indirect
crates.io	toml_datetime	`0.6.11`	indirect
crates.io	toml_edit	`0.22.27`	indirect
crates.io	toml_write	`0.1.2`	indirect
crates.io	tower	`0.5.3`	indirect
crates.io	tower-http	`0.6.8`	indirect
crates.io	tower-layer	`0.3.3`	indirect
crates.io	tower-service	`0.3.3`	indirect
crates.io	tracing	`0.1.44`	indirect
crates.io	tracing-attributes	`0.1.31`	indirect
crates.io	tracing-core	`0.1.36`	indirect
crates.io	try-lock	`0.2.5`	indirect
crates.io	typenum	`1.19.0`	indirect
crates.io	unicode-ident	`1.0.24`	indirect
crates.io	unicode-xid	`0.2.6`	indirect
crates.io	unindent	`0.2.4`	indirect
crates.io	untrusted	`0.9.0`	indirect
crates.io	unty	`0.0.4`	indirect
crates.io	url	`2.5.8`	indirect
crates.io	utf8_iter	`1.0.4`	indirect
crates.io	utf8parse	`0.2.2`	indirect
crates.io	uuid	`1.22.0`	indirect
crates.io	version_check	`0.9.5`	indirect
crates.io	virtue	`0.0.18`	indirect
crates.io	wait-timeout	`0.2.1`	indirect
crates.io	walkdir	`2.5.0`	indirect
crates.io	want	`0.3.1`	indirect
crates.io	wasi	`0.11.1+wasi-snapshot-preview1`	indirect
crates.io	wasip2	`1.0.2+wasi-0.2.9`	indirect
crates.io	wasip3	`0.4.0+wasi-0.3.0-rc-2026-01-06`	indirect
crates.io	wasm-bindgen-futures	`0.4.64`	indirect
crates.io	wasm-bindgen-macro	`0.2.114`	indirect
crates.io	wasm-bindgen-macro-support	`0.2.114`	indirect
crates.io	wasm-bindgen-shared	`0.2.114`	indirect
crates.io	wasm-bindgen-test	`0.3.64`	indirect
crates.io	wasm-bindgen-test-macro	`0.3.64`	indirect
crates.io	wasm-bindgen-test-shared	`0.2.114`	indirect
crates.io	wasm-encoder	`0.244.0`	indirect
crates.io	wasm-metadata	`0.244.0`	indirect
crates.io	wasm-streams	`0.4.2`	indirect
crates.io	wasmparser	`0.244.0`	indirect
crates.io	web-sys	`0.3.91`	indirect
crates.io	web-time	`1.1.0`	indirect
crates.io	winapi-util	`0.1.11`	indirect
crates.io	windows-core	`0.62.2`	indirect
crates.io	windows-implement	`0.60.2`	indirect
crates.io	windows-interface	`0.59.3`	indirect
crates.io	windows-link	`0.2.1`	indirect
crates.io	windows-result	`0.4.1`	indirect
crates.io	windows-strings	`0.5.1`	indirect
crates.io	windows-sys	`0.52.0`	indirect
crates.io	windows-sys	`0.59.0`	indirect
crates.io	windows-sys	`0.60.2`	indirect
crates.io	windows-sys	`0.61.2`	indirect
crates.io	windows-targets	`0.52.6`	indirect
crates.io	windows-targets	`0.53.5`	indirect
crates.io	windows_aarch64_gnullvm	`0.52.6`	indirect
crates.io	windows_aarch64_gnullvm	`0.53.1`	indirect
crates.io	windows_aarch64_msvc	`0.52.6`	indirect
crates.io	windows_aarch64_msvc	`0.53.1`	indirect
crates.io	windows_i686_gnu	`0.52.6`	indirect
crates.io	windows_i686_gnu	`0.53.1`	indirect
crates.io	windows_i686_gnullvm	`0.52.6`	indirect
crates.io	windows_i686_gnullvm	`0.53.1`	indirect
crates.io	windows_i686_msvc	`0.52.6`	indirect
crates.io	windows_i686_msvc	`0.53.1`	indirect
crates.io	windows_x86_64_gnu	`0.52.6`	indirect
crates.io	windows_x86_64_gnu	`0.53.1`	indirect
crates.io	windows_x86_64_gnullvm	`0.52.6`	indirect
crates.io	windows_x86_64_gnullvm	`0.53.1`	indirect
crates.io	windows_x86_64_msvc	`0.52.6`	indirect
crates.io	windows_x86_64_msvc	`0.53.1`	indirect
crates.io	winnow	`0.7.15`	indirect
crates.io	wit-bindgen	`0.51.0`	indirect
crates.io	wit-bindgen-core	`0.51.0`	indirect
crates.io	wit-bindgen-rust	`0.51.0`	indirect
crates.io	wit-bindgen-rust-macro	`0.51.0`	indirect
crates.io	wit-component	`0.244.0`	indirect
crates.io	wit-parser	`0.244.0`	indirect
crates.io	writeable	`0.6.2`	indirect
crates.io	xxhash-rust	`0.8.19`	indirect
crates.io	yoke	`0.8.1`	indirect
crates.io	yoke-derive	`0.8.1`	indirect
crates.io	zerocopy	`0.8.41`	indirect
crates.io	zerocopy-derive	`0.8.41`	indirect
crates.io	zerofrom	`0.1.6`	indirect
crates.io	zerofrom-derive	`0.1.6`	indirect
crates.io	zeroize	`1.8.2`	indirect
crates.io	zerotrie	`0.2.3`	indirect
crates.io	zerovec	`0.11.5`	indirect
crates.io	zerovec-derive	`0.11.2`	indirect
crates.io	zmij	`1.0.21`	indirect
crates.io	zstd	`0.13.3`	indirect
crates.io	zstd-safe	`7.2.4`	indirect
crates.io	zstd-sys	`2.0.16+zstd.1.5.7`	indirect
PyPI	anarcii	`2.0.5`	indirect
PyPI	annotated-doc	`0.0.4`	indirect
PyPI	antpack	`0.2.7`	indirect
PyPI	babel	`2.18.0`	indirect
PyPI	backrefs	`6.2`	indirect
PyPI	biom-format	`2.1.17`	indirect
PyPI	biopython	`1.88`	indirect
PyPI	certifi	`2026.2.25`	indirect
PyPI	cfgv	`3.5.0`	indirect
PyPI	charset-normalizer	`3.4.6`	indirect
PyPI	click	`8.3.1`	indirect
PyPI	colorama	`0.4.6`	indirect
PyPI	coverage	`7.13.5`	indirect
PyPI	cuda-bindings	`13.4.3`	indirect
PyPI	cuda-pathfinder	`1.4.3`	indirect
PyPI	cuda-toolkit	`13.0.3.0`	indirect
PyPI	decorator	`5.2.1`	indirect
PyPI	distlib	`0.4.0`	indirect
PyPI	exceptiongroup	`1.3.1`	indirect
PyPI	execnet	`2.1.2`	indirect
PyPI	filelock	`3.25.2`	indirect
PyPI	fsspec	`2026.9.0`	indirect
PyPI	gemmi	`0.7.5`	indirect
PyPI	ghp-import	`2.1.0`	indirect
PyPI	go-task-bin	`3.49.1`	indirect
PyPI	griffelib	`2.0.0`	indirect
PyPI	h5py	`3.16.0`	indirect
PyPI	hypothesis	`6.151.9`	indirect
PyPI	identify	`2.6.18`	indirect
PyPI	idna	`3.20`	indirect
PyPI	iniconfig	`2.3.0`	indirect
PyPI	jinja2	`3.1.6`	indirect
PyPI	markdown	`3.10.2`	indirect
PyPI	markdown-it-py	`3.0.0`	indirect
PyPI	markupsafe	`3.0.3`	indirect
PyPI	mdurl	`0.1.2`	indirect
PyPI	mergedeep	`1.3.4`	indirect
PyPI	mkdocs	`1.6.1`	indirect
PyPI	mkdocs-autorefs	`1.4.4`	indirect
PyPI	mkdocs-get-deps	`0.2.2`	indirect
PyPI	mkdocs-material	`9.7.7`	indirect
PyPI	mkdocs-material-extensions	`1.3.1`	indirect
PyPI	mkdocstrings	`1.0.3`	indirect
PyPI	mkdocstrings-python	`2.0.3`	indirect
PyPI	mpmath	`1.3.0`	indirect
PyPI	msgpack	`1.2.3`	indirect
PyPI	natsort	`8.4.0`	indirect
PyPI	networkx	`3.4.2`	indirect
PyPI	networkx	`3.6.1`	indirect
PyPI	nodeenv	`1.10.0`	indirect
PyPI	numpy	`2.2.6`	indirect
PyPI	numpy	`2.4.3`	indirect
PyPI	nvidia-cublas	`13.1.1.3`	indirect
PyPI	nvidia-cuda-cupti	`13.0.85`	indirect
PyPI	nvidia-cuda-nvrtc	`13.0.88`	indirect
PyPI	nvidia-cuda-runtime	`13.0.96`	indirect
PyPI	nvidia-cudnn-cu13	`9.24.0.43`	indirect
PyPI	nvidia-cufft	`12.0.0.61`	indirect
PyPI	nvidia-cufile	`1.15.1.6`	indirect
PyPI	nvidia-curand	`10.4.0.35`	indirect
PyPI	nvidia-cusolver	`12.0.4.66`	indirect
PyPI	nvidia-cusparse	`12.6.3.3`	indirect
PyPI	nvidia-cusparselt-cu13	`0.8.1`	indirect
PyPI	nvidia-nccl-cu13	`2.30.7`	indirect
PyPI	nvidia-nvjitlink	`13.4.92`	indirect
PyPI	nvidia-nvshmem-cu13	`3.4.5`	indirect
PyPI	nvidia-nvtx	`13.0.85`	indirect
PyPI	packaging	`26.0`	indirect
PyPI	paginate	`0.5.7`	indirect
PyPI	pandas	`2.3.3`	indirect
PyPI	pandas	`3.0.1`	indirect
PyPI	pandas-stubs	`2.3.3.260113`	indirect
PyPI	pandas-stubs	`3.0.0.260204`	indirect
PyPI	pathspec	`1.0.4`	indirect
PyPI	patsy	`1.0.2`	indirect
PyPI	platformdirs	`4.9.4`	indirect
PyPI	pluggy	`1.6.0`	indirect
PyPI	polars	`2.0.0`	indirect
PyPI	polars-runtime-32	`2.0.0`	indirect
PyPI	pre-commit	`4.5.1`	indirect
PyPI	psutil	`5.9.8`	indirect
PyPI	py-cpuinfo	`9.0.0`	indirect
PyPI	pybind11	`3.0.2`	indirect
PyPI	pygments	`2.20.0`	indirect
PyPI	pymdown-extensions	`11.0.2`	indirect
PyPI	pyrefly	`0.57.0`	indirect
PyPI	pysentry-rs	`0.4.6`	indirect
PyPI	pytest	`9.0.3`	indirect
PyPI	pytest-benchmark	`5.2.3`	indirect
PyPI	pytest-markdown-docs	`0.9.1`	indirect
PyPI	pytest-xdist	`3.8.0`	indirect
PyPI	python-dateutil	`2.9.0.post0`	indirect
PyPI	python-discovery	`1.6.1`	indirect
PyPI	pytz	`2026.1.post1`	indirect
PyPI	pyyaml	`6.0.3`	indirect
PyPI	pyyaml-env-tag	`1.1`	indirect
PyPI	requests	`2.34.2`	indirect
PyPI	rich	`14.3.3`	indirect
PyPI	rtoml	`0.14.0`	indirect
PyPI	ruff	`0.15.6`	indirect
PyPI	scikit-bio	`0.6.2`	indirect
PyPI	scipy	`1.15.3`	indirect
PyPI	scipy	`1.17.1`	indirect
PyPI	setuptools	`84.0.0`	indirect
PyPI	shellingham	`1.5.4`	indirect
PyPI	six	`1.17.0`	indirect
PyPI	sortedcontainers	`2.4.0`	indirect
PyPI	statsmodels	`0.14.6`	indirect
PyPI	sympy	`1.14.0`	indirect
PyPI	tomli	`2.4.0`	indirect
PyPI	torch	`2.14.1`	indirect
PyPI	triton	`3.8.0`	indirect
PyPI	ty	`0.0.23`	indirect
PyPI	typer	`0.24.1`	indirect
PyPI	types-pytz	`2026.1.1.20260304`	indirect
PyPI	typing-extensions	`4.15.0`	indirect
PyPI	tzdata	`2025.3`	indirect
PyPI	urllib3	`2.8.0`	indirect
PyPI	virtualenv	`21.14.5`	indirect
PyPI	watchdog	`6.0.0`	indirect

Dependency advisories 14

This repository publishes no package the index resolves, so its own dependency graph was assessed — 538 packages, which also include development and test pins that never ship: 14 carry known advisories, of which 1 are direct.

Package	Version	Relation	Severity	Advisories	Fixed in
pyo3	`0.25.1`	direct	high	4	`0.29.0`
certifi	`2026.2.25`	indirect	high	2	`2026.10.19`
quick-xml	`0.38.4`	indirect	high	2	`0.41.0`
virtualenv	`21.14.5`	indirect	high	4	`21.14.9`
rustls	`0.23.45`	indirect	moderate	4	`0.23.46`
anyhow	`1.0.102`	indirect	unknown	1	`1.0.103`
atomic-polyfill	`1.0.3`	indirect	unknown	1	—
bincode	`2.0.1`	indirect	unknown	1	—
crossbeam-epoch	`0.9.18`	indirect	unknown	1	`0.9.20`
event-listener	`5.4.1`	indirect	unknown	1	`5.4.2`
h2	`0.4.13`	indirect	unknown	1	`0.4.16`
memmap2	`0.9.10`	indirect	unknown	1	`0.9.11`
rustls-webpki	`0.103.15`	indirect	unknown	1	`0.104.0-alpha.8`
skiplist	`0.6.0`	indirect	unknown	1	`1.1.1`

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

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