Public record
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-26 22:11 UTC

PacificBiosciences / pbcopper

Core C++ library for data structures, algorithms, and utilities

C++BSD-3-Clause-Clear★ 5 stars⑂ 5 forkssince Jun 2016archivedView on GitHub ↗

PacificBiosciences/pbcopper holds a health index of 15 out of 100, placing it in the Critical band. It scores highest on Sustainability & Governance (59/100) and lowest on Vitality (18/100). The repository is archived, so no further maintenance is expected.

15
overall / 100
Critical

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.

15
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

Abandonment Policy applies a 40% multiplier to weighted overall health and gives it a ceiling of 29.

Ownership

PacBioOrganization
495 followers113 public repossince Aug 2011

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

18Critical · 22% of overall
How it's scored
0/36Push recency — last push 1,073 days ago
0/36Commit cadence — 0/52 weeks with commits
0/18Commit volume — 0 commits in the last year
0/10OpenSSF Scorecard: Maintained — project is archived
Inputs used
commits_last_year0
human_commit_share1
days_since_last_push1,073
active_weeks_last_year0
How it's scored
27/27Ships releases — 6 releases published
0/36Release recency — latest release 1,612 days ago
12.6/27Release cadence — a release every ~271.8 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count6
latest_release_tagv2.0.0
releases_from_tagsno
days_since_latest_release1,612
mean_days_between_releases271.8
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

33At risk · 18% of overall
How it's scored
9.8/60Stars — 5 stars
5/25Forks — 5 forks
3.9/15Watchers — 6 watchers
Inputs used
forks5
stars5
watchers6
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (BSD-3-Clause-Clear)
0/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
has_contributingno
has_issue_templateno
has_code_of_conductno
has_pull_request_templateno

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

59Moderate · 24% of overall
How it's scored
25.2/54Bus factor — 2 contributor(s) cover half of all commits
13.6/22.5Commit distribution — top contributor authored 39% of commits
12.2/13.5Contributor breadth — 9 contributors
10/10OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations
Inputs used
bus_factor2
contributors_sampled9
top_contributor_share0.394
How it's scored
0/46.8Issue resolution — no issues or no data
22.9/38.3PR acceptance — 6/10 decided PRs merged
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs6
open_issues0
closed_issues0
issue_closed_ratio
closed_unmerged_prs4
Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
19.4/25Owner reach — 495 followers of PacificBiosciences
25/25Track record — 113 public repos, account ~14 yr old
Inputs used
followers495
owner_typeOrganization
is_verified
owner_loginPacificBiosciences
public_repos113
account_age_days5,451

Engineering Quality

Are baseline engineering and documentation practices in place?

44At risk · 20% of overall
How it's scored
0/24CI workflows
24/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
0/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — no data
Inputs used
has_cino
has_testsyes
has_editorconfigno
has_linter_configno
has_precommit_configno
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.

Documentation

65Moderate
How it's scored
30/30README
25/25Documentation directory
0/15Documentation / homepage site
10/10Repository description
0/10Topics
0/10Wiki
Inputs used
topics
has_wikino
homepage
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

27Critical · 16% of overall
How it's scored
6/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — no data
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 4 contributing companies or organizations
0/10Dangerous-Workflow — no data
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
0/7.5Maintained — project is archived
0/5Packaging — no data
0/5Pinned-Dependencies — no data
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — no data
0/7.5Token-Permissions — no data
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated12
scorecard_versionv5.5.0
checks_inconclusive6
scorecard_aggregate2.7
Excluded from scoring (no data or not applicable): ci_tests, dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions. Remaining weights renormalized.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.

37At risk · 0% of overall
How it's scored
0/45Agent instructions — no CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
6.9/40Legible commit history — 13 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
legible_history_share0.13
agent_instruction_files
agent_instruction_max_bytes
How it's scored
0/18One-command bootstrap
22/22Automated tests
0/11Lint / format config
11/11Static type checking — C++ (statically typed)
0/10Reproducible environment
0/10Demonstrated agent practice — no agent-authored commits among the last 100
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — no data
Inputs used
has_nixno
has_testsyes
lockfiles
has_dockerfileno
typed_languageyes
bootstrap_files
has_devcontainerno
has_linter_configno
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.
How it's scored
45/45Type-checkable code — C++ (statically typed)
53.6/55Manageable file sizes — 18/693 source files over 60KB
Inputs used
primary_languageC++
largest_source_bytes907,858
source_files_sampled693
oversized_source_files18

Key facts

5GitHub stars
9contributors
0commits, last 12 months
1,073days since last push
6releases
2bus factor
0open issues
package ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository

More detail

Star and fork history 0 ★ / 5 ⇿
0Stars
5Forks
2Releases

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

12345532020-062020-112021-04
Major 0Minor 2Patch 0
OpenSSF Scorecard 2.7 / 10
2.7aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-26 22:11 UTC

8Binary-Artifactsbinaries present in source code
0Branch-Protectionbranch protection not enabled on development/release branches
n/aCI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
10Contributorsproject has 4 contributing companies or organizations
n/aDangerous-Workflowno workflows found
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
0Maintainedproject is archived
n/aPackagingpackaging workflow not detected
n/aPinned-Dependenciesno dependencies found
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
n/aToken-PermissionsNo tokens found
10Vulnerabilities0 existing vulnerabilities detected
All dependencies not collected

The resolved dependency set could not be collected for this report: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository

Raw JSON report machine-readable
{
  "data": {
    "repo": {
      "topics": [],
      "is_fork": false,
      "size_kb": 8916,
      "has_wiki": false,
      "homepage": null,
      "languages": {
        "C": 40959,
        "C++": 1498168,
        "Meson": 22725,
        "Shell": 8389
      },
      "pushed_at": "2023-08-18T15:34:21Z",
      "created_at": "2016-06-22T23:08:45Z",
      "owner_type": "Organization",
      "updated_at": "2024-05-02T08:10:31Z",
      "description": "Core C++ library for data structures, algorithms, and utilities",
      "is_archived": true,
      "is_disabled": false,
      "license_spdx": "BSD-3-Clause-Clear",
      "default_branch": "develop",
      "license_spdx_raw": "BSD-3-Clause-Clear",
      "primary_language": "C++",
      "significant_languages": [
        "C++"
      ]
    },
    "owner": {
      "blog": "http://pacb.com",
      "name": "PacBio",
      "type": "Organization",
      "login": "PacificBiosciences",
      "company": null,
      "location": null,
      "followers": 495,
      "avatar_url": "https://avatars.githubusercontent.com/u/999745?v=4",
      "created_at": "2011-08-23T18:56:16Z",
      "is_verified": null,
      "public_repos": 113,
      "account_age_days": 5451
    },
    "license": {
      "state": "standard",
      "spdx_id": "BSD-3-Clause-Clear",
      "raw_spdx": "BSD-3-Clause-Clear",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v2.0.0",
          "kind": "major",
          "published_at": "2022-02-25T09:32:21Z"
        },
        {
          "tag": "v1.9.0",
          "kind": "minor",
          "published_at": "2020-12-22T19:21:32Z"
        },
        {
          "tag": "v1.8.0",
          "kind": "minor",
          "published_at": "2020-09-23T06:40:12Z"
        },
        {
          "tag": "v1.4.0",
          "kind": "minor",
          "published_at": "2020-02-18T19:11:28Z"
        },
        {
          "tag": "v1.3.0",
          "kind": "minor",
          "published_at": "2019-08-26T15:55:56Z"
        },
        {
          "tag": "0.4.1",
          "kind": "patch",
          "published_at": "2018-06-07T14:44:10Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "a9b1ffab97c37fd03264382627081a0ada4d0b84",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-548] FaF Dispatch, simplify logic",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-08-14T21:56:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "53e48e92dc16387e58d0d8fb829dda6078989636",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-533] Unique symbols as minimap2.26 also exports them",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-08-08T12:41:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2ca839b10caaca189bd39b098d8f6a2eb14ccace",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-525] Add block logging and log level alignment",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-08-01T13:44:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c046eea207d1089767f3b5ebfe3e731310b7c02f",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-241] utility/Intrinsics.h: make nvcc constexpr friendly",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-07-10T13:11:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ff0d89492fadb1dda954b6d7bef2b4fcc7bf0cae",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-241] utility/Intrinsics.h: stratify unit tests by {u,}intX_t types",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-07-07T14:52:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "307055e9036a377fc06713862ece03a14aa0ae2d",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-241] utility/Intrinsics.h: enable for CUDA",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-07-07T14:52:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "97102d5d66c89caeb2813f579c61a8d274d216af",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] FaF::Dispatch, wait for all jobs to finish if aborting",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21c380448b1f0deeac290e874c7d7f0c9d08ccab",
          "body": "…on every ProduceWith",
          "is_bot": false,
          "headline": "[BFX-382] WorkQueue store first exception only, finalize once, throw …",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "34d47e1dbc1e58ec8c83cdbaf0787b8af7ccd01e",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] Add FaF test for destructor",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eafe4fedfa1519c1c9293cf7a6bfa2ba25476ca3",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] FaF::Dispatch better exception handling",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c40f3d69cae6584091b9661e58e0257c9b556d09",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] Only finalize once, simplify destructor",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cbc30b9617d7f6ade8ec0de9853939ba7ad39bfb",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] Only store the first exception and throw every ProduceWith",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T11:08:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2ba976ad73e4c06950e71192c7da8e51477436c0",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-392] Add reports JSON EOL",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T10:05:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "aec500779523c1755758921d93eb484b24aee479",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-392] Add alarms JSON EOL",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-07T10:05:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5ac5693f7cc9c5330047b67d2dc9522aa0c516ae",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-341] Fix `-Wredundant-move`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-06-02T20:30:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "93ac4f1d004502644a89e0a1517ab977e5500fc3",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] Add missing <cstdint>",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-02T08:40:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6bec3493c8e43052dd1c98e109cf41379bbb271",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-382] Shutdown threadpool gracefully",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-06-01T20:08:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "07b15b783213cd850961d877aa9955502e1c8638",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-341] Fully qualify `<cstdio>` types",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-30T17:10:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "205451e46132b28d0886cad8960f3483142d4a5a",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-341] Fully qualify `<cstdint>` types",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-30T17:10:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4eb7ac8a1b84503d0f5b5202656014b35895f0c1",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-362] Add QV clipping to Data::Read::ClipTo()",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-05-25T19:26:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "072d67bca46748692a3e26b84342d1b43465dacb",
          "body": "https://eel.is/c++draft/support.c.headers.other#1",
          "is_bot": false,
          "headline": "[BFX-341] Fully qualify `<cstdint>` types",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-17T18:53:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "19b06799f12a39ad6e69bf93139b252bb8ed31e0",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-341] Fully qualify `<cstddef>` types",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-17T18:53:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6a2ff9aec24a7da852c74440bb9a091e564c2962",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-275] Define `PB_CUDA_FULL_MASK` as constant for warp shuffles",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-08T21:02:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a4b99d8aa20299486fe73ee37e4507bed88c959e",
          "body": "…rojects",
          "is_bot": false,
          "headline": "[BFX-275] Define `PB_CUDA_WARP_SIZE` as global warp size for all PB p…",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-08T10:41:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9c3329507081d0d484a3833d7197b0ccfa777be0",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-275] Add `Numeric::RoundDownToNextMultiple`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-06T08:53:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de743e65b68704d066df14f72fdc5d5a0d7693f4",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-275] Add `numeric`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-03T09:53:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1de975fa45565758e626821e0e9daa3ba7d935dd",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-275] Add `cuda/ThreadBlockHelper.h`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-05-03T09:53:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "445ed0a90bc308ae732e4e211b09957bc32f8b2d",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-258] Develop version 2.3.99",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-04-24T06:49:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "158fcd9bdf9cbfc5b9d03d374a94de082124b44c",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-258] Release version 2.3.0",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-04-24T06:49:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f5fab7ebd5c2c34f409c921326ddeae98f99b50d",
          "body": "* Still needed since CUDA is still on C++17.",
          "is_bot": false,
          "headline": "[BFX-180] `constexpr` workarounds for C++17",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-04-18T12:18:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "53a6c562d565e3fc3fa8db5644e5d85dd4bc3944",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-192] Update gtest.wrap",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-04-01T10:59:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a20b268b6dd9d4d853aabb2768eed2a7272a5703",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-190] Update nlohmann/json to 3.11.2",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-03-28T09:42:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8c66e5b2bb57e8422a94f97a80510e0d83f2e5ed",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-190] Move nlohmann/json out of include/",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-03-28T09:42:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ed7c71b3dae699c33114b6a4a47474b5c677ff7c",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-180] `std::string` -> `std::filesystem::path`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-03-24T20:31:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "48dfb1e636a132faf12dac17309552a9c80cb574",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-180] `std::sprintf` -> `std::snprintf`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-03-19T14:36:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de47bd762b51e2e4bef849926b8801e281622857",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-53] Move empty alarm filename check to Alarm API, not CLI runner",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-03-06T04:18:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "18475ca6730877ecf98f54fbb9f0d38b3f248a6b",
          "body": "API symmetry with options",
          "is_bot": false,
          "headline": "[BFX-54] Allow description array in positional args",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-03-03T21:38:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "56bff4debe31cb1b493977cfaa59394b799c2556",
          "body": null,
          "is_bot": false,
          "headline": "[BFX-53] Indicate empty alarm filename if alarm exception is thrown",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-03-03T19:56:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad8e9b6a6fcf2c1af7cc4b4f934c5e1f784103d0",
          "body": "Print help/usage if missing",
          "is_bot": false,
          "headline": "[BFX-123] Add early CLI check for required options",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-02-23T22:02:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c1f21560306db9094c6c310371458a7d7c1ff66f",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1739] Update year in disclaimer",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-01-18T22:34:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "468d87020b2c7cbabaa0955839ba3c1adaec7fc6",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5923] Recalculate reference for HD finder",
          "author_name": "Jessica Mattick",
          "author_login": null,
          "committed_at": "2023-01-09T06:04:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1d140b4fb617715a4b38cd803a2211c23e68dca3",
          "body": "* Also allow lowercase characters",
          "is_bot": false,
          "headline": "[TAK-1794] Allow complement/checking in `Container::ConvertAsciiTo2bit`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-01-08T09:32:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "68db83c62502acf9f3d06c3972ff84cfcf6a39c8",
          "body": "* Discovered while debugging Unanimity and diffing GPU output on\n  different machines.",
          "is_bot": false,
          "headline": "[TAK-1745] Default initialize `Data::MappedRead::RefId`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2023-01-08T09:32:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "84f8c01a214355c89c1a309abfd5cf0bedc4eb1b",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1798] FaF hangs if there's no FaF API interaction after exception",
          "author_name": "Armin Toepfer",
          "author_login": "armintoepfer",
          "committed_at": "2023-01-06T15:01:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "748cea85172bec658f296e1a58da08372dec768e",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5920] Release version 2.2.0",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2023-01-03T22:01:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "763cca8d449acde7847a1209437693b2c30b940f",
          "body": "… uncaught exceptions trigger terminate()",
          "is_bot": false,
          "headline": "[TAG-5874] Print error message on CLI parsing errors, rather than let…",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-12-06T20:37:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "07cc12bc8ab2c7554e59c1b4a3b0c4961523030a",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1754] Clarify CLI interface setup error messages",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-10-18T14:48:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3292ab89debc72c5ea4a9b470a901a6e95631388",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1754] Fix member name style in CLI structs",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-10-17T15:48:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3f4466ee7e096d86b60e385432a34b43776e4063",
          "body": "https://isocpp.github.io/CppCoreGuidelines/CppCoreGuidelines#e15-throw-by-value-catch-exceptions-from-a-hierarchy-by-reference",
          "is_bot": false,
          "headline": "[TAK-1737] Catch by const-ref",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T11:44:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d889c3eeb22a5ec1dfef2d2bedbc715c4b1ac6d",
          "body": "* These don't actually affect GTest.",
          "is_bot": false,
          "headline": "[TAK-1737] Remove useless gtest environment variables",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T11:44:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "07cc02066887e9e27c58ee80509d054c110fae69",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1737] `boost::variant` -> C++17 `std::variant`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T11:44:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "52a46449ebc5d744b41610bf5df9d495cbb5053f",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1737] Fix `-Wdeprecated-builtins`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T09:42:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e01ffd351249a82cf722c1ddd0c659d586970242",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1737] Fix `-Wreserved-macro-identifier`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T09:42:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8da7c09d014f471881dbecac392f4ba360eae2fd",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1737] Fix `-Wunused-but-set-variable`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-28T09:42:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "70b031d9cc2042c4b16d31c197ab8d2daa9794e1",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1737] Consistent `constexpr` variable naming",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-17T22:06:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a5c4a774596690d2638f2c78115a8749b39d8004",
          "body": "* Printing a char with e.g. value 8, which represents\n  ASCII \"Backspace\", could munge previous characters.",
          "is_bot": false,
          "headline": "[TAK-1685] Data::Read: Don't print raw LocalContextFlags (==`uint8_t`)",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-09-17T22:06:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1a66401ea3e50b9d6af0e92f11ca8ce2997176df",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1736] Add \"overloaded\" helper utility for std::visit",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-09-07T12:24:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "09908d5f1baf811fda61332d5fb905e76d540537",
          "body": "* The message adds no real value and is less idiomatic\n  than a plain ISO C++ `assert(...)`.",
          "is_bot": false,
          "headline": "[TAK-1729] `BOOST_ASSERT_MSG(...)` -> `assert(...)`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-08-24T12:31:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "42adf91f5d93bb656ed09f5823d7a96834ffdd74",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5830] Version 2.1.0",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-07-26T15:32:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "69aaa0d871dec55c577c4525a7d9a32d2216e2f8",
          "body": "…w_error.",
          "is_bot": false,
          "headline": "[TAK-1697] Robin-Hood version update to eliminate robin_hood::overflo…",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-07-21T21:09:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "75661c752597e7de8594a22c7b00377c46266fee",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1686] Added general contains helper function",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-07-13T14:29:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "44ee4a101fd1c9acc9e8167df076cf4c4ada4666",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5804] mask `std::is_constant_evaluated()` in C++17",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-07-12T11:25:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7824d9642b64e913cbb0d21f3848ef3ea6a314e5",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5804] constexpr-friendly `CigarOperation` constructor",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-07-12T08:19:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f6d96f64b71edb660f3feb3d63619460a441bd2e",
          "body": "…bute.",
          "is_bot": false,
          "headline": "[TAG-5764] Feature: support 64-bit integers in PacBio::Reports::Attri…",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-06-07T17:36:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "580e7708edb5090cd1979add57e80925c8e2adad",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5672] Install CUDA `AsciiConversion.h` header",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-05-10T14:51:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1b43c46eead7323152ec8a034ce8941b222711c4",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5672] CUDA decorators",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-05-10T14:05:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "911a5f3f28649c587231983ebd07f60e3543f7c3",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5672] CUDA ASCII ⇆ 2-bit routines",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-05-10T14:05:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c6d0e0eb9cb6a9baf6330facd62836966aa4007",
          "body": "… compatibility.",
          "is_bot": false,
          "headline": "[TAG-5670] Platform-Independent pbcopper: Update simde version for M1…",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-04-29T21:08:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6fb2cf748ae7ead2470d3d09d88272037ebfc6f5",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] Allow `Data::ClampSNR` in CUDA",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-20T12:08:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1ce987054eaef6783c5176971a820d06077ad6a5",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] Add `PacBio::Cuda` for GPU allocators/deleters",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-17T19:41:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "73b9e0d5fbbf88facf4fa747e421dee11fe8af55",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] Add `Container::CapacityPointer`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-17T19:41:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0c9454c35637c037a1c003e8b0604344b96ba71",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] CUDA decorators for `PacBio::Container`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-12T09:21:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9ca2d81de52ed0795b221896f722c98a7874a732",
          "body": "…everseComplement()`",
          "is_bot": false,
          "headline": "[TAG-5488] `DNA2bitStringImpl::ReverseComp()` → `DNA2bitStringImpl::R…",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-12T09:21:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "570969b1780397694d1481b11a55e81353c8d44f",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] Add `Container::DNA2bitStringImpl::Length()`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-12T09:21:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ef66a1b5735bf924d3004f2bd4a8cfec765d3b51",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5488] Add `Container::BitContainer::Range()`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-12T09:21:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cb7a6b712df32554c7e6b2c541ddf3dcd6fc4a4a",
          "body": null,
          "is_bot": false,
          "headline": "[TAK-1666] De-inline ConsumesQuery/ConsumesReference",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-08T18:26:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0cb38dcc4882e3cf385874056ce8b554bb8e2fb1",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5581] Prefer `__CUDACC__` over `__NVCC__`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-04-05T09:34:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2093c7c9ec92574cba69a1cf35c4bebb87127261",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5595] Update CHANGELOG with rigtorp queues",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-03-31T15:10:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cd6d32d868677d6d0ed6e168271ab315de44d873",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5595] Fixed size queues",
          "author_name": "Armin Töpfer",
          "author_login": "armintoepfer",
          "committed_at": "2022-03-31T10:52:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f08a0fbb655bbd22711186fa0fb7c05378478383",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5581] Data::Cigar: inherit std::vector constructor",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-29T19:35:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "59a5eb7faf3008cefed21c6d156770cd0719d0ad",
          "body": "… builds",
          "is_bot": false,
          "headline": "[TAG-5579] Add cssw as public third-party to use in minorseq - static…",
          "author_name": "Darien Pardinas Diaz",
          "author_login": null,
          "committed_at": "2022-03-29T12:51:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "721ce760cc96021ec23d6d2d0d2c9a654d822cc7",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5572] Make KmerIndex key type uint32_t, not uint",
          "author_name": "Derek Barnett",
          "author_login": "derekwbarnett",
          "committed_at": "2022-03-24T21:33:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5f210035d080ea4b766521db85d1a3eb5ec8675d",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5572] Add LSHIndex, KMerIndex",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-03-24T16:24:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "109b81d3956b0ed79a49d473478fb0ad09889934",
          "body": "Merge in SAT/pbcopper from feature/TAG-5515-BitContainer-CUDA-decorators to develop\n\n* commit 'daa096fefa3909bf7f7acad928d9b290e6590389':\n  [TAG-5515] Add more CUDA decorators to bit containers\n  [TAG-5515] Add `Container::BitContainer::PushBack`",
          "is_bot": false,
          "headline": "Pull request #379: Feature/TAG-5515 BitContainer CUDA decorators",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-22T21:25:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "daa096fefa3909bf7f7acad928d9b290e6590389",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5515] Add more CUDA decorators to bit containers",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-22T21:17:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f6a66d2f78ac642d9373327bbc99db4c473db046",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5515] Add `Container::BitContainer::PushBack`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-22T21:17:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "505c526a1d00c5eb398590d5dd7897f743c56c47",
          "body": "…which is thread-safe\n\nMerge in SAT/pbcopper from bugfix/TAG-5579-use-lgamma-boost-thread-safe to develop\n\n* commit 'df7da637c72e1ea3bb0a27d058a8ca9389a34ca2':\n  [TAG-5579] Replace cmath lgamma with boost lgamma which is thread-safe",
          "is_bot": false,
          "headline": "Pull request #378: [TAG-5579] Replace cmath lgamma with boost lgamma …",
          "author_name": "Darien Diaz",
          "author_login": null,
          "committed_at": "2022-03-22T16:23:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "df7da637c72e1ea3bb0a27d058a8ca9389a34ca2",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5579] Replace cmath lgamma with boost lgamma which is thread-safe",
          "author_name": "Darien Pardinas Diaz",
          "author_login": null,
          "committed_at": "2022-03-22T16:20:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "01c8bb27cb62e50af7e5c1ff64f51d98a61eff69",
          "body": "Merge in SAT/pbcopper from feature/TAG-5552-silence-nvcc-warnings to develop\n\n* commit '7c6003c2c27e724ccb4b528fc7c257e68abb5867':\n  [TAG-5552] Switch to `std::conditional_t`",
          "is_bot": false,
          "headline": "Pull request #376: [TAG-5552] Switch to `std::conditional_t`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-18T22:10:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7c6003c2c27e724ccb4b528fc7c257e68abb5867",
          "body": "* `nvcc` doesn't like `BitsToType()` even though it\n  was only ever used in an unevaluated context.",
          "is_bot": false,
          "headline": "[TAG-5552] Switch to `std::conditional_t`",
          "author_name": "David Seifert",
          "author_login": "pb-dseifert",
          "committed_at": "2022-03-18T22:10:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4c030935b230f2ce5e474b08e30f83a231517ac0",
          "body": "Merge in SAT/pbcopper from TAG-5571-container-update to develop\n\n* commit '592d13f4dd94df2db4db5f05b8b82f0b051c8097':\n  [TAG-5571] Update RH and add Unordered/RHUnordered",
          "is_bot": false,
          "headline": "Pull request #375: [TAG-5571] Update RH and add Unordered/RHUnordered",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-03-18T21:07:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "592d13f4dd94df2db4db5f05b8b82f0b051c8097",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5571] Update RH and add Unordered/RHUnordered",
          "author_name": "Daniel Baker",
          "author_login": "PB-DB",
          "committed_at": "2022-03-18T21:01:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "75902044aa117270b92bca797cb006119cc2f049",
          "body": "Merge in SAT/pbcopper from feature/TAG-5549-add-cigar-utils to develop\n\n* commit '75181527d6b9944326ea3d1d74344ccabe96678d':\n  [TAG-5549] Add ValidateCigar and LeftAlignCigar",
          "is_bot": false,
          "headline": "Pull request #374: [TAG-5549] Add ValidateCigar and LeftAlignCigar",
          "author_name": "Robert Vaser",
          "author_login": null,
          "committed_at": "2022-03-18T16:07:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "75181527d6b9944326ea3d1d74344ccabe96678d",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5549] Add ValidateCigar and LeftAlignCigar",
          "author_name": "Robert Vaser",
          "author_login": null,
          "committed_at": "2022-03-18T15:45:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ac3305e40580014e33fa6bcc8b0108002a5a6ce2",
          "body": "Merge in SAT/pbcopper from bugfix/TAG-5552-unity to develop\n\n* commit 'b6254778efc144f4104fe17d3f911b241b5f6bdb':\n  [TAG-5552] Assorted clang-tidy fixes\n  [TAG-5552] Fixes for unity builds",
          "is_bot": false,
          "headline": "Pull request #373: [TAG-5552] Fixes for unity builds",
          "author_name": "Darien Diaz",
          "author_login": null,
          "committed_at": "2022-03-10T23:08:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6254778efc144f4104fe17d3f911b241b5f6bdb",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5552] Assorted clang-tidy fixes",
          "author_name": "Darien Pardinas Diaz",
          "author_login": null,
          "committed_at": "2022-03-10T22:19:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "802a0352e1bd76e961354dd39c271b7f6e94d528",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5552] Fixes for unity builds",
          "author_name": "Darien Pardinas Diaz",
          "author_login": null,
          "committed_at": "2022-03-10T21:42:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2d832619d5d934088c26b3cf7e4601bec6023991",
          "body": "Merge in SAT/pbcopper from feature/TAG-5458-htslib-1.15-update to develop\n\n* commit '359711d1cade58cb432673ecd6f0b9ba36cd6f29':\n  [TAG-5458] updating meson wraps to the latest versions",
          "is_bot": false,
          "headline": "Pull request #370: Update htslib wrap to version 1.15",
          "author_name": "Darien Diaz",
          "author_login": null,
          "committed_at": "2022-03-02T17:24:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "359711d1cade58cb432673ecd6f0b9ba36cd6f29",
          "body": null,
          "is_bot": false,
          "headline": "[TAG-5458] updating meson wraps to the latest versions",
          "author_name": "Darien Pardinas Diaz",
          "author_login": null,
          "committed_at": "2022-03-02T15:32:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "87b15cdd087b236c439506fa05d4d7f2b1437bad",
          "body": "Merge in SAT/pbcopper from feature/TAG-5374-update-clang-format to develop\n\n* commit 'f685f411ad14d6aeafdf64bb089277c96025b766':\n  [TAG-5374] update clang formatting",
          "is_bot": false,
          "headline": "Pull request #369: [TAG-5374] update clang formatting",
          "author_name": "Darien Diaz",
          "author_login": null,
          "committed_at": "2022-03-01T16:16:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 6,
      "commits_last_year": 0,
      "latest_release_at": "2022-02-25T09:32:21Z",
      "latest_release_tag": "v2.0.0",
      "releases_from_tags": false,
      "days_since_last_push": 1073,
      "active_weeks_last_year": 0,
      "days_since_latest_release": 1612,
      "mean_days_between_releases": 271.8
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 37,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": []
    },
    "popularity": {
      "forks": 5,
      "stars": 5,
      "watchers": 6,
      "fork_history": {
        "days": [
          {
            "date": "2020-06-20",
            "count": 1
          },
          {
            "date": "2020-12-28",
            "count": 3
          },
          {
            "date": "2021-04-28",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 5,
        "total_forks": 5
      },
      "star_history": null,
      "open_issues_and_prs": 1
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": 907858,
      "source_files_sampled": 693,
      "oversized_source_files": 18,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [],
      "advisories": {
        "error": null,
        "scope": null,
        "source": null,
        "findings": [],
        "collected": false,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 0,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [],
      "dependencies": [],
      "all_dependencies": {
        "error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
        "source": null,
        "packages": [],
        "collected": false,
        "truncated": false,
        "total_count": null,
        "direct_count": null,
        "indirect_count": null
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 1,
        "merged_prs": 6,
        "open_issues": 0,
        "closed_ratio": null,
        "closed_issues": 0,
        "closed_unmerged_prs": 4
      },
      "bus_factor": 2,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "pb-dseifert",
          "commits": 340,
          "avatar_url": "https://avatars.githubusercontent.com/u/39679069?v=4"
        },
        {
          "type": "User",
          "login": "derekwbarnett",
          "commits": 339,
          "avatar_url": "https://avatars.githubusercontent.com/u/41483752?v=4"
        },
        {
          "type": "User",
          "login": "armintoepfer",
          "commits": 113,
          "avatar_url": "https://avatars.githubusercontent.com/u/1433286?v=4"
        },
        {
          "type": "User",
          "login": "pezmaster31",
          "commits": 51,
          "avatar_url": "https://avatars.githubusercontent.com/u/282978?v=4"
        },
        {
          "type": "User",
          "login": "PB-DB",
          "commits": 6,
          "avatar_url": "https://avatars.githubusercontent.com/u/104648079?v=4"
        },
        {
          "type": "User",
          "login": "nlhepler",
          "commits": 5,
          "avatar_url": "https://avatars.githubusercontent.com/u/38372?v=4"
        },
        {
          "type": "User",
          "login": "dalexander",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/378620?v=4"
        },
        {
          "type": "User",
          "login": "ylipacbio",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/3189673?v=4"
        },
        {
          "type": "User",
          "login": "natechols",
          "commits": 3,
          "avatar_url": "https://avatars.githubusercontent.com/u/4529952?v=4"
        }
      ],
      "contributors_sampled": 9,
      "top_contributor_share": 0.394
    },
    "quality_signals": {
      "has_ci": false,
      "has_tests": true,
      "ci_workflows": [],
      "has_docs_dir": true,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 8,
            "reason": "binaries present in source code",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 0,
            "reason": "branch protection not enabled on development/release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": null,
            "reason": "no pull request found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/30 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 4 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": null,
            "reason": "no workflows found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 0,
            "reason": "project is archived",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": null,
            "reason": "no dependencies found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "no SAST tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": null,
            "reason": "No tokens found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "a9b1ffab97c37fd03264382627081a0ada4d0b84",
        "ran_at": "2026-07-26T22:11:18Z",
        "aggregate_score": 2.7,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": null,
      "oldest_open_prs": [
        {
          "number": 12,
          "created_at": "2020-12-31T15:11:40Z",
          "last_comment_at": "2023-08-09T13:29:58Z",
          "last_comment_author": "armintoepfer"
        }
      ],
      "last_merged_pr_at": "2016-08-18T13:52:14Z",
      "ci_last_conclusion": null,
      "oldest_open_issues": []
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/PacificBiosciences/pbcopper",
    "host": "github.com",
    "name": "pbcopper",
    "owner": "PacificBiosciences"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "critical",
      "name": "Overall health",
      "note": "Abandonment Policy applies a 40% multiplier to weighted overall health and gives it a ceiling of 29.",
      "notes": [
        {
          "code": "abandonment_overall_adjustment",
          "params": {
            "cap": 29,
            "pct": 40
          }
        }
      ],
      "value": 15,
      "inputs": {
        "security": 27,
        "vitality": 18,
        "community": 33,
        "governance": 59,
        "engineering": 44,
        "abandonment_cap": 29,
        "abandonment_state": "declared",
        "abandonment_multiplier": 40,
        "weighted_overall_before_abandonment": 37,
        "overall_after_abandonment_multiplier": 15
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "critical",
        "name": "Vitality",
        "value": 18,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "critical",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 1,
            "inputs": {
              "commits_last_year": 0,
              "human_commit_share": 1,
              "days_since_last_push": 1073,
              "active_weeks_last_year": 0
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 1073 days ago",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 1073
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "0/52 weeks with commits",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "0 commits in the last year",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "project is archived",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "at_risk",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 44,
            "inputs": {
              "releases_count": 6,
              "latest_release_tag": "v2.0.0",
              "releases_from_tags": false,
              "days_since_latest_release": 1612,
              "mean_days_between_releases": 271.8
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "6 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 1612 days ago",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 1612
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~271.8 days",
                "points": 12.6,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 271.8
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "at_risk",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "cap": 29,
              "state": "declared",
              "guards": [],
              "signals": [],
              "red_flag": true,
              "multiplier_pct": 40,
              "declared_reason": "archived",
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": null,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "the repository is archived on GitHub",
                "points": 40,
                "status": "partial",
                "details": [
                  {
                    "code": "abandonment_archived",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 33,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "critical",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 19,
            "inputs": {
              "forks": 5,
              "stars": 5,
              "watchers": 6,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "5 stars",
                "points": 9.8,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "5 forks",
                "points": 5,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "6 watchers",
                "points": 3.9,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 6
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "moderate",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 50,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (BSD-3-Clause-Clear)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "BSD-3-Clause-Clear"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 59,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "moderate",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 61,
            "inputs": {
              "bus_factor": 2,
              "contributors_sampled": 9,
              "top_contributor_share": 0.394
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "2 contributor(s) cover half of all commits",
                "points": 25.2,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 39% of commits",
                "points": 13.6,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 39
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "9 contributors",
                "points": 12.2,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 9
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 4 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "at_risk",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "issue_resolution"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 43,
            "inputs": {
              "merged_prs": 6,
              "open_issues": 0,
              "closed_issues": 0,
              "issue_closed_ratio": null,
              "closed_unmerged_prs": 4
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "no issues or no data",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_issues_or_data",
                    "params": {}
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "6/10 decided PRs merged",
                "points": 22.9,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 6,
                      "decided": 10
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 74,
            "inputs": {
              "followers": 495,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "PacificBiosciences",
              "public_repos": 113,
              "account_age_days": 5451
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "495 followers of PacificBiosciences",
                "points": 19.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 495,
                      "login": "PacificBiosciences"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "113 public repos, account ~14 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 113
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 14
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "at_risk",
        "name": "Engineering Quality",
        "value": 44,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "at_risk",
            "name": "Engineering practices",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_ci_tests"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 30,
            "inputs": {
              "has_ci": false,
              "has_tests": true,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "moderate",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "topics": [],
              "has_wiki": false,
              "homepage": null,
              "has_readme": true,
              "has_docs_dir": true,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "critical",
        "name": "Security",
        "value": 27,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "critical",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "ci_tests",
                    "dangerous_workflow",
                    "packaging",
                    "pinned_dependencies",
                    "signed_releases",
                    "token_permissions"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 27,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 12,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 6,
              "scorecard_aggregate": 2.7
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 4 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no workflows found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "project is archived",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "no SAST tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "No tokens found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 4
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "at_risk",
        "name": "AI Readiness",
        "value": 37,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 7,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.13,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "13 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 6.9,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 13,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "at_risk",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_pinned_dependencies"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 37,
            "inputs": {
              "has_nix": false,
              "has_tests": true,
              "lockfiles": [],
              "has_dockerfile": false,
              "typed_language": true,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": "C++ (statically typed)",
                "points": 11,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "C++"
                    }
                  }
                ],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "excellent",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 99,
            "inputs": {
              "primary_language": "C++",
              "largest_source_bytes": 907858,
              "source_files_sampled": 693,
              "oversized_source_files": 18
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "C++ (statically typed)",
                "points": 45,
                "status": "met",
                "details": [
                  {
                    "code": "statically_typed_language",
                    "params": {
                      "language": "C++"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "18/693 source files over 60KB",
                "points": 53.6,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 693,
                      "oversized": 18
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-26T22:11:26.965963Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/p/PacificBiosciences/pbcopper.svg",
  "full_name": "PacificBiosciences/pbcopper",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause-Clear"
}

Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics.