Public record
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-09-08 14:16 UTC

biowonks / pfql

Protein Feature Query Language

JavaScriptMIT★ 0 stars⑂ 0 forkssince Oct 2017View on GitHub ↗

biowonks/pfql holds a health index of 21 out of 100, placing it in the At Risk band. It scores highest on Sustainability & Governance (42/100) and lowest on AI Readiness (22/100). It was last updated 3089 days ago. A single contributor accounts for most of its recent work.

21
overall / 100
At Risk

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

21
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 31 is calibrated to 25 on the published index scale (record calibration 2026-08-02).

Ownership

BioWonksOrganization
1 follower15 public repossince Aug 2016

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publish
npmpfql1.2.13883089 days ago

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

25At Risk · 21% of overall
How it's scored
0/36Push recencylast push 3,089 days ago
0/36Commit cadence0/52 weeks with commits
0/18Commit volume0 commits in the last year
0/10OpenSSF Scorecard: Maintained0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
Inputs used
commits_last_year0
human_commit_share1
days_since_last_push3,089
active_weeks_last_year0
How it's scored
27/27Ships releases5 releases published
0/36Release recencylatest release 3,089 days ago
27/27Release cadencea release every ~39.8 days
0/10OpenSSF Scorecard: Signed-Releasesno data
Inputs used
releases_count5
latest_release_tag1.2.1
releases_from_tagsno
days_since_latest_release3,089
mean_days_between_releases39.8
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

24At Risk · 17% of overall
How it's scored
0/60Stars0 stars
0/25Forks0 forks
0/15Watchers1 watchers
Inputs used
forks0
stars0
watchers1
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
How it's scored
22.5/22.5README
22.5/22.5Licenserecognized license (MIT)
0/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges2
has_contributingno
has_issue_templateno
has_code_of_conductno
readme_badge_servicescoveralls.io, travis-ci.org
has_pull_request_templateno
How it's scored
21.2/80Monthly downloads38 downloads/month across npm
0/20Registry dependentsnot reported by this ecosystem
Inputs used
packagespfql
dependents
ecosystemsnpm
total_downloads
monthly_downloads38
unverified_packages_excluded
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

42Weak · 23% of overall
How it's scored
9/54Bus factor1 contributor(s) cover half of all commits
0/22.5Commit distributiontop contributor authored 100% of commits
1.4/13.5Contributor breadth1 contributors
10/10OpenSSF Scorecard: Contributorsproject has 9 contributing companies or organizations
Inputs used
bus_factor1
contributors_sampled1
top_contributor_share1
How it's scored
0/42Issue resolution0% of issues closed
30/30PR acceptance3/3 decided PRs merged
0/13Newcomer PR acceptanceno first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-ReviewFound 0/12 approved changesets -- score normalized to 0
Inputs used
merged_prs3
open_issues4
closed_issues0
prs_merged_7d0
prs_decided_7d0
prs_merged_30d0
prs_decided_30d0
issue_closed_ratio0
closed_unmerged_prs0
first_time_authors_30d0
first_time_prs_merged_30d0
first_time_prs_decided_30d0
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.
How it's scored
30/30Ownership backingorganization-owned
0/20Verified domain
2.2/25Owner reach1 followers of biowonks
20.8/25Track record15 public repos, account ~10 yr old
Inputs used
followers1
owner_typeOrganization
is_verifiedno
owner_loginbiowonks
public_repos15
account_age_days3,685
How it's scored
25/25Published & resolvable1 package(s) on npm
4/35Publish recencylatest publish 3,089 days ago
20/20Version history8 published versions
20/20Not deprecatedactive, not deprecated or yanked
Inputs used
packagespfql
ecosystemsnpm
any_deprecatedno
min_days_since_publish3,089

Engineering Quality

Are baseline engineering and documentation practices in place?

30At Risk · 19% of overall
How it's scored
0/24CI workflows
0/24Tests present
16/16Linter config.eslintrc.js
0/9.6Pre-commit hooks
0/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests0 out of 3 merged PRs checked by a CI test -- score normalized to 0
Inputs used
has_cino
has_testsno
has_editorconfigno
has_linter_configyes
has_precommit_configno

Documentation

50Moderate
How it's scored
30/30README
0/25Documentation directory
0/15Documentation / homepage site
10/10Repository description
0/10Topics
10/10Wiki
Inputs used
topics
has_wikiyes
homepage
docs_site
has_readmeyes
has_docs_dirno
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

34At Risk · 16% of overall
How it's scored
7.5/7.5Binary-Artifactsno binaries found in the repo
0/7.5Branch-Protectionbranch protection not enabled on development/release branches
0/2.5CI-Tests0 out of 3 merged PRs checked by a CI test -- score normalized to 0
0/2.5CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0/7.5Code-ReviewFound 0/12 approved changesets -- score normalized to 0
2.5/2.5Contributorsproject has 9 contributing companies or organizations
0/10Dangerous-Workflowno data
0/7.5Dependency-Update-Toolno update tool detected
0/5Fuzzingproject is not fuzzed
2.5/2.5Licenselicense file detected
0/7.5Maintained0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
0/5Packagingno data
0/5Pinned-Dependenciesno data
0/5SASTSAST tool is not run on all commits -- score normalized to 0
0/5Security-Policysecurity policy file not detected
0/7.5Signed-Releasesno data
0/7.5Token-Permissionsno data
0/7.5Vulnerabilities94 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated13
scorecard_versionv5.5.0
checks_inconclusive5
scorecard_aggregate1.8
Excluded from scoring (no data or not applicable): Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.

Dependency advisories

100Exceptional
How it's scored
35/35Direct dependencies free of known advisoriesno direct dependency carries a known advisory
25/25Indirect dependencies free of known advisoriesno indirect dependency carries a known advisory
0/40No advisories left outstandingno advisory carries a publication date
Inputs used
sourceosv
advisories0
affected_packages0
assessed_packages21
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the npm:pfql@1.2.1 runtime dependency closure — what installing the published package pulls in — 21 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

22At Risk · 4% of overall
How it's scored
0/45Agent instructionsno CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
6.7/40Legible commit history3 of 24 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
llms_txt_url
legible_history_share0.125
agent_instruction_files
agent_instruction_max_bytes
How it's scored
0/18One-command bootstrap
0/22Automated tests
11/11Lint / format config.eslintrc.js
0/11Static type checking
10/10Reproducible environmentlockfile
0/10Demonstrated agent practiceno agent-authored commits among the last 24
0/8Automated maintenanceno automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependenciesno data
Inputs used
has_nixno
has_testsno
lockfilespackage-lock.json, yarn.lock
has_dockerfileno
typed_languageno
bootstrap_files
has_devcontainerno
has_linter_configyes
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.
How it's scored
0/45Type-checkable codeJavaScript without a type-check config
48.1/55Manageable file sizes1/8 source files over 60KB
Inputs used
primary_languageJavaScript
largest_source_bytes94,131
source_files_sampled8
oversized_source_files1

Key facts

0GitHub stars
1contributors
0commits, last 12 months
3,089days since last push
5releases
1bus factor
4open issues
npmpackage ecosystems

More detail

OpenSSF Scorecard 1.8 / 10
1.8aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-09-08 14:16 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
0CI-Tests0 out of 3 merged PRs checked by a CI test -- score normalized to 0
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/12 approved changesets -- score normalized to 0
10Contributorsproject has 9 contributing companies or organizations
n/aDangerous-Workflowno workflows found
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
0Maintained0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
n/aPackagingpackaging workflow not detected
n/aPinned-Dependenciesno dependencies found
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
n/aToken-PermissionsNo tokens found
0Vulnerabilities94 existing vulnerabilities detected
Direct dependencies 2
RegistryPackageVersion constraintManifest
npmbunyan^1.8.8package.json
npmlodash^4.17.5package.json
All dependencies 507

Full resolved dependency set from the GitHub dependency graph: 3 direct and 504 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
npmbunyan1.8.12direct
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npmlodash4.17.5direct
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npmarray-uniq1.0.3indirect
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npmarray-unique0.3.2indirect
npmarrify1.0.1indirect
npmasn10.2.3indirect
npmassert-plus0.2.0indirect
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npmatob2.0.3indirect
npmaws-sign20.6.0indirect
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npmaws41.6.0indirect
npmbabel-code-frame6.26.0indirect
npmbabel-generator6.26.1indirect
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npmbabel-runtime6.26.0indirect
npmbabel-template6.26.0indirect
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npmbabel-types6.26.0indirect
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npmms2.0.0indirect
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npmmv2.1.1indirect
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npmncp2.0.0indirect
npmnopt3.0.6indirect
npmnormalize-package-data2.4.0indirect
npmnormalize-path2.1.1indirect
npmnpm-run-path2.0.2indirect
npmnumber-is-nan1.0.1indirect
npmnyc11.6.0indirect
npmoauth-sign0.8.2indirect
npmobject-assign4.1.1indirect
npmobject-copy0.1.0indirect
npmobject-visit1.0.1indirect
npmobject.omit2.0.1indirect
npmobject.pick1.3.0indirect
npmonce1.4.0indirect
npmonetime1.1.0indirect
npmoptimist0.6.1indirect
npmoptionator0.8.2indirect
npmos-homedir1.0.2indirect
npmos-locale2.1.0indirect
npmp-finally1.0.0indirect
npmp-limit1.2.0indirect
npmp-locate2.0.0indirect
npmp-try1.0.0indirect
npmparse-glob3.0.4indirect
npmparse-json2.2.0indirect
npmpascalcase0.1.1indirect
npmpath-exists2.1.0indirect
npmpath-exists3.0.0indirect
npmpath-is-absolute1.0.1indirect
npmpath-is-inside1.0.2indirect
npmpath-key2.0.1indirect
npmpath-parse1.0.5indirect
npmpath-type1.1.0indirect
npmperformance-now2.1.0indirect
npmpify2.3.0indirect
npmpinkie2.0.4indirect
npmpinkie-promise2.0.1indirect
npmpkg-dir1.0.0indirect
npmpluralize1.2.1indirect
npmposix-character-classes0.1.1indirect
npmprelude-ls1.1.2indirect
npmpreserve0.2.0indirect
npmprocess-nextick-args1.0.7indirect
npmprogress1.1.8indirect
npmpseudomap1.0.2indirect
npmpump1.0.2indirect
npmpumpify1.3.5indirect
npmpunycode1.4.1indirect
npmqs6.3.2indirect
npmqs6.5.1indirect
npmrandomatic1.1.7indirect
npmread-pkg1.1.0indirect
npmread-pkg-up1.0.1indirect
npmreadable-stream2.3.3indirect
npmreadline21.0.1indirect
npmrechoir0.6.2indirect
npmregenerator-runtime0.11.1indirect
npmregex-cache0.4.4indirect
npmregex-not1.0.2indirect
npmremove-trailing-separator1.1.0indirect
npmrepeat-element1.1.2indirect
npmrepeat-string1.6.1indirect
npmrepeating2.0.1indirect
npmrequest2.79.0indirect
npmrequest2.83.0indirect
npmrequire-directory2.1.1indirect
npmrequire-main-filename1.0.1indirect
npmrequire-uncached1.0.3indirect
npmresolve1.1.7indirect
npmresolve1.4.0indirect
npmresolve-from1.0.1indirect
npmresolve-from2.0.0indirect
npmresolve-url0.2.1indirect
npmrestore-cursor1.0.1indirect
npmret0.1.15indirect
npmright-align0.1.3indirect
npmrimraf2.4.5indirect
npmrimraf2.6.2indirect
npmrun-async0.1.0indirect
npmrx-lite3.1.2indirect
npmsafe-buffer5.1.1indirect
npmsafe-json-stringify1.0.4indirect
npmsafe-regex1.1.0indirect
npmsamsam1.1.2indirect
npmsemver5.5.0indirect
npmset-blocking2.0.0indirect
npmset-value0.4.3indirect
npmset-value2.0.0indirect
npmshebang-command1.2.0indirect
npmshebang-regex1.0.0indirect
npmshelljs0.7.8indirect
npmsignal-exit3.0.2indirect
npmsinon1.17.7indirect
npmslice-ansi0.0.4indirect
npmslide1.1.6indirect
npmsnapdragon0.8.2indirect
npmsnapdragon-node2.1.1indirect
npmsnapdragon-util3.0.1indirect
npmsntp1.0.9indirect
npmsntp2.0.2indirect
npmsource-map0.2.0indirect
npmsource-map0.4.4indirect
npmsource-map0.5.7indirect
npmsource-map0.6.1indirect
npmsource-map-resolve0.5.1indirect
npmsource-map-url0.4.0indirect
npmspawn-wrap1.4.2indirect
npmspdx-correct3.0.0indirect
npmspdx-exceptions2.1.0indirect
npmspdx-expression-parse3.0.0indirect
npmspdx-license-ids3.0.0indirect
npmsplit-string3.1.0indirect
npmsprintf-js1.0.3indirect
npmsshpk1.13.1indirect
npmstatic-extend0.1.2indirect
npmstream-shift1.0.0indirect
npmstring-width1.0.2indirect
npmstring-width2.1.1indirect
npmstring_decoder1.0.3indirect
npmstringstream0.0.5indirect
npmstrip-ansi3.0.1indirect
npmstrip-ansi4.0.0indirect
npmstrip-bom2.0.0indirect
npmstrip-bom3.0.0indirect
npmstrip-eof1.0.0indirect
npmstrip-json-comments2.0.1indirect
npmsupports-color2.0.0indirect
npmsupports-color3.1.2indirect
npmsupports-color3.2.3indirect
npmtable3.8.3indirect
npmtest-exclude4.2.1indirect
npmtext-table0.2.0indirect
npmthrough2.3.8indirect
npmthrough22.0.3indirect
npmto-fast-properties1.0.3indirect
npmto-object-path0.3.0indirect
npmto-regex3.0.2indirect
npmto-regex-range2.1.1indirect
npmtough-cookie2.3.3indirect
npmtrim-right1.0.1indirect
npmtryit1.0.3indirect
npmtunnel-agent0.4.3indirect
npmtunnel-agent0.6.0indirect
npmtweetnacl0.14.5indirect
npmtype-check0.3.2indirect
npmtype-detect0.1.1indirect
npmtype-detect1.0.0indirect
npmtypedarray0.0.6indirect
npmuglify-js2.8.29indirect
npmuglify-to-browserify1.0.2indirect
npmunion-value1.0.0indirect
npmunset-value1.0.0indirect
npmurix0.1.0indirect
npmuse3.1.0indirect
npmuser-home2.0.0indirect
npmutil0.10.3indirect
npmutil-deprecate1.0.2indirect
npmuuid3.1.0indirect
npmvalidate-npm-package-license3.0.3indirect
npmverror1.10.0indirect
npmwhich1.3.0indirect
npmwhich-module2.0.0indirect
npmwindow-size0.1.0indirect
npmwordwrap0.0.2indirect
npmwordwrap0.0.3indirect
npmwordwrap1.0.0indirect
npmwrap-ansi2.1.0indirect
npmwrappy1.0.2indirect
npmwrite0.2.1indirect
npmwrite-file-atomic1.3.4indirect
npmxtend4.0.1indirect
npmy18n3.2.1indirect
npmyallist2.1.2indirect
npmyargs11.1.0indirect
npmyargs3.10.0indirect
npmyargs-parser8.1.0indirect
npmyargs-parser9.0.2indirect
Dependency advisories 0

Installing npm:pfql@1.2.1 pulls in 21 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.

No known advisories affect the assessed dependencies.

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable

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Spotted something off in this report, or have thoughts to share? Wrong measurements, missed tooling, ideas, questions — anything is welcome. Every message is read and gets a response.

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.34.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statisticsnpm.