Public recordModerate
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-26 09:05 UTC
griffithlab / civicpy
A python interface for the CIViC db application
griffithlab/civicpy holds a health index of 64 out of 100, placing it in the Moderate band. It scores highest on Vitality (75/100) and lowest on Community & Adoption (39/100). It was last updated 8 days ago. 2 contributors account for most of its recent work.
64
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
64
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
The Griffith LabOrganization
179 followers86 public repossince Jul 2014
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish |
|---|---|---|---|---|---|
| PyPI | civicpypoints to another repo — not scored | 5.4.0 | 1,668 | 30 | 93 days ago |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
75
Development activity
70Good
How it's scored
| 28.8/36 | Push recency — last push 8 days ago |
| 13.2/36 | Commit cadence — 19/52 weeks with commits |
| 17.6/18 | Commit volume — 89 commits in the last year |
| 10/10 | OpenSSF Scorecard: Maintained — 13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10 |
Inputs used
| commits_last_year | 89 |
| human_commit_share | 1 |
| days_since_last_push | 8 |
| active_weeks_last_year | 19 |
Release discipline
82Good
How it's scored
| 27/27 | Ships releases — 18 releases published |
| 27/36 | Release recency — latest release 93 days ago |
| 19.8/27 | Release cadence — a release every ~62.5 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 18 |
| latest_release_tag | v5.4.0 |
| releases_from_tags | no |
| days_since_latest_release | 93 |
| mean_days_between_releases | 62.5 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
39
Popularity & adoption
30At risk
How it's scored
| 17.5/60 | Stars — 13 stars |
| 7/25 | Forks — 8 forks |
| 5/15 | Watchers — 9 watchers |
Inputs used
| forks | 8 |
| stars | 13 |
| watchers | 9 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
50Moderate
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (MIT) |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
68
Maintainer resilience (bus factor)
60Moderate
How it's scored
| 25.2/54 | Bus factor — 2 contributor(s) cover half of all commits |
| 12.1/22.5 | Commit distribution — top contributor authored 46% of commits |
| 12.2/13.5 | Contributor breadth — 9 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 13 contributing companies or organizations |
Inputs used
| bus_factor | 2 |
| contributors_sampled | 9 |
| top_contributor_share | 0.461 |
How it's scored
| 33.7/46.8 | Issue resolution — 72% of issues closed |
| 31.7/38.3 | PR acceptance — 117/141 decided PRs merged |
| 9/15 | OpenSSF Scorecard: Code-Review — Found 10/16 approved changesets -- score normalized to 6 |
Inputs used
| merged_prs | 117 |
| open_issues | 28 |
| closed_issues | 72 |
| issue_closed_ratio | 0.72 |
| closed_unmerged_prs | 24 |
Ownership & stewardship
71Good
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 16.2/25 | Owner reach — 179 followers of griffithlab |
| 25/25 | Track record — 86 public repos, account ~11 yr old |
Inputs used
| followers | 179 |
| owner_type | Organization |
| is_verified | — |
| owner_login | griffithlab |
| public_repos | 86 |
| account_age_days | 4,377 |
Engineering Quality
Are baseline engineering and documentation practices in place?
72
Engineering practices
64Moderate
How it's scored
| 24/24 | CI workflows — 2 workflow(s) |
| 24/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 16/20 | OpenSSF Scorecard: CI-Tests — 13 out of 15 merged PRs checked by a CI test -- score normalized to 8 |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Documentation
85Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 10/10 | Repository description |
| 10/10 | Topics — 1 topics |
| 10/10 | Wiki |
Inputs used
| topics | civic |
| has_wiki | yes |
| homepage | — |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
63
Security posture
54Moderate
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — no data |
| 2/2.5 | CI-Tests — 13 out of 15 merged PRs checked by a CI test -- score normalized to 8 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 4.5/7.5 | Code-Review — Found 10/16 approved changesets -- score normalized to 6 |
| 2.5/2.5 | Contributors — project has 13 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 7.5/7.5 | Maintained — 13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 5.4 |
Excluded from scoring (no data or not applicable): branch_protection, signed_releases. Remaining weights renormalized.
Dependency advisories
100Excellent
How it's scored
| 35/35 | Direct dependencies free of known advisories — no direct dependency carries a known advisory |
| 25/25 | Indirect dependencies free of known advisories — no indirect dependency carries a known advisory |
| 0/40 | No advisories left outstanding — no advisory carries a publication date |
Inputs used
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 29 |
| unassessed_packages | 0 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:civicpy@5.4.0 runtime dependency closure — what installing the published package pulls in — 29 packages. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
41
Agent context & guidance
24Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 24/40 | Legible commit history — 45 of 100 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| legible_history_share | 0.45 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Verify loop (build / test / typecheck)
50Moderate
How it's scored
| 18/18 | One-command bootstrap — docs/Makefile |
| 22/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 10/10 | Reproducible environment — Dockerfile |
| 0/10 | Demonstrated agent practice — no agent-authored commits among the last 100 |
| 0/8 | Automated maintenance — no automated dependency updates observed |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | yes |
| typed_language | no |
| bootstrap_files | docs/Makefile |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Code legibility for models
52Moderate
How it's scored
| 0/45 | Type-checkable code — Python without a type-check config |
| 51.8/55 | Manageable file sizes — 1/17 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 135,976 |
| source_files_sampled | 17 |
| oversized_source_files | 1 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples, notebooks |
Inputs used
| example_dirs | examples, notebooks |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
13GitHub stars
9contributors
89commits, last 12 months
8days since last push
18releases
2bus factor
28open issues
PyPIpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- pypi package 'civicpy' points at a different repository (http://civicpy.org); excluded from ecosystem scoring
More detail
Star and fork history 0 ★ / 8 ⇿
0Stars
8Forks
14Releases
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Major 5Minor 4Patch 4
Each point covers 7 days.
OpenSSF Scorecard 5.4 / 10
5.4aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| n/a | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 8 | CI-Tests | 13 out of 15 merged PRs checked by a CI test -- score normalized to 8 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 6 | Code-Review | Found 10/16 approved changesets -- score normalized to 6 |
| 10 | Contributors | project has 13 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
All dependencies 21
Full resolved dependency set from the GitHub dependency graph: 0 direct and 21 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | attrs | 22.1.0 | indirect |
| PyPI | click | — | indirect |
| PyPI | coverage | — | indirect |
| PyPI | coveralls | — | indirect |
| PyPI | deepdiff | — | indirect |
| PyPI | deprecation | — | indirect |
| PyPI | ga4gh-cat-vrs | — | indirect |
| PyPI | ga4gh-va-spec | — | indirect |
| PyPI | ga4gh-vrs | — | indirect |
| PyPI | networkx | — | indirect |
| PyPI | obonet | — | indirect |
| PyPI | pandas | — | indirect |
| PyPI | pysam | — | indirect |
| PyPI | pytest | 6.2.5 | indirect |
| PyPI | pytest-cov | 5.0.0 | indirect |
| PyPI | python-dateutil | — | indirect |
| PyPI | requests | — | indirect |
| PyPI | sphinx | — | indirect |
| PyPI | sphinxcontrib-programoutput | — | indirect |
| PyPI | sphinxjp-themes-basicstrap | — | indirect |
| PyPI | vcfpy | — | indirect |
Dependency advisories 0
Installing pypi:civicpy@5.4.0 pulls in 29 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.
No known advisories affect the assessed dependencies.
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [
"civic"
],
"is_fork": false,
"size_kb": 178272,
"has_wiki": true,
"homepage": null,
"languages": {
"Python": 334471,
"Dockerfile": 166
},
"pushed_at": "2026-07-17T17:53:19Z",
"created_at": "2018-04-25T20:40:02Z",
"owner_type": "Organization",
"updated_at": "2026-07-17T13:56:58Z",
"description": "A python interface for the CIViC db application",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "master",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "https://griffithlab.org",
"name": "The Griffith Lab",
"type": "Organization",
"login": "griffithlab",
"company": null,
"location": "United States of America",
"followers": 179,
"avatar_url": "https://avatars.githubusercontent.com/u/8323084?v=4",
"created_at": "2014-07-31T18:50:55Z",
"is_verified": null,
"public_repos": 86,
"account_age_days": 4377
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v5.4.0",
"kind": "minor",
"published_at": "2026-04-23T19:50:58Z"
},
{
"tag": "v5.3.0",
"kind": "minor",
"published_at": "2026-03-31T19:50:04Z"
},
{
"tag": "v5.2.0",
"kind": "minor",
"published_at": "2026-02-19T16:15:32Z"
},
{
"tag": "5.1.1",
"kind": "patch",
"published_at": "2026-01-05T18:54:15Z"
},
{
"tag": "5.1.0",
"kind": "minor",
"published_at": "2025-11-19T18:43:32Z"
},
{
"tag": "5.0.0",
"kind": "major",
"published_at": "2025-06-03T17:18:40Z"
},
{
"tag": "4.1.0",
"kind": "minor",
"published_at": "2025-03-28T14:04:59Z"
},
{
"tag": "4.0.0",
"kind": "major",
"published_at": "2024-12-10T18:25:28Z"
},
{
"tag": "3.1.2",
"kind": "patch",
"published_at": "2024-10-08T14:47:25Z"
},
{
"tag": "3.1.1",
"kind": "patch",
"published_at": "2024-10-08T13:59:44Z"
},
{
"tag": "3.1.0",
"kind": "minor",
"published_at": "2024-04-19T15:18:13Z"
},
{
"tag": "3.0.0",
"kind": "major",
"published_at": "2023-01-09T22:25:06Z"
},
{
"tag": "2.0.0",
"kind": "major",
"published_at": "2022-10-13T16:48:51Z"
},
{
"tag": "v2.0.dev0",
"kind": "other",
"published_at": "2022-09-28T13:56:14Z"
},
{
"tag": "1.0.1",
"kind": "patch",
"published_at": "2020-05-14T18:26:31Z"
},
{
"tag": "1.0.0",
"kind": "major",
"published_at": "2020-03-14T03:28:51Z"
},
{
"tag": "v0.0.3",
"kind": "patch",
"published_at": "2019-04-02T01:41:05Z"
},
{
"tag": "v0.0.2",
"kind": "patch",
"published_at": "2018-07-23T14:55:54Z"
}
],
"recent_commits": [
{
"oid": "dcfc0f9fa8644e659b23a71e3435d3d76538b552",
"body": "close #219\n\n* This removes 'citations' extension from statements, and instead stores these in the `reportedIn` field\n* Use documents where possible, otherwise use IRIs",
"is_bot": false,
"headline": "fix!: remove temp citations ext, use reportedIn instead (#246)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-07-17T13:56:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e92e08fc5d1d8cd3affd7b6bb70610fc3ec2083b",
"body": "* This was removed in #223, but is needed for #217 (originally in #226)\n* Adds `--submission-type` option to create-gks-json",
"is_bot": false,
"headline": "feat: add back `create_gks_record_from_assertion` (#238)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-07-17T13:45:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ffe80efc747eb99188d0d146bb316ba9ef3636d3",
"body": "close #232",
"is_bot": false,
"headline": "feat!: store allele origin as mapping, not extension (#236)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-07-08T17:33:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e2fd1320001541eb04e167f9f5e6ba502e109922",
"body": "Needed for #217 (originally in #226, but separating to make PRs easier to review)\n\n* Also creates new `_CivicGksAssertionMixin` that will be used later",
"is_bot": false,
"headline": "feat!: Rename `CivicGksAssertion` -> `CivicGksClinGenAssertion` (#237)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-30T14:04:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "789e65b95f41a7d70c77c6db4b607ac9754f013b",
"body": "…242)\n\n* Also updates cache\n\nclose #241",
"is_bot": false,
"headline": "fix(test): update assertion check in test_bulk_que_search_variants (#…",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-30T13:45:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fa689494d4c4ff6342e1b9c9cb2ba11040237d4a",
"body": "close #229\n\n* ClinVar This will create an update submission if clinvar_accession extension is provided, otherwise it will create a novel submission",
"is_bot": false,
"headline": "feat: add clinvar_accession to gks assertions (#230)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-16T14:47:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c112a08abf59ccefde5caf78671f71a112d17ef7",
"body": "close #197",
"is_bot": false,
"headline": "feat: include mane transcript in GeneVariant + GKS expressions (#227)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-16T13:53:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08cd46c4bc78f3da78c061a2e1815397fb74173f",
"body": "close #192",
"is_bot": false,
"headline": "fix: CivicGksMolecularProfile should not include null rep coords (#228)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-16T11:38:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "377fb73d5ac60f1b4042062030bcd031073bf697",
"body": "close #201",
"is_bot": false,
"headline": "feat!: apply va-spec amp/asco/cap changes to gks exporter (#223)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-06-16T11:36:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "347728d3f8bd8c4e570c6946fa8b3a7d443a6957",
"body": "Use versioned cache pkl download path matching installed version",
"is_bot": false,
"headline": "Merge pull request #224 from griffithlab/versioned_releases",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-05-07T18:52:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "820d0128ff6bc1054d875027582a5baf2965a433",
"body": null,
"is_bot": false,
"headline": "test: use prod API to generate test cache (#225)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-05-07T15:03:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac47b4972b9fe713159ac0e069c37506b02e0509",
"body": "Co-authored-by: Kori Kuzma <korikuzma@gmail.com>",
"is_bot": false,
"headline": "Apply suggestions from code review",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-05-07T12:29:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "553096d14a05c362f1002aa6ed587a204a2d3f68",
"body": null,
"is_bot": false,
"headline": "Use versioned cache pkl download path matching installed version",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-05-06T17:23:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87b984da9617f9d34ddeb70cf20f3ec5b776bc95",
"body": null,
"is_bot": false,
"headline": "Upgrade to version 5.4.0",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:50:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9c9c37ded2561a90d592e7db5a75d272d0c5e847",
"body": "fix: swap `backports` for `dateutil.parser`",
"is_bot": false,
"headline": "Merge pull request #215 from emmcauley/em_fix_backports",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:44:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f875bd7b1e4a16e8ba4f017e2050f5d419ef5e8b",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into em_fix_backports",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:41:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08af85920c6c42883b20f911543ecbf21e74a426",
"body": "feat: get_organization_by_name() helper",
"is_bot": false,
"headline": "Merge pull request #214 from emmcauley/em_issue_196",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:39:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87a1324c126416a155108b6981481d07f05badf0",
"body": null,
"is_bot": false,
"headline": "Update test after org rename",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:37:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6963d3d5cbc40cbf88d99207dd5958cc32459b17",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into em_issue_196",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:36:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bb20353e56a5374f10cf811b16806a804c868843",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into em_issue_196",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:35:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0e386870d613705ccc21b1d04bf927fc0d4f4b9d",
"body": "feat: add reportedIn to hasEvidenceLines",
"is_bot": false,
"headline": "Merge pull request #218 from griffithlab/add-eids-links-to-aids",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-23T19:31:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aae4f1ad9759c674cd9d70f724ac07a2de5ab120",
"body": null,
"is_bot": false,
"headline": "add test for citations",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-04-22T16:34:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3b9e4ee465d8296b5b855b4c2f9110eb162f0967",
"body": null,
"is_bot": false,
"headline": "Merge branch 'master' into add-eids-links-to-aids",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-04-22T15:38:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "45051185a1414d490589fbdacd54ff4c6a7927c5",
"body": "Update testes to work with latest staging data dump",
"is_bot": false,
"headline": "Merge pull request #220 from griffithlab/test_update",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-22T13:08:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5c3ca0eef8a3825cf1f954c42f320b7a8257f47",
"body": null,
"is_bot": false,
"headline": "Update tests",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-22T12:25:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "51967fd55e9be69e524c8baa7ef30b324bb38781",
"body": null,
"is_bot": false,
"headline": "Update test cache",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-22T12:25:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a2746842e36d597a73edfc108e9d97662b8008a8",
"body": null,
"is_bot": false,
"headline": "revert to using extension",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-04-21T22:56:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3fbd3cefb0ee07b5bb4eb604fbd6cecea2255516",
"body": null,
"is_bot": false,
"headline": "update cache",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-04-21T19:22:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a71f185c7b45744b611d219eabba7db4a3a0b49b",
"body": "* This will allos us to retain all references to EIDs that are associated to an AID, even if they fail to translate to CivicGksEvidence",
"is_bot": false,
"headline": "feat: add reportedIn to hasEvidenceLines",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-04-21T19:18:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "57ca012917ba8a4af3ca8f743e3575779db76dd9",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into em_fix_backports",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-13T20:44:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac1d9f2ce100d01d901046f3722a3ff6eb8e5943",
"body": null,
"is_bot": false,
"headline": "Update tests",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-13T20:41:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e4e098669f4f489d460403da04385d5a47e2fd8b",
"body": null,
"is_bot": false,
"headline": "Update test cache pkl file",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-13T20:14:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e81ec362dc86ed099de867eb694c6b24d2075d5e",
"body": null,
"is_bot": false,
"headline": "Add some more install/update instructions",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-04-08T15:38:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bf41565e90b5860155635d90e1b9864b132fbe77",
"body": null,
"is_bot": false,
"headline": "fix: use isoparse",
"author_name": "Erin McAuley",
"author_login": "emmcauley",
"committed_at": "2026-04-01T20:02:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "56cec8b66a5dba2a732759a1e19f985af8e2856d",
"body": null,
"is_bot": false,
"headline": "chore: swap backports for python-dateutil",
"author_name": "Erin McAuley",
"author_login": "emmcauley",
"committed_at": "2026-04-01T20:01:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca9d24847962804d793808b878bf41e3711aa8ba",
"body": null,
"is_bot": false,
"headline": "feat: get_organization_by_name() helper",
"author_name": "Erin McAuley",
"author_login": "emmcauley",
"committed_at": "2026-04-01T17:00:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a091595c0c168bb47cee1c7dcbb6ed1c60647ef8",
"body": null,
"is_bot": false,
"headline": "Update to version 5.3.0",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-31T19:49:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aebe9be2f6b8873d14f9b7f4bc853cd5c97cff37",
"body": "Include ClinGen codes in VCFs",
"is_bot": false,
"headline": "Merge pull request #213 from griffithlab/clingen_codes",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-31T19:48:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cac4dab7898b99c2ba44fb8638a74acce9d4a306",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into clingen_codes",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-31T19:44:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "26c24b5f05e68ada541bad2b1724d493c04b5d1f",
"body": "Update complex fields to have explicit atttribute classes.",
"is_bot": false,
"headline": "Merge pull request #212 from griffithlab/complex_attributes",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-31T19:42:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "11f53bb1ba0f5b28078068c74bfe8186bc7455d4",
"body": null,
"is_bot": false,
"headline": "Update test cache pkl",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T18:31:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e98285797957320d6fdf12c6d65cfaed27ba03e5",
"body": null,
"is_bot": false,
"headline": "Include ClinGen codes in VCFs",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T18:23:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "afa055f42b7883b4ec8bac4ebe693a8cdf6532a0",
"body": null,
"is_bot": false,
"headline": "Update test cache pkl",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T15:54:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "95c7db44debb73ee4523cdd21aaffea88db9c259",
"body": null,
"is_bot": false,
"headline": "Fix reference build formatting in fusion coordinates",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T15:53:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "596d67e6ccf4016970adeeafbe9f6cca0b56c75f",
"body": null,
"is_bot": false,
"headline": "Add tests",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T15:53:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2fbca6d4cd82ff127504c607eb897ce35d881d95",
"body": null,
"is_bot": false,
"headline": "Classify complex attributes",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-03-30T14:08:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "31bb3a8d3e190394041d42c9b74730be425be077",
"body": null,
"is_bot": false,
"headline": "Upgrade to version 5.2.0",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-19T16:12:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3efb89ef8937485b728fd9a06810abecd374cff8",
"body": "* fix: do not include n/a clinvar ids in mappings\n\nclose #205\n\n---------\n\nCo-authored-by: Susanna Kiwala <susanna.kiwala@wustl.edu>",
"is_bot": false,
"headline": "fix: do not include n/a clinvar ids in mappings (#206)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2026-02-19T15:05:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b692cfee305fc36e54a571faa1bbc5bc3352f4b9",
"body": "fix: don't use root logger",
"is_bot": false,
"headline": "Merge pull request #208 from griffithlab/dont-use-root-logger",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-19T14:32:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "38b5784e52dc8839c31a0ef4fb866c69ed43350b",
"body": null,
"is_bot": false,
"headline": "Merge remote-tracking branch 'origin/master' into dont-use-root-logger",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-19T14:29:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da85ca4b453caa994aa98b648116eecf3eab0919",
"body": "Add support for regions",
"is_bot": false,
"headline": "Merge pull request #204 from griffithlab/regions",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-19T14:24:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3381a80c03d0928caa749883dadf62b6b147097",
"body": null,
"is_bot": false,
"headline": "Update test cache pkl",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-19T14:22:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3e1696ffe07567592dcbf6342ded72e9c4c629b9",
"body": null,
"is_bot": false,
"headline": "fix: don't use root logger",
"author_name": "James Stevenson",
"author_login": "jsstevenson",
"committed_at": "2026-02-19T02:32:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b79b8dfd9c2386986dab702cfd32aa2e93fc5320",
"body": "…th new API rate limits",
"is_bot": false,
"headline": "Add sleep and increase page_size in order to improve compatibility wi…",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-10T19:28:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "78a8ae5a1efef74f8180d10fef595947a1cacadb",
"body": "Co-authored-by: Adam Coffman <acc@fastmail.com>",
"is_bot": false,
"headline": "Update civicpy/civic.py",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-10T18:52:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fa8ee282f586604e1e44581260c39bb7bf8aa6a2",
"body": null,
"is_bot": false,
"headline": "Pin an older version of pandas",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-10T17:31:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "26e56b3319284becb4562e34b287c00098a6c812",
"body": null,
"is_bot": false,
"headline": "Add documentation for regions",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-10T16:01:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c7c6eee1c1745b0d83089ba4c2d56d2022afef5",
"body": null,
"is_bot": false,
"headline": "Add support for regions",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-10T15:42:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d50d98a499dacf1113a715790687db3a3722d0f",
"body": null,
"is_bot": false,
"headline": "Enable PDF creation for docs",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-02-06T20:59:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1fa606b7069817f38ee412c0d12cd2a11bef29b0",
"body": null,
"is_bot": false,
"headline": "Update test cache pkl",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-01-05T19:39:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "27b7d687701bff4ddd025468ec42d4637c2887de",
"body": null,
"is_bot": false,
"headline": "Update to version 5.1.1",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-01-05T18:53:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03910e6a737bd92c41e412d9ff59c75c2b1ecc7c",
"body": "feat: add isApprovedVcep to Organization + GKS Agent",
"is_bot": false,
"headline": "Merge pull request #203 from griffithlab/issue-202-add-vcep-to-org",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2026-01-05T18:50:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8a74f4c0937f1d7fa4a8614e5b3a125cac0185da",
"body": null,
"is_bot": false,
"headline": "update pkl",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-17T22:08:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ac97e40a4874c3b2e7279294e048d185825267b2",
"body": null,
"is_bot": false,
"headline": "fix: casing",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-16T14:19:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "17540da5d9892493253d4f88beb6aa185d2a78cd",
"body": null,
"is_bot": false,
"headline": "fix: casing",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-16T14:17:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e82458008886b7566f11a49e336ae549ee085a78",
"body": null,
"is_bot": false,
"headline": "fix: casing",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-16T14:16:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7de2ff09881919d919e0449db92addb171b9ab07",
"body": "Co-authored-by: Kori Kuzma <korikuzma@gmail.com>",
"is_bot": false,
"headline": "Apply suggestion from @korikuzma",
"author_name": "Katie Perry",
"author_login": "katie-perry",
"committed_at": "2025-12-16T14:08:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e71874d03db8d33cc57e4918ee8bdab9dd135e5b",
"body": null,
"is_bot": false,
"headline": "update pkl",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T21:06:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bdcb6d6c819d93f6ad5bfa5d94a2c4fc8647bca4",
"body": null,
"is_bot": false,
"headline": "fix: bool type",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T21:03:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b0ab2ea7054b06004183d95095018dd4357bf448",
"body": null,
"is_bot": false,
"headline": "snake case for extension names",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T20:05:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1a5ee37fb2b1295164dce28e8efc6baac503e432",
"body": null,
"is_bot": false,
"headline": "tests: add tests to check for new attribute on organization",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T19:56:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "927788d23096d7afd796e9016e1961e741e2e616",
"body": null,
"is_bot": false,
"headline": "accidentally committed typo",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T19:55:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "477584c50fe4427e04ffd1a35d7660b43f39e90f",
"body": null,
"is_bot": false,
"headline": "feat: add isApprovedVcep to Organization + GKS Agent",
"author_name": "Katie Stahl",
"author_login": "katie-perry",
"committed_at": "2025-12-15T19:33:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dfee333330bbcd73a252b2e31dedc8daad471058",
"body": "bump civicpy to version 5.1.0",
"is_bot": false,
"headline": "Merge pull request #199 from griffithlab/bump-version",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T21:44:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1929fdaa5bb32ca826d1f397a5df4d81c4f5dedd",
"body": null,
"is_bot": false,
"headline": "bump civicpy to version 5.1.0",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T20:51:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c171e36dc566f8c97947c99dc2a03b71600ff626",
"body": "Rename \"Endorsements\" to \"Approvals\"",
"is_bot": false,
"headline": "Merge pull request #198 from griffithlab/endorsement-rename",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T15:20:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5811e52c8512d0d05a1d7d1cef1fd8f8166c064c",
"body": null,
"is_bot": false,
"headline": "fix version pinning syntax",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T15:08:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "78f50bf0db58af3c54bbfcac2722a25e51d04867",
"body": null,
"is_bot": false,
"headline": "pin vcfpy version",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T15:04:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d2b421904bd3b4edee282fd07de3f302f59d3797",
"body": "Co-authored-by: Susanna Kiwala <susanna.kiwala@wustl.edu>",
"is_bot": false,
"headline": "Apply suggestion from @susannasiebert",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T15:01:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "909635df6706b10e9d64bb70e7257f1ab7d0c78e",
"body": "Co-authored-by: Susanna Kiwala <susanna.kiwala@wustl.edu>",
"is_bot": false,
"headline": "Apply suggestions from code review",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-12T15:00:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1d968e15c5dc71b45bbdc1e0a70f83645cb4ffbd",
"body": null,
"is_bot": false,
"headline": "dont use staging url for release",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-11T21:20:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6b5cf8e56702d162796f4570bccda250f6c83f89",
"body": null,
"is_bot": false,
"headline": "rename endorsements to approvals. update pkl cache",
"author_name": "Adam Coffman",
"author_login": "acoffman",
"committed_at": "2025-11-11T21:13:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d55d0a5d4e96c4642f8a9cc37edb1e61696bb2e1",
"body": "close #187\n\n---------\n\nCo-authored-by: Susanna Kiwala <susanna.kiwala@wustl.edu>",
"is_bot": false,
"headline": "feat: include variant info in CivicGksMolecularProfile mappings (#188)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-18T11:41:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "328c7918e469e6f390775bfd0d466839fc873863",
"body": "close #178",
"is_bot": false,
"headline": "feat: add gks support for phenotypes (#181)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-13T18:42:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bec7860d82466539d106b1a95a2c6c6155b90266",
"body": "close #169",
"is_bot": false,
"headline": "feat!: GKS records should align with ClinVar API (#180)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-13T11:41:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0ab6099254d66ba33478773eae4f1b8f865e40c4",
"body": "close #189",
"is_bot": false,
"headline": "fix: civic source should follow prefix from identifiers.org (#190)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-05T16:10:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ca90be424beec363ca59ddc63a30261b49bcda29",
"body": null,
"is_bot": false,
"headline": "chore: remove stale files (#184)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-01T17:35:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c13f421545e753f6c71315dc392b99a2473ce37a",
"body": "close #175",
"is_bot": false,
"headline": "chore: remove unused functions (#183)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-08-01T17:35:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8092238455bb8c6b8a3952d961bc199a16f68aba",
"body": "close #171\n\n* Removes class methods in favor of GKS CIViC Record classes\n* I was having some issues with Pydantic when I had the civic object as a private attribute. So for now, we're requiring this as an input parameter.\n* Also adds helper function for creating GKS assertion given CIViC assertion",
"is_bot": false,
"headline": "feat!: create gks record classes for other civic records (#179)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-07-31T22:33:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f75ea33922907ebf4478faed8700e53a64a71461",
"body": "close #170 \n\n* Bump ga4gh.va_spec version\n* pmid is now a string instead of an integer",
"is_bot": false,
"headline": "feat!: use ga4gh va-spec 1.0.0 models (#177)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-07-14T14:30:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "07bff09b4cc1c224566f5202337f5b7a8e93ae51",
"body": "close #174",
"is_bot": false,
"headline": "fix: return phenotypes for evidence items (#176)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-07-03T15:44:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "65e98f4df164265a3cad39467735f90f83a038eb",
"body": null,
"is_bot": false,
"headline": "fix(test): update test cache (#172)",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-07-01T18:01:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c0cb91ef3a40bdf8a9267e0b0d0e30b98fe44e8",
"body": "…ut` (#167)\n\nclose #166\n\n* Add additional fields to GKS JSON. `va_spec_python_version` moved to `metadata` field.",
"is_bot": false,
"headline": "feat!: add `metadata`, `failed_assertion_ids`, + `errors` to `GksOutp…",
"author_name": "Kori Kuzma",
"author_login": "korikuzma",
"committed_at": "2025-06-30T20:24:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6597361b6e83507d345119e0716709a567d8756b",
"body": null,
"is_bot": false,
"headline": "Unpin pandas version",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T18:56:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7617906c6cd8c99725eff8d0cae4612246c7b540",
"body": null,
"is_bot": false,
"headline": "Pin older sphinx version",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T18:25:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2b5ba809cc863eb7a7da8fb02eb6d58c438f987f",
"body": null,
"is_bot": false,
"headline": "Pin older sphinx version",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T18:15:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "938c93dd3a59a910e24776ad5588cf4590ef61bd",
"body": null,
"is_bot": false,
"headline": "Upgrade RTD environment.yml dependecies to python 3.11",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T17:42:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5abd87b7533a41ac182bc632571a82adcd7b6b92",
"body": null,
"is_bot": false,
"headline": "Update docs version",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T17:35:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7efa870706bb223415eed064b98013a3e9ea2200",
"body": null,
"is_bot": false,
"headline": "Update Dockerfile base to python 3.11",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T17:26:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0723d9d9ec64e2dc09bb787be017c6e452365514",
"body": null,
"is_bot": false,
"headline": "Upgrade to version 5.0.0",
"author_name": "Susanna Kiwala",
"author_login": "susannasiebert",
"committed_at": "2025-06-03T17:18:21Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 18,
"commits_last_year": 89,
"latest_release_at": "2026-04-23T19:50:58Z",
"latest_release_tag": "v5.4.0",
"releases_from_tags": false,
"days_since_last_push": 8,
"active_weeks_last_year": 19,
"days_since_latest_release": 93,
"mean_days_between_releases": 62.5
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 37,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "civicpy",
"exists": true,
"license": "MIT",
"keywords": [
"Development Status :: 3 - Alpha",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: MIT License",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics"
],
"ecosystem": "pypi",
"matches_repo": false,
"registry_url": "https://pypi.org/project/civicpy/",
"is_deprecated": false,
"latest_version": "5.4.0",
"repository_url": "http://civicpy.org",
"versions_count": 30,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": 1668,
"first_published_at": "2018-05-01T04:57:24.446657Z",
"latest_published_at": "2026-04-23T19:51:32.557508Z",
"latest_version_yanked": null,
"days_since_latest_publish": 93
}
]
},
"popularity": {
"forks": 8,
"stars": 13,
"watchers": 9,
"fork_history": {
"days": [
{
"date": "2019-08-26",
"count": 1
},
{
"date": "2020-12-25",
"count": 1
},
{
"date": "2022-04-27",
"count": 1
},
{
"date": "2022-09-17",
"count": 1
},
{
"date": "2024-04-21",
"count": 1
},
{
"date": "2024-11-28",
"count": 1
},
{
"date": "2025-03-24",
"count": 1
},
{
"date": "2026-04-01",
"count": 1
}
],
"complete": true,
"collected": 8,
"total_forks": 8
},
"star_history": null,
"open_issues_and_prs": 32
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"examples",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": true,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 135976,
"source_files_sampled": 17,
"oversized_source_files": 1,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"setup.py"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 29,
"malicious_count": 0,
"assessed_package": "pypi:civicpy@5.4.0",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "attrs",
"direct": false,
"version": "22.1.0",
"ecosystem": "pypi"
},
{
"name": "click",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "coverage",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "coveralls",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "deepdiff",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "deprecation",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "ga4gh-cat-vrs",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "ga4gh-va-spec",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "ga4gh-vrs",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "networkx",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "obonet",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pandas",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pysam",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "pytest",
"direct": false,
"version": "6.2.5",
"ecosystem": "pypi"
},
{
"name": "pytest-cov",
"direct": false,
"version": "5.0.0",
"ecosystem": "pypi"
},
{
"name": "python-dateutil",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "requests",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinx",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinxcontrib-programoutput",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "sphinxjp-themes-basicstrap",
"direct": false,
"version": null,
"ecosystem": "pypi"
},
{
"name": "vcfpy",
"direct": false,
"version": null,
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 21,
"direct_count": 0,
"indirect_count": 21
}
},
"maintainership": {
"issues": {
"open_prs": 4,
"merged_prs": 117,
"open_issues": 28,
"closed_ratio": 0.72,
"closed_issues": 72,
"closed_unmerged_prs": 24
},
"bus_factor": 2,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "susannasiebert",
"commits": 286,
"avatar_url": "https://avatars.githubusercontent.com/u/6617192?v=4"
},
{
"type": "User",
"login": "ahwagner",
"commits": 236,
"avatar_url": "https://avatars.githubusercontent.com/u/811065?v=4"
},
{
"type": "User",
"login": "korikuzma",
"commits": 63,
"avatar_url": "https://avatars.githubusercontent.com/u/42851808?v=4"
},
{
"type": "User",
"login": "acoffman",
"commits": 13,
"avatar_url": "https://avatars.githubusercontent.com/u/13370?v=4"
},
{
"type": "User",
"login": "katie-perry",
"commits": 11,
"avatar_url": "https://avatars.githubusercontent.com/u/13563629?v=4"
},
{
"type": "User",
"login": "jarbesfeld",
"commits": 6,
"avatar_url": "https://avatars.githubusercontent.com/u/50678786?v=4"
},
{
"type": "User",
"login": "emmcauley",
"commits": 3,
"avatar_url": "https://avatars.githubusercontent.com/u/22733781?v=4"
},
{
"type": "User",
"login": "dameyerdave",
"commits": 2,
"avatar_url": "https://avatars.githubusercontent.com/u/5663605?v=4"
},
{
"type": "User",
"login": "jsstevenson",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/12942397?v=4"
}
],
"contributors_sampled": 9,
"top_contributor_share": 0.461
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"release.yaml",
"tests.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 8,
"reason": "13 out of 15 merged PRs checked by a CI test -- score normalized to 8",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 6,
"reason": "Found 10/16 approved changesets -- score normalized to 6",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 13 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "dcfc0f9fa8644e659b23a71e3435d3d76538b552",
"ran_at": "2026-07-26T09:04:52Z",
"aggregate_score": 5.4,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-17T13:57:52Z",
"oldest_open_prs": [
{
"number": 233,
"created_at": "2026-06-05T14:48:46Z",
"last_comment_at": "2026-07-22T16:16:36Z",
"last_comment_author": "korikuzma"
},
{
"number": 235,
"created_at": "2026-06-16T11:38:35Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 240,
"created_at": "2026-06-24T14:05:34Z",
"last_comment_at": "2026-07-14T12:48:52Z",
"last_comment_author": "korikuzma"
},
{
"number": 245,
"created_at": "2026-07-15T15:08:30Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-07-17T13:56:34Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 1,
"created_at": "2018-05-01T21:18:03Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 4,
"created_at": "2018-05-17T16:22:24Z",
"last_comment_at": "2020-05-18T17:53:25Z",
"last_comment_author": "susannasiebert"
},
{
"number": 8,
"created_at": "2018-09-26T17:57:38Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 15,
"created_at": "2019-03-28T03:48:51Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 48,
"created_at": "2019-09-25T15:20:41Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 50,
"created_at": "2019-09-26T21:38:41Z",
"last_comment_at": "2020-05-18T19:56:30Z",
"last_comment_author": "ahwagner"
},
{
"number": 74,
"created_at": "2020-01-13T15:31:18Z",
"last_comment_at": "2020-05-18T20:08:42Z",
"last_comment_author": "ahwagner"
},
{
"number": 93,
"created_at": "2020-06-01T18:17:03Z",
"last_comment_at": "2020-06-01T18:25:12Z",
"last_comment_author": "susannasiebert"
},
{
"number": 101,
"created_at": "2020-07-09T18:15:53Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 119,
"created_at": "2021-10-26T12:05:51Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 142,
"created_at": "2023-05-03T16:50:11Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 153,
"created_at": "2024-11-01T15:55:07Z",
"last_comment_at": "2024-11-04T16:11:11Z",
"last_comment_author": "abidalikashi"
},
{
"number": 159,
"created_at": "2025-04-15T14:06:18Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 162,
"created_at": "2025-05-06T18:58:54Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 163,
"created_at": "2025-05-27T18:13:43Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 182,
"created_at": "2025-07-30T08:51:37Z",
"last_comment_at": "2025-08-04T10:57:22Z",
"last_comment_author": "jsstevenson"
},
{
"number": 185,
"created_at": "2025-08-04T15:47:42Z",
"last_comment_at": "2026-05-06T12:16:09Z",
"last_comment_author": "korikuzma"
},
{
"number": 191,
"created_at": "2025-08-05T14:47:43Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 194,
"created_at": "2025-08-15T17:46:03Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 195,
"created_at": "2025-09-04T19:18:25Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/griffithlab/civicpy",
"host": "github.com",
"name": "civicpy",
"owner": "griffithlab"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 64,
"inputs": {
"security": 63,
"vitality": 75,
"community": 39,
"governance": 68,
"engineering": 72
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 75,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "good",
"name": "Development activity",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"commits_last_year": 89,
"human_commit_share": 1,
"days_since_last_push": 8,
"active_weeks_last_year": 19
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 8 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 8
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "19/52 weeks with commits",
"points": 13.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 19
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "89 commits in the last year",
"points": 17.6,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 89
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "good",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 82,
"inputs": {
"releases_count": 18,
"latest_release_tag": "v5.4.0",
"releases_from_tags": false,
"days_since_latest_release": 93,
"mean_days_between_releases": 62.5
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "18 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 18
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 93 days ago",
"points": 27,
"status": "partial",
"details": [
{
"code": "release_recency",
"params": {
"days": 93
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~62.5 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 62.5
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 8,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 8 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 8
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 39,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 30,
"inputs": {
"forks": 8,
"stars": 13,
"watchers": 9,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "13 stars",
"points": 17.5,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 13
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "8 forks",
"points": 7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 8
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "9 watchers",
"points": 5,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 9
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 68,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "moderate",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"bus_factor": 2,
"contributors_sampled": 9,
"top_contributor_share": 0.461
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "2 contributor(s) cover half of all commits",
"points": 25.2,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 2
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 46% of commits",
"points": 12.1,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 46
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "9 contributors",
"points": 12.2,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 9
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 13 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 74,
"inputs": {
"merged_prs": 117,
"open_issues": 28,
"closed_issues": 72,
"issue_closed_ratio": 0.72,
"closed_unmerged_prs": 24
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "72% of issues closed",
"points": 33.7,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 72
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "117/141 decided PRs merged",
"points": 31.7,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 117,
"decided": 141
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 10/16 approved changesets -- score normalized to 6",
"points": 9,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 71,
"inputs": {
"followers": 179,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "griffithlab",
"public_repos": 86,
"account_age_days": 4377
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "179 followers of griffithlab",
"points": 16.2,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 179,
"login": "griffithlab"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "86 public repos, account ~11 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 86
}
},
{
"code": "account_age_years",
"params": {
"years": 11
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "good",
"name": "Engineering Quality",
"value": 72,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 64,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "2 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 2
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "13 out of 15 merged PRs checked by a CI test -- score normalized to 8",
"points": 16,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"topics": [
"civic"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "1 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 1
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 63,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 54,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 5.4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "13 out of 15 merged PRs checked by a CI test -- score normalized to 8",
"points": 2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 10/16 approved changesets -- score normalized to 6",
"points": 4.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 13 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "13 commit(s) and 14 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:civicpy@5.4.0 runtime dependency closure — what installing the published package pulls in — 29 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:civicpy@5.4.0",
"assessed": 29
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 29,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 29,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 16
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 41,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 24,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.45,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "45 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 24,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 45,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "moderate",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": true,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 52,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 135976,
"source_files_sampled": 17,
"oversized_source_files": 1
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "1/17 source files over 60KB",
"points": 51.8,
"status": "partial",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 17,
"oversized": 1
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"examples",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "examples, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "examples, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"pypi package 'civicpy' points at a different repository (http://civicpy.org); excluded from ecosystem scoring"
],
"report_type": "repository",
"generated_at": "2026-07-26T09:05:13.224906Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/g/griffithlab/civicpy.svg",
"full_name": "griffithlab/civicpy",
"license_state": "standard",
"license_spdx": "MIT"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — PyPI.