Public recordCritical
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-09-05 19:11 UTC
intermine / bluegenes-tool-cytoscape
Thin wrapper around the cytoscape-intermine library to present intermine gene & protein interaction networks in bluegenes
intermine/bluegenes-tool-cytoscape holds a health index of 11 out of 100, placing it in the Critical band. It scores highest on Sustainability & Governance (38/100) and lowest on Vitality (13/100). It was last updated 1373 days ago. A single contributor accounts for most of its recent work.
11
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.
11
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
The weighted overall 25 is calibrated to 19 on the published index scale (record calibration 2026-08-02).
Ownership
InterMineOrganization
27 followers185 public repossince Jan 2010
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish | Tags |
|---|---|---|---|---|---|---|
| npm | @intermine/bluegenes-cytoscape-interaction-network-viewer | 2.0.2 | 60 | 6 | 1965 days ago | bluegenes-intermine-tool |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
13
Development activity
1Critical
Abandonment alert
Work has arrived and nobody has attended to it
no human commit in 1965 daysautomated commits excludedpull requests left unanswereda published fix left unappliedOpenSSF Scorecard reports it unmaintainedOverall rating: At Risk ceiling
Silence alone is never the finding — a small, finished library may need no commits for years. This alert requires both: no human commit for a long time, and obligations the project is visibly not discharging. Automated commits do not count as maintenance.
How abandonment is assessedHow it's scored
| 0/36 | Push recency — last push 1,373 days ago |
| 0/36 | Commit cadence — 0/52 weeks with commits |
| 0/18 | Commit volume — 0 commits in the last year |
| 0/10 | OpenSSF Scorecard: Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
Inputs used
| commits_last_year | 0 |
| human_commit_share | — |
| days_since_last_push | 1,373 |
| active_weeks_last_year | 0 |
Release discipline
32At Risk
How it's scored
| 16.2/27 | Ships releases — 1 version tags (no GitHub releases) |
| 0/36 | Release recency — latest release 2,942 days ago |
| 12.6/27 | Release cadence — cadence unknown (single release) |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 1 |
| latest_release_tag | v1.0.0 |
| releases_from_tags | yes |
| days_since_latest_release | 2,942 |
| mean_days_between_releases | — |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
25
Popularity & adoption
6Critical
How it's scored
| 0/60 | Stars — 1 stars |
| 0/25 | Forks — 0 forks |
| 5.8/15 | Watchers — 12 watchers |
Inputs used
| forks | 0 |
| stars | 1 |
| watchers | 12 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
44Weak
How it's scored
| 22.5/22.5 | README |
| 16.9/22.5 | License — license file present, not a recognized license |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| readme_badges | 0 |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| readme_badge_services | — |
| has_pull_request_template | no |
Ecosystem adoption (downloads)
30At Risk
How it's scored
| 23.8/80 | Monthly downloads — 60 downloads/month across npm |
| 0/20 | Registry dependents — not reported by this ecosystem |
Inputs used
| packages | @intermine/bluegenes-cytoscape-interaction-network-viewer |
| dependents | — |
| ecosystems | npm |
| total_downloads | — |
| monthly_downloads | 60 |
| unverified_packages_excluded | — |
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
38
Maintainer resilience (bus factor)
24At Risk
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 9/22.5 | Commit distribution — top contributor authored 60% of commits |
| 2.7/13.5 | Contributor breadth — 2 contributors |
| 3/10 | OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 2 |
| top_contributor_share | 0.6 |
Issue & PR responsiveness
1Critical
How it's scored
| 0/42 | Issue resolution — 0% of issues closed |
| 0/30 | PR acceptance — 0/4 decided PRs merged |
| 0/13 | Newcomer PR acceptance — no first-time contributor's PR decided in 30d |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/10 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 0 |
| open_issues | 1 |
| closed_issues | 0 |
| prs_merged_7d | 0 |
| prs_decided_7d | 0 |
| prs_merged_30d | 0 |
| prs_decided_30d | 0 |
| issue_closed_ratio | 0 |
| closed_unmerged_prs | 4 |
| first_time_authors_30d | 0 |
| first_time_prs_merged_30d | 0 |
| first_time_prs_decided_30d | 0 |
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.
Ownership & stewardship
65Good
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 10.4/25 | Owner reach — 27 followers of intermine |
| 25/25 | Track record — 185 public repos, account ~16 yr old |
Inputs used
| followers | 27 |
| owner_type | Organization |
| is_verified | no |
| owner_login | intermine |
| public_repos | 185 |
| account_age_days | 6,082 |
Package maintenance
69Good
How it's scored
| 25/25 | Published & resolvable — 1 package(s) on npm |
| 4/35 | Publish recency — latest publish 1,965 days ago |
| 20/20 | Version history — 6 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | @intermine/bluegenes-cytoscape-interaction-network-viewer |
| ecosystems | npm |
| any_deprecated | no |
| min_days_since_publish | 1,965 |
Engineering Quality
Are baseline engineering and documentation practices in place?
27
Engineering practices
1Critical
How it's scored
| 0/24 | CI workflows |
| 0/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | no |
| has_tests | no |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.
Documentation
65Good
How it's scored
| 30/30 | README |
| 0/25 | Documentation directory |
| 15/15 | Documentation / homepage site — http://www.intermine.org |
| 10/10 | Repository description |
| 10/10 | Topics — 1 topics |
| 0/10 | Wiki |
Inputs used
| topics | bluegenes-tool |
| has_wiki | no |
| homepage | — |
| docs_site | http://www.intermine.org |
| has_readme | yes |
| has_docs_dir | no |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
20
Security posture
16Critical
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0/2.5 | CI-Tests — no data |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/10 approved changesets -- score normalized to 0 |
| 0.8/2.5 | Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
| 0/10 | Dangerous-Workflow — no data |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.2/2.5 | License — license file detected |
| 0/7.5 | Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| 0/5 | Packaging — no data |
| 0/5 | Pinned-Dependencies — no data |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — no data |
| 0/7.5 | Vulnerabilities — 68 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 12 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 6 |
| scorecard_aggregate | 1.6 |
Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.
Dependency advisories
34At Risk
How it's scored
| 15.4/35 | Direct dependencies free of known advisories — 1 affected: serve 9.6.0 (high) |
| 2.5/25 | Indirect dependencies free of known advisories — 7 affected: loader-utils 0.2.17 (critical 9.8), xmldom 0.1.31 (critical 9.8), cross-spawn 5.1.0 (high 7.5), +4 more |
| 15.7/40 | No advisories left outstanding — 8 advisory-carrying package(s) unaddressed past 90 days; oldest published 2,184 days ago |
Inputs used
| source | osv |
| advisories | 22 |
| affected_packages | 8 |
| assessed_packages | 179 |
| unassessed_packages | 0 |
| affected_by_severity | critical 2, high 5, moderate 1 |
| direct_affected_packages | 1 |
Matched the npm:@intermine/bluegenes-cytoscape-interaction-network-viewer@2.0.2 runtime dependency closure — what installing the published package pulls in — 179 packages. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.
17
Agent context & guidance
1Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — no data |
Inputs used
| has_llms_txt | no |
| llms_txt_url | — |
| legible_history_share | — |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
Verify loop (build / test / typecheck)
14Critical
How it's scored
| 0/18 | One-command bootstrap |
| 0/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 10/10 | Reproducible environment — lockfile |
| 0/10 | Demonstrated agent practice — no data |
| 0/8 | Automated maintenance — no data |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — no data |
Inputs used
| has_nix | no |
| has_tests | no |
| lockfiles | package-lock.json |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | — |
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance, OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.
Code legibility for models
55Moderate
How it's scored
| 0/45 | Type-checkable code — HTML without a type-check config |
| 55/55 | Manageable file sizes — 0/2 source files over 60KB |
Inputs used
| primary_language | HTML |
| largest_source_bytes | 829 |
| source_files_sampled | 2 |
| oversized_source_files | 0 |
Key facts
1GitHub stars
2contributors
0commits, last 12 months
1,373days since last push
1releases
1bus factor
1open issues
npmpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
More detail
OpenSSF Scorecard 1.6 / 10
1.6aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| n/a | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/10 approved changesets -- score normalized to 0 |
| 3 | Contributors | project has 1 contributing companies or organizations -- score normalized to 3 |
| n/a | Dangerous-Workflow | no workflows found |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 9 | License | license file detected |
| 0 | Maintained | 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| n/a | Packaging | packaging workflow not detected |
| n/a | Pinned-Dependencies | no dependencies found |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| n/a | Token-Permissions | No tokens found |
| 0 | Vulnerabilities | 68 existing vulnerabilities detected |
Direct dependencies 5
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| npm | @intermine/cytoscape-intermine | ^1.1.4 | package.json |
| npm | cytoscape | ^3.18.2 | package.json |
| npm | es6-promise | ^4.2.8 | package.json |
| npm | serve | ^9.6.0 | package.json |
| npm | underscore | ^1.13.1 | package.json |
All dependencies 503
Full resolved dependency set from the GitHub dependency graph: 5 direct and 498 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| npm | @intermine/cytoscape-intermine | 1.1.4 | direct |
| npm | cytoscape | 3.18.2 | direct |
| npm | es6-promise | 4.2.8 | direct |
| npm | serve | 9.6.0 | direct |
| npm | underscore | 1.13.1 | direct |
| npm | @webassemblyjs/ast | 1.9.0 | indirect |
| npm | @webassemblyjs/floating-point-hex-parser | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-api-error | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-buffer | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-code-frame | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-fsm | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-module-context | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-wasm-bytecode | 1.9.0 | indirect |
| npm | @webassemblyjs/helper-wasm-section | 1.9.0 | indirect |
| npm | @webassemblyjs/ieee754 | 1.9.0 | indirect |
| npm | @webassemblyjs/leb128 | 1.9.0 | indirect |
| npm | @webassemblyjs/utf8 | 1.9.0 | indirect |
| npm | @webassemblyjs/wasm-edit | 1.9.0 | indirect |
| npm | @webassemblyjs/wasm-gen | 1.9.0 | indirect |
| npm | @webassemblyjs/wasm-opt | 1.9.0 | indirect |
| npm | @webassemblyjs/wasm-parser | 1.9.0 | indirect |
| npm | @webassemblyjs/wast-parser | 1.9.0 | indirect |
| npm | @webassemblyjs/wast-printer | 1.9.0 | indirect |
| npm | @xtuc/ieee754 | 1.2.0 | indirect |
| npm | @xtuc/long | 4.2.2 | indirect |
| npm | @zeit/schemas | 2.1.1 | indirect |
| npm | acorn | 6.4.2 | indirect |
| npm | ajv | 6.12.6 | indirect |
| npm | ajv | 6.5.2 | indirect |
| npm | ajv-errors | 1.0.1 | indirect |
| npm | ajv-keywords | 3.5.2 | indirect |
| npm | amdefine | 1.0.1 | indirect |
| npm | ansi-align | 2.0.0 | indirect |
| npm | ansi-regex | 3.0.0 | indirect |
| npm | ansi-regex | 4.1.0 | indirect |
| npm | ansi-styles | 3.2.1 | indirect |
| npm | anymatch | 2.0.0 | indirect |
| npm | anymatch | 3.1.2 | indirect |
| npm | append-buffer | 1.0.2 | indirect |
| npm | aproba | 1.2.0 | indirect |
| npm | arch | 2.1.1 | indirect |
| npm | arg | 2.0.0 | indirect |
| npm | arr-diff | 4.0.0 | indirect |
| npm | arr-flatten | 1.1.0 | indirect |
| npm | arr-union | 3.1.0 | indirect |
| npm | array-unique | 0.3.2 | indirect |
| npm | asn1.js | 5.4.1 | indirect |
| npm | assert | 1.5.0 | indirect |
| npm | assign-symbols | 1.0.0 | indirect |
| npm | ast-types | 0.9.6 | indirect |
| npm | async-each | 1.0.3 | indirect |
| npm | atob | 2.1.2 | indirect |
| npm | backbone-events-standalone | 0.2.7 | indirect |
| npm | balanced-match | 1.0.0 | indirect |
| npm | base | 0.11.2 | indirect |
| npm | Base64 | 0.2.1 | indirect |
| npm | base64-js | 1.5.1 | indirect |
| npm | big.js | 3.2.0 | indirect |
| npm | big.js | 5.2.2 | indirect |
| npm | binary-extensions | 1.13.1 | indirect |
| npm | binary-extensions | 2.2.0 | indirect |
| npm | bluebird | 3.7.2 | indirect |
| npm | bn.js | 4.12.0 | indirect |
| npm | bn.js | 5.2.0 | indirect |
| npm | boxen | 1.3.0 | indirect |
| npm | brace-expansion | 1.1.11 | indirect |
| npm | braces | 2.3.2 | indirect |
| npm | braces | 3.0.2 | indirect |
| npm | brorand | 1.1.0 | indirect |
| npm | browserify-aes | 1.2.0 | indirect |
| npm | browserify-cipher | 1.0.1 | indirect |
| npm | browserify-des | 1.0.2 | indirect |
| npm | browserify-rsa | 4.1.0 | indirect |
| npm | browserify-sign | 4.2.1 | indirect |
| npm | browserify-zlib | 0.2.0 | indirect |
| npm | buffer | 4.9.2 | indirect |
| npm | buffer-equal | 1.0.0 | indirect |
| npm | buffer-from | 1.1.1 | indirect |
| npm | buffer-xor | 1.0.3 | indirect |
| npm | builtin-status-codes | 3.0.0 | indirect |
| npm | bytes | 3.0.0 | indirect |
| npm | cacache | 12.0.4 | indirect |
| npm | cache-base | 1.0.1 | indirect |
| npm | call-bind | 1.0.2 | indirect |
| npm | camel-case | 3.0.0 | indirect |
| npm | camelcase | 4.1.0 | indirect |
| npm | camelcase | 5.3.1 | indirect |
| npm | chalk | 2.4.1 | indirect |
| npm | chalk | 2.4.2 | indirect |
| npm | chokidar | 2.1.8 | indirect |
| npm | chokidar | 3.5.1 | indirect |
| npm | chownr | 1.1.4 | indirect |
| npm | chrome-trace-event | 1.0.3 | indirect |
| npm | cipher-base | 1.0.4 | indirect |
| npm | class-utils | 0.3.6 | indirect |
| npm | clean-css | 3.4.28 | indirect |
| npm | clean-css | 4.1.11 | indirect |
| npm | cli-boxes | 1.0.0 | indirect |
| npm | clipboardy | 1.2.3 | indirect |
| npm | cliui | 5.0.0 | indirect |
| npm | clone | 2.1.2 | indirect |
| npm | clone-buffer | 1.0.0 | indirect |
| npm | clone-stats | 1.0.0 | indirect |
| npm | cloneable-readable | 1.1.3 | indirect |
| npm | collection-visit | 1.0.0 | indirect |
| npm | color-convert | 1.9.2 | indirect |
| npm | color-name | 1.1.1 | indirect |
| npm | commander | 2.16.0 | indirect |
| npm | commander | 2.20.3 | indirect |
| npm | commander | 2.8.1 | indirect |
| npm | commondir | 1.0.1 | indirect |
| npm | component-emitter | 1.3.0 | indirect |
| npm | concat-map | 0.0.1 | indirect |
| npm | concat-stream | 1.6.2 | indirect |
| npm | console-browserify | 1.2.0 | indirect |
| npm | constants-browserify | 1.0.0 | indirect |
| npm | content-disposition | 0.5.2 | indirect |
| npm | convert-source-map | 1.7.0 | indirect |
| npm | copy-anything | 2.0.3 | indirect |
| npm | copy-concurrently | 1.0.5 | indirect |
| npm | copy-descriptor | 0.1.1 | indirect |
| npm | core-util-is | 1.0.2 | indirect |
| npm | create-ecdh | 4.0.4 | indirect |
| npm | create-hash | 1.2.0 | indirect |
| npm | create-hmac | 1.1.7 | indirect |
| npm | cross-spawn | 5.1.0 | indirect |
| npm | cross-spawn | 6.0.5 | indirect |
| npm | crypto-browserify | 3.12.0 | indirect |
| npm | cyclist | 1.0.1 | indirect |
| npm | debug | 2.6.9 | indirect |
| npm | decamelize | 1.2.0 | indirect |
| npm | decode-uri-component | 0.2.0 | indirect |
| npm | deep-extend | 0.6.0 | indirect |
| npm | define-properties | 1.1.3 | indirect |
| npm | define-property | 0.2.5 | indirect |
| npm | define-property | 1.0.0 | indirect |
| npm | define-property | 2.0.2 | indirect |
| npm | des.js | 1.0.1 | indirect |
| npm | detect-file | 1.0.0 | indirect |
| npm | diffie-hellman | 5.0.3 | indirect |
| npm | domain-browser | 1.2.0 | indirect |
| npm | duplexify | 3.7.1 | indirect |
| npm | ejs-loader | 0.3.7 | indirect |
| npm | elliptic | 6.5.4 | indirect |
| npm | emoji-regex | 7.0.3 | indirect |
| npm | emojis-list | 2.1.0 | indirect |
| npm | emojis-list | 3.0.0 | indirect |
| npm | end-of-stream | 1.4.4 | indirect |
| npm | enhanced-resolve | 4.5.0 | indirect |
| npm | errno | 0.1.8 | indirect |
| npm | es6-templates | 0.2.3 | indirect |
| npm | escape-string-regexp | 1.0.5 | indirect |
| npm | eslint-scope | 4.0.3 | indirect |
| npm | esprima | 3.1.3 | indirect |
| npm | esrecurse | 4.3.0 | indirect |
| npm | estraverse | 4.3.0 | indirect |
| npm | estraverse | 5.2.0 | indirect |
| npm | events | 3.3.0 | indirect |
| npm | evp_bytestokey | 1.0.3 | indirect |
| npm | execa | 0.7.0 | indirect |
| npm | execa | 0.8.0 | indirect |
| npm | expand-brackets | 2.1.4 | indirect |
| npm | expand-tilde | 2.0.2 | indirect |
| npm | extend | 3.0.2 | indirect |
| npm | extend-shallow | 2.0.1 | indirect |
| npm | extend-shallow | 3.0.2 | indirect |
| npm | extglob | 2.0.4 | indirect |
| npm | fast-deep-equal | 2.0.1 | indirect |
| npm | fast-deep-equal | 3.1.3 | indirect |
| npm | fast-json-stable-stringify | 2.0.0 | indirect |
| npm | fast-url-parser | 1.1.3 | indirect |
| npm | fastparse | 1.1.1 | indirect |
| npm | figgy-pudding | 3.5.2 | indirect |
| npm | fill-range | 4.0.0 | indirect |
| npm | fill-range | 7.0.1 | indirect |
| npm | find-cache-dir | 2.1.0 | indirect |
| npm | find-up | 3.0.0 | indirect |
| npm | findup-sync | 3.0.0 | indirect |
| npm | flush-write-stream | 1.1.1 | indirect |
| npm | for-in | 1.0.2 | indirect |
| npm | fragment-cache | 0.2.1 | indirect |
| npm | from2 | 2.3.0 | indirect |
| npm | fs-mkdirp-stream | 1.0.0 | indirect |
| npm | fs-write-stream-atomic | 1.0.10 | indirect |
| npm | fs.realpath | 1.0.0 | indirect |
| npm | fsevents | 1.2.13 | indirect |
| npm | fsevents | 2.3.2 | indirect |
| npm | function-bind | 1.1.1 | indirect |
| npm | get-caller-file | 2.0.5 | indirect |
| npm | get-intrinsic | 1.1.1 | indirect |
| npm | get-stream | 3.0.0 | indirect |
| npm | get-value | 2.0.6 | indirect |
| npm | glob | 7.1.6 | indirect |
| npm | glob-parent | 3.1.0 | indirect |
| npm | glob-parent | 5.1.2 | indirect |
| npm | glob-slash | 1.0.0 | indirect |
| npm | glob-slasher | 1.0.1 | indirect |
| npm | glob-stream | 6.1.0 | indirect |
| npm | global-modules | 1.0.0 | indirect |
| npm | global-modules | 2.0.0 | indirect |
| npm | global-prefix | 1.0.2 | indirect |
| npm | global-prefix | 3.0.0 | indirect |
| npm | graceful-fs | 4.2.6 | indirect |
| npm | graceful-readlink | 1.0.1 | indirect |
| npm | has | 1.0.3 | indirect |
| npm | has-flag | 3.0.0 | indirect |
| npm | has-symbols | 1.0.2 | indirect |
| npm | has-value | 0.3.1 | indirect |
| npm | has-value | 1.0.0 | indirect |
| npm | has-values | 0.1.4 | indirect |
| npm | has-values | 1.0.0 | indirect |
| npm | hash-base | 3.1.0 | indirect |
| npm | hash.js | 1.1.7 | indirect |
| npm | he | 1.1.1 | indirect |
| npm | heap | 0.2.6 | indirect |
| npm | hmac-drbg | 1.0.1 | indirect |
| npm | homedir-polyfill | 1.0.3 | indirect |
| npm | html-loader | 0.5.5 | indirect |
| npm | html-minifier | 3.5.19 | indirect |
| npm | http-browserify | 1.7.0 | indirect |
| npm | https-browserify | 1.0.0 | indirect |
| npm | ieee754 | 1.2.1 | indirect |
| npm | iferr | 0.1.5 | indirect |
| npm | image-size | 0.5.5 | indirect |
| npm | imjs | 3.18.1 | indirect |
| npm | import-local | 2.0.0 | indirect |
| npm | imurmurhash | 0.1.4 | indirect |
| npm | infer-owner | 1.0.4 | indirect |
| npm | inflight | 1.0.6 | indirect |
| npm | inherits | 2.0.1 | indirect |
| npm | inherits | 2.0.3 | indirect |
| npm | inherits | 2.0.4 | indirect |
| npm | ini | 1.3.5 | indirect |
| npm | interpret | 1.4.0 | indirect |
| npm | is-absolute | 1.0.0 | indirect |
| npm | is-accessor-descriptor | 0.1.6 | indirect |
| npm | is-accessor-descriptor | 1.0.0 | indirect |
| npm | is-binary-path | 1.0.1 | indirect |
| npm | is-binary-path | 2.1.0 | indirect |
| npm | is-buffer | 1.1.6 | indirect |
| npm | is-data-descriptor | 0.1.4 | indirect |
| npm | is-data-descriptor | 1.0.0 | indirect |
| npm | is-descriptor | 0.1.6 | indirect |
| npm | is-descriptor | 1.0.2 | indirect |
| npm | is-extendable | 0.1.1 | indirect |
| npm | is-extendable | 1.0.1 | indirect |
| npm | is-extglob | 2.1.1 | indirect |
| npm | is-fullwidth-code-point | 2.0.0 | indirect |
| npm | is-glob | 3.1.0 | indirect |
| npm | is-glob | 4.0.1 | indirect |
| npm | is-negated-glob | 1.0.0 | indirect |
| npm | is-number | 3.0.0 | indirect |
| npm | is-number | 7.0.0 | indirect |
| npm | is-plain-object | 2.0.4 | indirect |
| npm | is-relative | 1.0.0 | indirect |
| npm | is-stream | 1.1.0 | indirect |
| npm | is-unc-path | 1.0.0 | indirect |
| npm | is-utf8 | 0.2.1 | indirect |
| npm | is-valid-glob | 1.0.0 | indirect |
| npm | is-what | 3.14.1 | indirect |
| npm | is-windows | 1.0.2 | indirect |
| npm | is-wsl | 1.1.0 | indirect |
| npm | isarray | 1.0.0 | indirect |
| npm | isexe | 2.0.0 | indirect |
| npm | isobject | 2.1.0 | indirect |
| npm | isobject | 3.0.1 | indirect |
| npm | json-parse-better-errors | 1.0.2 | indirect |
| npm | json-schema-traverse | 0.4.1 | indirect |
| npm | json-stable-stringify-without-jsonify | 1.0.1 | indirect |
| npm | json5 | 0.5.1 | indirect |
| npm | json5 | 1.0.1 | indirect |
| npm | kind-of | 3.2.2 | indirect |
| npm | kind-of | 4.0.0 | indirect |
| npm | kind-of | 5.1.0 | indirect |
| npm | kind-of | 6.0.3 | indirect |
| npm | lazystream | 1.0.0 | indirect |
| npm | lead | 1.0.0 | indirect |
| npm | less | 3.13.1 | indirect |
| npm | less-plugin-clean-css | 1.5.1 | indirect |
| npm | loader-runner | 2.4.0 | indirect |
| npm | loader-utils | 0.2.17 | indirect |
| npm | loader-utils | 1.1.0 | indirect |
| npm | loader-utils | 1.4.0 | indirect |
| npm | locate-path | 3.0.0 | indirect |
| npm | lodash | 4.17.10 | indirect |
| npm | lodash | 4.17.21 | indirect |
| npm | lodash._objecttypes | 2.4.1 | indirect |
| npm | lodash.debounce | 4.0.8 | indirect |
| npm | lodash.isobject | 2.4.1 | indirect |
| npm | lower-case | 1.1.4 | indirect |
| npm | lru-cache | 4.1.3 | indirect |
| npm | lru-cache | 5.1.1 | indirect |
| npm | make-dir | 2.1.0 | indirect |
| npm | map-cache | 0.2.2 | indirect |
| npm | map-visit | 1.0.0 | indirect |
| npm | md5.js | 1.3.5 | indirect |
| npm | memory-fs | 0.4.1 | indirect |
| npm | memory-fs | 0.5.0 | indirect |
| npm | micromatch | 3.1.10 | indirect |
| npm | miller-rabin | 4.0.1 | indirect |
| npm | mime | 1.6.0 | indirect |
| npm | mime-db | 1.33.0 | indirect |
| npm | mime-types | 2.1.18 | indirect |
| npm | minimalistic-assert | 1.0.1 | indirect |
| npm | minimalistic-crypto-utils | 1.0.1 | indirect |
| npm | minimatch | 3.0.4 | indirect |
| npm | minimist | 1.2.0 | indirect |
| npm | minimist | 1.2.5 | indirect |
| npm | mississippi | 3.0.0 | indirect |
| npm | mixin-deep | 1.3.2 | indirect |
| npm | mkdirp | 0.5.5 | indirect |
| npm | move-concurrently | 1.0.1 | indirect |
| npm | ms | 2.0.0 | indirect |
| npm | nanomatch | 1.2.13 | indirect |
| npm | native-request | 1.0.8 | indirect |
| npm | neo-async | 2.6.2 | indirect |
| npm | nice-try | 1.0.5 | indirect |
| npm | no-case | 2.3.2 | indirect |
| npm | node-libs-browser | 2.2.1 | indirect |
| npm | normalize-path | 2.1.1 | indirect |
| npm | normalize-path | 3.0.0 | indirect |
| npm | now-and-later | 2.0.1 | indirect |
| npm | npm-run-path | 2.0.2 | indirect |
| npm | object-assign | 4.1.1 | indirect |
| npm | object-copy | 0.1.0 | indirect |
| npm | object-keys | 1.1.1 | indirect |
| npm | object-visit | 1.0.1 | indirect |
| npm | object.assign | 4.1.2 | indirect |
| npm | object.pick | 1.3.0 | indirect |
| npm | once | 1.4.0 | indirect |
| npm | ordered-read-streams | 1.0.1 | indirect |
| npm | os-browserify | 0.3.0 | indirect |
| npm | p-finally | 1.0.0 | indirect |
| npm | p-limit | 2.3.0 | indirect |
| npm | p-locate | 3.0.0 | indirect |
| npm | p-try | 2.2.0 | indirect |
| npm | pako | 1.0.11 | indirect |
| npm | parallel-transform | 1.2.0 | indirect |
| npm | param-case | 2.1.1 | indirect |
| npm | parse-asn1 | 5.1.6 | indirect |
| npm | parse-passwd | 1.0.0 | indirect |
| npm | pascalcase | 0.1.1 | indirect |
| npm | path-browserify | 0.0.1 | indirect |
| npm | path-dirname | 1.0.2 | indirect |
| npm | path-exists | 3.0.0 | indirect |
| npm | path-is-absolute | 1.0.1 | indirect |
| npm | path-is-inside | 1.0.2 | indirect |
| npm | path-key | 2.0.1 | indirect |
| npm | path-to-regexp | 2.2.1 | indirect |
| npm | pbkdf2 | 3.1.2 | indirect |
| npm | picomatch | 2.2.3 | indirect |
| npm | pify | 4.0.1 | indirect |
| npm | pkg-dir | 3.0.0 | indirect |
| npm | posix-character-classes | 0.1.1 | indirect |
| npm | private | 0.1.8 | indirect |
| npm | process | 0.11.10 | indirect |
| npm | process-nextick-args | 2.0.1 | indirect |
| npm | promise-inflight | 1.0.1 | indirect |
| npm | prr | 1.0.1 | indirect |
| npm | pseudomap | 1.0.2 | indirect |
| npm | public-encrypt | 4.0.3 | indirect |
| npm | pump | 2.0.1 | indirect |
| npm | pump | 3.0.0 | indirect |
| npm | pumpify | 1.5.1 | indirect |
| npm | punycode | 1.3.2 | indirect |
| npm | punycode | 1.4.1 | indirect |
| npm | punycode | 2.1.1 | indirect |
| npm | querystring | 0.2.0 | indirect |
| npm | querystring-es3 | 0.2.1 | indirect |
| npm | randombytes | 2.1.0 | indirect |
| npm | randomfill | 1.0.4 | indirect |
| npm | range-parser | 1.2.0 | indirect |
| npm | raw-loader | 0.5.1 | indirect |
| npm | rc | 1.2.8 | indirect |
| npm | readable-stream | 2.3.7 | indirect |
| npm | readable-stream | 3.6.0 | indirect |
| npm | readdirp | 2.2.1 | indirect |
| npm | readdirp | 3.5.0 | indirect |
| npm | recast | 0.11.23 | indirect |
| npm | regex-not | 1.0.2 | indirect |
| npm | registry-auth-token | 3.3.2 | indirect |
| npm | registry-url | 3.1.0 | indirect |
| npm | relateurl | 0.2.7 | indirect |
| npm | remove-bom-buffer | 3.0.0 | indirect |
| npm | remove-bom-stream | 1.2.0 | indirect |
| npm | remove-trailing-separator | 1.1.0 | indirect |
| npm | repeat-element | 1.1.4 | indirect |
| npm | repeat-string | 1.6.1 | indirect |
| npm | replace-ext | 1.0.1 | indirect |
| npm | require-directory | 2.1.1 | indirect |
| npm | require-main-filename | 2.0.0 | indirect |
| npm | requirejs | 2.3.6 | indirect |
| npm | resolve-cwd | 2.0.0 | indirect |
| npm | resolve-dir | 1.0.1 | indirect |
| npm | resolve-from | 3.0.0 | indirect |
| npm | resolve-options | 1.1.0 | indirect |
| npm | resolve-url | 0.2.1 | indirect |
| npm | ret | 0.1.15 | indirect |
| npm | rimraf | 2.7.1 | indirect |
| npm | ripemd160 | 2.0.2 | indirect |
| npm | run-queue | 1.0.3 | indirect |
| npm | safe-buffer | 5.1.2 | indirect |
| npm | safe-buffer | 5.2.1 | indirect |
| npm | safe-regex | 1.1.0 | indirect |
| npm | safer-buffer | 2.1.2 | indirect |
| npm | schema-utils | 1.0.0 | indirect |
| npm | semver | 5.7.1 | indirect |
| npm | serialize-javascript | 4.0.0 | indirect |
| npm | serve-handler | 4.0.0 | indirect |
| npm | set-blocking | 2.0.0 | indirect |
| npm | set-value | 2.0.1 | indirect |
| npm | setimmediate | 1.0.5 | indirect |
| npm | sha.js | 2.4.11 | indirect |
| npm | shebang-command | 1.2.0 | indirect |
| npm | shebang-regex | 1.0.0 | indirect |
| npm | signal-exit | 3.0.2 | indirect |
| npm | snapdragon | 0.8.2 | indirect |
| npm | snapdragon-node | 2.1.1 | indirect |
| npm | snapdragon-util | 3.0.1 | indirect |
| npm | source-list-map | 2.0.1 | indirect |
| npm | source-map | 0.4.4 | indirect |
| npm | source-map | 0.5.7 | indirect |
| npm | source-map | 0.6.1 | indirect |
| npm | source-map-resolve | 0.5.3 | indirect |
| npm | source-map-support | 0.5.19 | indirect |
| npm | source-map-url | 0.4.1 | indirect |
| npm | split-string | 3.1.0 | indirect |
| npm | ssri | 6.0.2 | indirect |
| npm | static-extend | 0.1.2 | indirect |
| npm | stream-browserify | 2.0.2 | indirect |
| npm | stream-each | 1.2.3 | indirect |
| npm | stream-http | 2.8.3 | indirect |
| npm | stream-shift | 1.0.1 | indirect |
| npm | string-width | 2.1.1 | indirect |
| npm | string-width | 3.1.0 | indirect |
| npm | string_decoder | 1.1.1 | indirect |
| npm | strip-ansi | 4.0.0 | indirect |
| npm | strip-ansi | 5.2.0 | indirect |
| npm | strip-eof | 1.0.0 | indirect |
| npm | strip-json-comments | 2.0.1 | indirect |
| npm | supports-color | 5.4.0 | indirect |
| npm | supports-color | 5.5.0 | indirect |
| npm | supports-color | 6.1.0 | indirect |
| npm | tapable | 1.1.3 | indirect |
| npm | term-size | 1.2.0 | indirect |
| npm | terser | 4.8.0 | indirect |
| npm | terser-webpack-plugin | 1.4.5 | indirect |
| npm | through | 2.3.8 | indirect |
| npm | through2 | 2.0.5 | indirect |
| npm | through2-filter | 3.0.0 | indirect |
| npm | timers-browserify | 2.0.12 | indirect |
| npm | to-absolute-glob | 2.0.2 | indirect |
| npm | to-arraybuffer | 1.0.1 | indirect |
| npm | to-object-path | 0.3.0 | indirect |
| npm | to-regex | 3.0.2 | indirect |
| npm | to-regex-range | 2.1.1 | indirect |
| npm | to-regex-range | 5.0.1 | indirect |
| npm | to-through | 2.0.0 | indirect |
| npm | toxic | 1.0.1 | indirect |
| npm | tslib | 1.14.1 | indirect |
| npm | tty-browserify | 0.0.0 | indirect |
| npm | typedarray | 0.0.6 | indirect |
| npm | uglify-js | 3.4.7 | indirect |
| npm | unc-path-regex | 0.1.2 | indirect |
| npm | union-value | 1.0.1 | indirect |
| npm | unique-filename | 1.1.1 | indirect |
| npm | unique-slug | 2.0.2 | indirect |
| npm | unique-stream | 2.3.1 | indirect |
| npm | unset-value | 1.0.0 | indirect |
| npm | upath | 1.2.0 | indirect |
| npm | update-check | 1.5.2 | indirect |
| npm | upper-case | 1.1.3 | indirect |
| npm | uri-js | 4.2.2 | indirect |
| npm | urix | 0.1.0 | indirect |
| npm | url | 0.11.0 | indirect |
| npm | use | 3.1.1 | indirect |
| npm | util | 0.10.3 | indirect |
| npm | util | 0.11.1 | indirect |
| npm | util-deprecate | 1.0.2 | indirect |
| npm | v8-compile-cache | 2.3.0 | indirect |
| npm | value-or-function | 3.0.0 | indirect |
| npm | vinyl | 2.2.1 | indirect |
| npm | vinyl-fs | 3.0.3 | indirect |
| npm | vinyl-sourcemap | 1.1.0 | indirect |
| npm | vm-browserify | 1.1.2 | indirect |
| npm | watchpack | 1.7.5 | indirect |
| npm | watchpack-chokidar2 | 2.0.1 | indirect |
| npm | webpack | 4.46.0 | indirect |
| npm | webpack-cli | 3.3.12 | indirect |
| npm | webpack-sources | 1.4.3 | indirect |
| npm | which | 1.3.1 | indirect |
| npm | which-module | 2.0.0 | indirect |
| npm | widest-line | 2.0.0 | indirect |
| npm | worker-farm | 1.7.0 | indirect |
| npm | wrap-ansi | 5.1.0 | indirect |
| npm | wrappy | 1.0.2 | indirect |
| npm | xmldom | 0.1.31 | indirect |
| npm | xtend | 4.0.2 | indirect |
| npm | y18n | 4.0.3 | indirect |
| npm | yallist | 2.1.2 | indirect |
| npm | yallist | 3.1.1 | indirect |
| npm | yargs | 13.3.2 | indirect |
| npm | yargs-parser | 13.1.2 | indirect |
Dependency advisories 8
Installing npm:@intermine/bluegenes-cytoscape-interaction-network-viewer@2.0.2 pulls in 179 packages, direct and transitive: 8 carry known advisories, of which 1 are direct dependencies.
| Package | Version | Relation | Severity | Advisories | Fixed in |
|---|---|---|---|---|---|
| loader-utils | 0.2.17 | indirect | critical | 1 | 2.0.3 |
| xmldom | 0.1.31 | indirect | critical | 9 | 0.9.12 |
| serve | 9.6.0 | direct | high | 3 | 10.1.2 |
| cross-spawn | 5.1.0 | indirect | high | 1 | 7.0.5 |
| json5 | 0.5.1 | indirect | high | 1 | 2.2.2 |
| minimatch | 3.0.4 | indirect | high | 4 | 10.2.3 |
| path-to-regexp | 2.2.1 | indirect | high | 1 | 8.0.0 |
| ajv | 6.5.2 | indirect | moderate | 2 | 8.18.0 |
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
Feedback
Spotted something off in this report, or have thoughts to share? Wrong measurements, missed tooling, ideas, questions — anything is welcome. Every message is read and gets a response.
Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.34.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — npm.