Public recordModerate
Software health reportschema 0.11.0 · metrics 1.13.0 · 2026-07-17 02:11 UTC
rbvi / chimerax
Source code for molecular graphics program UCSF ChimeraX
rbvi/chimerax holds a health index of 65 out of 100, placing it in the Moderate band. It scores highest on Vitality (82/100) and lowest on Community & Adoption (51/100). It was last updated today. 2 contributors account for most of its recent work.
65
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
65
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
RBVIOrganization
28 followers57 public repossince Jun 2013
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish |
|---|---|---|---|---|---|
| PyPI | ChimeraX | 0.1.8 | - | 9 | 705 days ago |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
82
Development activity
100Excellent
How it's scored
| 36/36 | Push recency — last push 0 days ago |
| 36/36 | Commit cadence — 52/52 weeks with commits |
| 18/18 | Commit volume — 2,167 commits in the last year |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 3 issue activity found in the last 90 days -- score normalized to 10 |
Inputs used
| commits_last_year | 2,167 |
| human_commit_share | — |
| days_since_last_push | 0 |
| active_weeks_last_year | 52 |
Release discipline
54Moderate
How it's scored
| 27/27 | Ships releases — 3 releases published |
| 16.2/36 | Release recency — latest release 357 days ago |
| 5.4/27 | Release cadence — a release every ~719 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 3 |
| latest_release_tag | v1.10.1 |
| releases_from_tags | no |
| days_since_latest_release | 357 |
| mean_days_between_releases | 719 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
51
Popularity & adoption
57Moderate
How it's scored
| 39.3/60 | Stars — 264 stars |
| 13.5/25 | Forks — 43 forks |
| 4.3/15 | Watchers — 7 watchers |
Inputs used
| forks | 43 |
| stars | 264 |
| watchers | 7 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
44At risk
How it's scored
| 22.5/22.5 | README |
| 16.9/22.5 | License — license file present, not a recognized license |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
66
Maintainer resilience (bus factor)
63Moderate
How it's scored
| 25.2/54 | Bus factor — 2 contributor(s) cover half of all commits |
| 14.2/22.5 | Commit distribution — top contributor authored 37% of commits |
| 13.5/13.5 | Contributor breadth — 14 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 6 contributing companies or organizations |
Inputs used
| bus_factor | 2 |
| contributors_sampled | 14 |
| top_contributor_share | 0.368 |
Issue & PR responsiveness
61Moderate
How it's scored
| 43.2/46.8 | Issue resolution — 92% of issues closed |
| 18.1/38.3 | PR acceptance — 92/194 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/29 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 92 |
| open_issues | 3 |
| closed_issues | 37 |
| issue_closed_ratio | 0.925 |
| closed_unmerged_prs | 102 |
Ownership & stewardship
65Moderate
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 10.5/25 | Owner reach — 28 followers of RBVI |
| 24.8/25 | Track record — 57 public repos, account ~13 yr old |
Inputs used
| followers | 28 |
| owner_type | Organization |
| is_verified | — |
| owner_login | RBVI |
| public_repos | 57 |
| account_age_days | 4,789 |
Package maintenance
79Good
How it's scored
| 25/25 | Published & resolvable — 1 package(s) on pypi |
| 14/35 | Publish recency — latest publish 705 days ago |
| 20/20 | Version history — 9 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | ChimeraX |
| ecosystems | pypi |
| any_deprecated | no |
| min_days_since_publish | 705 |
Engineering Quality
Are baseline engineering and documentation practices in place?
65
Engineering practices
48At risk
How it's scored
| 24/24 | CI workflows — 16 workflow(s) |
| 24/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — 0 out of 1 merged PRs checked by a CI test -- score normalized to 0 |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Documentation
90Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 15/15 | Documentation / homepage site — https://www.rbvi.ucsf.edu/chimerax/ |
| 10/10 | Repository description |
| 0/10 | Topics |
| 10/10 | Wiki |
Inputs used
| topics | — |
| has_wiki | yes |
| homepage | https://www.rbvi.ucsf.edu/chimerax/ |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
53
Security posture
53Moderate
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — no data |
| 0/2.5 | CI-Tests — 0 out of 1 merged PRs checked by a CI test -- score normalized to 0 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/29 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 6 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 7.5/7.5 | Dependency-Update-Tool — update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.2/2.5 | License — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 3 issue activity found in the last 90 days -- score normalized to 10 |
| 0/5 | Packaging — no data |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 15 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 3 |
| scorecard_aggregate | 5.3 |
Excluded from scoring (no data or not applicable): branch_protection, packaging, signed_releases. Remaining weights renormalized.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
61
Agent context & guidance
75Good
How it's scored
| 45/45 | Agent instructions — AGENTS.md |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — no data |
Inputs used
| has_llms_txt | no |
| legible_history_share | — |
| agent_instruction_files | AGENTS.md |
| agent_instruction_max_bytes | 4,245 |
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
Verify loop (build / test / typecheck)
61Moderate
How it's scored
| 18/18 | One-command bootstrap — Makefile, docs/Makefile, docs/css/Makefile, docs/devel/Makefile, docs/js/Makefile, docs/pdbimages/Makefile, docs/quickstart/Makefile, docs/user/Makefile, docs/user/dicom/Makefile, docs/user/tools/Makefile, docs/user/tutorials/Makefile, prereqs/Makefile, prereqs/PyQt/Makefile, prereqs/Python/Makefile, prereqs/ambertools/Makefile, prereqs/ffmpeg/Makefile, prereqs/imex/Makefile, prereqs/linux_buildenv/Makefile, prereqs/pips/Makefile, prereqs/pips/package_checker/Makefile, prereqs/qtshim/Makefile, prereqs/win32/Makefile, src/Makefile, src/apps/ChimeraX/Makefile, src/apps/Makefile, src/apps/moduleapp/Makefile, src/apps/scanpdb/Makefile, src/apps/structcomp/Makefile, src/apps/valgrind/Makefile, src/bundles/Makefile, src/bundles/add_charge/Makefile, src/bundles/addh/Makefile, src/bundles/alignment_algs/Makefile, src/bundles/alignment_algs/_sw/Makefile, src/bundles/alignment_algs/src/NeedlemanWunsch/Makefile, src/bundles/alignment_headers/Makefile, src/bundles/alphafold/Makefile, src/bundles/altloc_explorer/Makefile, src/bundles/amber_info/Makefile, src/bundles/animations/Makefile, src/bundles/aniso/Makefile, src/bundles/arrays/Makefile, src/bundles/atom_search/Makefile, src/bundles/atomic/Makefile, src/bundles/atomic_lib/Makefile, src/bundles/axes_planes/Makefile, src/bundles/basic_actions/Makefile, src/bundles/bild/Makefile, src/bundles/blastprotein/Makefile, src/bundles/bogus/Makefile, src/bundles/boltz/Makefile, src/bundles/bond_rot/Makefile, src/bundles/bug_reporter/Makefile, src/bundles/build_structure/Makefile, src/bundles/bumps/Makefile, src/bundles/bundle_builder/Makefile, src/bundles/bundle_builder/tests/bundles/toml_test_bundle/Makefile, src/bundles/bundle_builder/tests/bundles/xml_test_bundle/Makefile, src/bundles/buttons/Makefile, src/bundles/cage_builder/Makefile, src/bundles/cellpack/Makefile, src/bundles/centroids/Makefile, src/bundles/change_chains/Makefile, src/bundles/check_waters/Makefile, src/bundles/chem_group/Makefile, src/bundles/chem_group/_cg/Makefile, src/bundles/clashes/Makefile, src/bundles/cluster/Makefile, src/bundles/cmd_line/Makefile, src/bundles/color_actions/Makefile, src/bundles/color_globe/Makefile, src/bundles/color_key/Makefile, src/bundles/connect_structure/Makefile, src/bundles/core/Makefile, src/bundles/core/src/commands/Makefile, src/bundles/core/src/toolshed/Makefile, src/bundles/core_formats/Makefile, src/bundles/coulombic/Makefile, src/bundles/crosslinks/Makefile, src/bundles/crystal/Makefile, src/bundles/crystal_contacts/Makefile, src/bundles/data_formats/Makefile, src/bundles/diffplot/Makefile, src/bundles/dist_monitor/Makefile, src/bundles/dock_prep/Makefile, src/bundles/dssp/Makefile, src/bundles/dssp/dssp_cpp/Makefile, src/bundles/emdb_sff/Makefile, src/bundles/esmfold/Makefile, src/bundles/exp_cmd/Makefile, src/bundles/file_history/Makefile, src/bundles/function_key/Makefile, src/bundles/geometry/Makefile, src/bundles/geometry/src/Makefile, src/bundles/gltf/Makefile, src/bundles/graphics/Makefile, src/bundles/hbonds/Makefile, src/bundles/help_viewer/Makefile, src/bundles/hkcage/Makefile, src/bundles/ihm/Makefile, src/bundles/image_formats/Makefile, src/bundles/imod/Makefile, src/bundles/interfaces/Makefile, src/bundles/io/Makefile, src/bundles/items_inspection/Makefile, src/bundles/iupac/Makefile, src/bundles/kvfinder/Makefile, src/bundles/label/Makefile, src/bundles/leap_motion/Makefile, src/bundles/lighting_gui/Makefile, src/bundles/linux_support/Makefile, src/bundles/list_info/Makefile, src/bundles/log/Makefile, src/bundles/looking_glass/Makefile, src/bundles/maestro/Makefile, src/bundles/map/Makefile, src/bundles/map_data/Makefile, src/bundles/map_data/src/Makefile, src/bundles/map_data/src/amira/Makefile, src/bundles/map_data/src/apbs/Makefile, src/bundles/map_data/src/brix/Makefile, src/bundles/map_data/src/ccp4/Makefile, src/bundles/map_data/src/cmap/Makefile, src/bundles/map_data/src/delphi/Makefile, src/bundles/map_data/src/deltavision/Makefile, src/bundles/map_data/src/dock/Makefile, src/bundles/map_data/src/dsn6/Makefile, src/bundles/map_data/src/emanhdf/Makefile, src/bundles/map_data/src/gaussian/Makefile, src/bundles/map_data/src/gopenmol/Makefile, src/bundles/map_data/src/hdf/Makefile, src/bundles/map_data/src/imagestack/Makefile, src/bundles/map_data/src/imagic/Makefile, src/bundles/map_data/src/imod/Makefile, src/bundles/map_data/src/ims/Makefile, src/bundles/map_data/src/macmolplt/Makefile, src/bundles/map_data/src/mrc/Makefile, src/bundles/map_data/src/netcdf/Makefile, src/bundles/map_data/src/pif/Makefile, src/bundles/map_data/src/priism/Makefile, src/bundles/map_data/src/profec/Makefile, src/bundles/map_data/src/situs/Makefile, src/bundles/map_data/src/spider/Makefile, src/bundles/map_data/src/tom_em/Makefile, src/bundles/map_data/src/uhbd/Makefile, src/bundles/map_data/src/xplor/Makefile, src/bundles/map_eraser/Makefile, src/bundles/map_filter/Makefile, src/bundles/map_fit/Makefile, src/bundles/map_series/Makefile, src/bundles/markers/Makefile, src/bundles/mask/Makefile, src/bundles/match_align/Makefile, src/bundles/match_maker/Makefile, src/bundles/mcopy/Makefile, src/bundles/mcp_server/Makefile, src/bundles/md_crds/Makefile, src/bundles/md_crds/gromacs/Makefile, src/bundles/md_crds/src/dcd/MDToolsMarch97/Makefile, src/bundles/md_crds/src/dcd/Makefile, src/bundles/meeting/Makefile, src/bundles/metal_geom/Makefile, src/bundles/minimize/Makefile, src/bundles/mlp/Makefile, src/bundles/mlp/_mlp/Makefile, src/bundles/mmcif/Makefile, src/bundles/mmcif/mmcif_cpp/Makefile, src/bundles/mmcif/mmcif_cpp/readcif_cpp/Makefile, src/bundles/mmcif/mmcif_cpp/readcif_cpp/cifgrep/Makefile, src/bundles/mmcif/mmcif_cpp/readcif_cpp/docs/Makefile, src/bundles/mmtf/Makefile, src/bundles/model_archive/Makefile, src/bundles/model_panel/Makefile, src/bundles/model_series/Makefile, src/bundles/modeller/Makefile, src/bundles/mol2/Makefile, src/bundles/mole/Makefile, src/bundles/morph/Makefile, src/bundles/mouse_modes/Makefile, src/bundles/movie/Makefile, src/bundles/mutation_scores/Makefile, src/bundles/neuron/Makefile, src/bundles/nih_presets/Makefile, src/bundles/nmrstar/Makefile, src/bundles/nucleotides/Makefile, src/bundles/open_command/Makefile, src/bundles/openfold/Makefile, src/bundles/orthopick/Makefile, src/bundles/pdb/Makefile, src/bundles/pdb/pdbio_cpp/Makefile, src/bundles/pdb_bio/Makefile, src/bundles/pdb_images/Makefile, src/bundles/pdb_lib/Makefile, src/bundles/pdb_matrices/Makefile, src/bundles/phenix_ui/Makefile, src/bundles/pick_blobs/Makefile, src/bundles/positions/Makefile, src/bundles/preset_mgr/Makefile, src/bundles/profile_grids/Makefile, src/bundles/pubchem/Makefile, src/bundles/read_pbonds/Makefile, src/bundles/realsense/Makefile, src/bundles/registration/Makefile, src/bundles/remote_control/Makefile, src/bundles/render_by_attr/Makefile, src/bundles/renumber_residues/Makefile, src/bundles/residue_fit/Makefile, src/bundles/rest_server/Makefile, src/bundles/rna_layout/Makefile, src/bundles/rotamer_libs/Dunbrack/Makefile, src/bundles/rotamer_libs/Dynameomics/Makefile, src/bundles/rotamer_libs/Makefile, src/bundles/rotamer_libs/Richardson/Makefile, src/bundles/rotamers/Makefile, src/bundles/save_command/Makefile, src/bundles/scenes/Makefile, src/bundles/scheme_mgr/Makefile, src/bundles/sdf/Makefile, src/bundles/segger/Makefile, src/bundles/segment/Makefile, src/bundles/segment/_segment/Makefile, src/bundles/segmentations/Makefile, src/bundles/sel_inspector/Makefile, src/bundles/seq_view/Makefile, src/bundles/seqalign/Makefile, src/bundles/seqalign/src/io/Makefile, src/bundles/shape/Makefile, src/bundles/shell/Makefile, src/bundles/shortcuts/Makefile, src/bundles/show_sequences/Makefile, src/bundles/sideview/Makefile, src/bundles/signal_viewer/Makefile, src/bundles/sim_matrices/Makefile, src/bundles/similarstructures/Makefile, src/bundles/smiles/Makefile, src/bundles/smooth_lines/Makefile, src/bundles/snfg/Makefile, src/bundles/spacenavigator/Makefile, src/bundles/speech/Makefile, src/bundles/std_commands/Makefile, src/bundles/stl/Makefile, src/bundles/stl/_stl/Makefile, src/bundles/storm/Makefile, src/bundles/struct_measure/Makefile, src/bundles/struts/Makefile, src/bundles/surface/Makefile, src/bundles/swap_res/Makefile, src/bundles/swapaa/Makefile, src/bundles/tape_measure/Makefile, src/bundles/task_manager/Makefile, src/bundles/test/Makefile, src/bundles/to_quest/Makefile, src/bundles/toolbar/Makefile, src/bundles/toolshed_utils/Makefile, src/bundles/topography/Makefile, src/bundles/tug/Makefile, src/bundles/tug_ligands/Makefile, src/bundles/ui/Makefile, src/bundles/umap/Makefile, src/bundles/uniprot/Makefile, src/bundles/unit_cell/Makefile, src/bundles/viewdock/Makefile, src/bundles/viewdock/src/example_files/Makefile, src/bundles/viperdb/Makefile, src/bundles/vive/Makefile, src/bundles/volume_menu/Makefile, src/bundles/vrml/Makefile, src/bundles/vtk/Makefile, src/bundles/wavefront_obj/Makefile, src/bundles/webcam/Makefile, src/bundles/webservices/Makefile, src/bundles/write_dms/Makefile, src/bundles/zone/Makefile, src/examples/Makefile, src/examples/sample/Makefile, src/examples/tutorials/Makefile, src/examples/tutorials/hello_world/Makefile, src/examples/tutorials/tut_cmd/Makefile, src/examples/tutorials/tut_fetch/Makefile, src/examples/tutorials/tut_preset/Makefile, src/examples/tutorials/tut_read/Makefile, src/examples/tutorials/tut_save/Makefile, src/examples/tutorials/tut_sel/Makefile, src/examples/tutorials/tut_tool_html/Makefile, src/examples/tutorials/tut_tool_qt/Makefile, utils/git/Makefile, vdocs/Makefile |
| 22/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 10/10 | Reproducible environment — Dockerfile |
| 0/10 | Demonstrated agent practice — no data |
| 5/8 | Automated maintenance — dependency automation configured, none observed in the sampled commits |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | yes |
| typed_language | no |
| bootstrap_files | Makefile, docs/Makefile, docs/css/Makefile, docs/devel/Makefile, docs/js/Makefile, docs/pdbimages/Makefile, docs/quickstart/Makefile, docs/user/Makefile, docs/user/dicom/Makefile, docs/user/tools/Makefile, docs/user/tutorials/Makefile, prereqs/Makefile, prereqs/PyQt/Makefile, prereqs/Python/Makefile, prereqs/ambertools/Makefile, prereqs/ffmpeg/Makefile, prereqs/imex/Makefile, prereqs/linux_buildenv/Makefile, prereqs/pips/Makefile, prereqs/pips/package_checker/Makefile, prereqs/qtshim/Makefile, prereqs/win32/Makefile, src/Makefile, src/apps/ChimeraX/Makefile, src/apps/Makefile, src/apps/moduleapp/Makefile, src/apps/scanpdb/Makefile, src/apps/structcomp/Makefile, src/apps/valgrind/Makefile, src/bundles/Makefile, src/bundles/add_charge/Makefile, src/bundles/addh/Makefile, src/bundles/alignment_algs/Makefile, src/bundles/alignment_algs/_sw/Makefile, src/bundles/alignment_algs/src/NeedlemanWunsch/Makefile, src/bundles/alignment_headers/Makefile, src/bundles/alphafold/Makefile, src/bundles/altloc_explorer/Makefile, src/bundles/amber_info/Makefile, src/bundles/animations/Makefile, src/bundles/aniso/Makefile, src/bundles/arrays/Makefile, src/bundles/atom_search/Makefile, src/bundles/atomic/Makefile, src/bundles/atomic_lib/Makefile, src/bundles/axes_planes/Makefile, src/bundles/basic_actions/Makefile, src/bundles/bild/Makefile, src/bundles/blastprotein/Makefile, src/bundles/bogus/Makefile, src/bundles/boltz/Makefile, src/bundles/bond_rot/Makefile, src/bundles/bug_reporter/Makefile, src/bundles/build_structure/Makefile, src/bundles/bumps/Makefile, src/bundles/bundle_builder/Makefile, src/bundles/bundle_builder/tests/bundles/toml_test_bundle/Makefile, src/bundles/bundle_builder/tests/bundles/xml_test_bundle/Makefile, src/bundles/buttons/Makefile, src/bundles/cage_builder/Makefile, src/bundles/cellpack/Makefile, src/bundles/centroids/Makefile, src/bundles/change_chains/Makefile, src/bundles/check_waters/Makefile, src/bundles/chem_group/Makefile, src/bundles/chem_group/_cg/Makefile, src/bundles/clashes/Makefile, src/bundles/cluster/Makefile, src/bundles/cmd_line/Makefile, src/bundles/color_actions/Makefile, src/bundles/color_globe/Makefile, src/bundles/color_key/Makefile, src/bundles/connect_structure/Makefile, src/bundles/core/Makefile, src/bundles/core/src/commands/Makefile, src/bundles/core/src/toolshed/Makefile, src/bundles/core_formats/Makefile, src/bundles/coulombic/Makefile, src/bundles/crosslinks/Makefile, src/bundles/crystal/Makefile, src/bundles/crystal_contacts/Makefile, src/bundles/data_formats/Makefile, src/bundles/diffplot/Makefile, src/bundles/dist_monitor/Makefile, src/bundles/dock_prep/Makefile, src/bundles/dssp/Makefile, src/bundles/dssp/dssp_cpp/Makefile, src/bundles/emdb_sff/Makefile, src/bundles/esmfold/Makefile, src/bundles/exp_cmd/Makefile, src/bundles/file_history/Makefile, src/bundles/function_key/Makefile, src/bundles/geometry/Makefile, src/bundles/geometry/src/Makefile, src/bundles/gltf/Makefile, src/bundles/graphics/Makefile, src/bundles/hbonds/Makefile, src/bundles/help_viewer/Makefile, src/bundles/hkcage/Makefile, src/bundles/ihm/Makefile, src/bundles/image_formats/Makefile, src/bundles/imod/Makefile, src/bundles/interfaces/Makefile, src/bundles/io/Makefile, src/bundles/items_inspection/Makefile, src/bundles/iupac/Makefile, src/bundles/kvfinder/Makefile, src/bundles/label/Makefile, src/bundles/leap_motion/Makefile, src/bundles/lighting_gui/Makefile, src/bundles/linux_support/Makefile, src/bundles/list_info/Makefile, src/bundles/log/Makefile, src/bundles/looking_glass/Makefile, src/bundles/maestro/Makefile, src/bundles/map/Makefile, src/bundles/map_data/Makefile, src/bundles/map_data/src/Makefile, src/bundles/map_data/src/amira/Makefile, src/bundles/map_data/src/apbs/Makefile, src/bundles/map_data/src/brix/Makefile, src/bundles/map_data/src/ccp4/Makefile, src/bundles/map_data/src/cmap/Makefile, src/bundles/map_data/src/delphi/Makefile, src/bundles/map_data/src/deltavision/Makefile, src/bundles/map_data/src/dock/Makefile, src/bundles/map_data/src/dsn6/Makefile, src/bundles/map_data/src/emanhdf/Makefile, src/bundles/map_data/src/gaussian/Makefile, src/bundles/map_data/src/gopenmol/Makefile, src/bundles/map_data/src/hdf/Makefile, src/bundles/map_data/src/imagestack/Makefile, src/bundles/map_data/src/imagic/Makefile, src/bundles/map_data/src/imod/Makefile, src/bundles/map_data/src/ims/Makefile, src/bundles/map_data/src/macmolplt/Makefile, src/bundles/map_data/src/mrc/Makefile, src/bundles/map_data/src/netcdf/Makefile, src/bundles/map_data/src/pif/Makefile, src/bundles/map_data/src/priism/Makefile, src/bundles/map_data/src/profec/Makefile, src/bundles/map_data/src/situs/Makefile, src/bundles/map_data/src/spider/Makefile, src/bundles/map_data/src/tom_em/Makefile, src/bundles/map_data/src/uhbd/Makefile, src/bundles/map_data/src/xplor/Makefile, src/bundles/map_eraser/Makefile, 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src/bundles/similarstructures/Makefile, src/bundles/smiles/Makefile, src/bundles/smooth_lines/Makefile, src/bundles/snfg/Makefile, src/bundles/spacenavigator/Makefile, src/bundles/speech/Makefile, src/bundles/std_commands/Makefile, src/bundles/stl/Makefile, src/bundles/stl/_stl/Makefile, src/bundles/storm/Makefile, src/bundles/struct_measure/Makefile, src/bundles/struts/Makefile, src/bundles/surface/Makefile, src/bundles/swap_res/Makefile, src/bundles/swapaa/Makefile, src/bundles/tape_measure/Makefile, src/bundles/task_manager/Makefile, src/bundles/test/Makefile, src/bundles/to_quest/Makefile, src/bundles/toolbar/Makefile, src/bundles/toolshed_utils/Makefile, src/bundles/topography/Makefile, src/bundles/tug/Makefile, src/bundles/tug_ligands/Makefile, src/bundles/ui/Makefile, src/bundles/umap/Makefile, src/bundles/uniprot/Makefile, src/bundles/unit_cell/Makefile, src/bundles/viewdock/Makefile, src/bundles/viewdock/src/example_files/Makefile, src/bundles/viperdb/Makefile, src/bundles/vive/Makefile, src/bundles/volume_menu/Makefile, src/bundles/vrml/Makefile, src/bundles/vtk/Makefile, src/bundles/wavefront_obj/Makefile, src/bundles/webcam/Makefile, src/bundles/webservices/Makefile, src/bundles/write_dms/Makefile, src/bundles/zone/Makefile, src/examples/Makefile, src/examples/sample/Makefile, src/examples/tutorials/Makefile, src/examples/tutorials/hello_world/Makefile, src/examples/tutorials/tut_cmd/Makefile, src/examples/tutorials/tut_fetch/Makefile, src/examples/tutorials/tut_preset/Makefile, src/examples/tutorials/tut_read/Makefile, src/examples/tutorials/tut_save/Makefile, src/examples/tutorials/tut_sel/Makefile, src/examples/tutorials/tut_tool_html/Makefile, src/examples/tutorials/tut_tool_qt/Makefile, utils/git/Makefile, vdocs/Makefile |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Excluded from scoring (no data or not applicable): Demonstrated agent practice. Remaining weights renormalized.
Code legibility for models
53Moderate
How it's scored
| 0/45 | Type-checkable code — Python without a type-check config |
| 53.4/55 | Manageable file sizes — 50/1,683 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 230,059 |
| source_files_sampled | 1,683 |
| oversized_source_files | 50 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples, notebooks, sample |
Inputs used
| example_dirs | examples, notebooks, sample |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
264GitHub stars
14contributors
2,167commits, last 12 months
0days since last push
3releases
2bus factor
3open issues
PyPIpackage ecosystems
More detail
OpenSSF Scorecard 5.3 / 10
5.3aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| n/a | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 0 | CI-Tests | 0 out of 1 merged PRs checked by a CI test -- score normalized to 0 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/29 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 6 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 10 | Dependency-Update-Tool | update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 9 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 3 issue activity found in the last 90 days -- score normalized to 10 |
| n/a | Packaging | packaging workflow not detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
All dependencies 84
Full resolved dependency set from the GitHub dependency graph: 0 direct and 84 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | aiohttp | 3.11.1 | indirect |
| PyPI | appdirs | 1.4.4 | indirect |
| PyPI | beautifulsoup4 | 4.13.5 | indirect |
| PyPI | blockdiag | 3.0.0 | indirect |
| PyPI | chimerax-alignmentmatrices | — | indirect |
| PyPI | chimerax-alignments | — | indirect |
| PyPI | chimerax-alphafold | — | indirect |
| PyPI | chimerax-atomic | — | indirect |
| PyPI | chimerax-bundlebuilder | — | indirect |
| PyPI | chimerax-core | — | indirect |
| PyPI | chimerax-dataformats | — | indirect |
| PyPI | chimerax-geometry | — | indirect |
| PyPI | chimerax-graphics | — | indirect |
| PyPI | chimerax-help | — | indirect |
| PyPI | chimerax-mapdata | — | indirect |
| PyPI | chimerax-movie | — | indirect |
| PyPI | chimerax-opencommand | — | indirect |
| PyPI | chimerax-pdb | — | indirect |
| PyPI | chimerax-savecommand | — | indirect |
| PyPI | chimerax-scenes | — | indirect |
| PyPI | chimerax-stdcommands | — | indirect |
| PyPI | chimerax-ui | — | indirect |
| PyPI | chimerax-webservices | — | indirect |
| PyPI | colorama | 0.4.6 | indirect |
| PyPI | comtypes | 1.4.11 | indirect |
| PyPI | cython | 3.2.4 | indirect |
| PyPI | distro | 1.9.0 | indirect |
| PyPI | docutils | 0.21.2 | indirect |
| PyPI | filelock | 3.19.1 | indirect |
| PyPI | grako | 3.16.5 | indirect |
| PyPI | html2text | 2025.4.15 | indirect |
| PyPI | ihm | 2.2 | indirect |
| PyPI | imagecodecs | 2026.6.26 | indirect |
| PyPI | ipykernel | 7.3.0 | indirect |
| PyPI | ipython | 9.14.1 | indirect |
| PyPI | jedi | 0.20.0 | indirect |
| PyPI | jinja2 | 3.1.6 | indirect |
| PyPI | jupyter-client | 8.9.1 | indirect |
| PyPI | line-profiler | 5.0.0 | indirect |
| PyPI | lxml | 6.0.2 | indirect |
| PyPI | lz4 | 4.4.5 | indirect |
| PyPI | markdown | 3.8.2 | indirect |
| PyPI | matplotlib | 3.10.7 | indirect |
| PyPI | mcp | 1.28.1 | indirect |
| PyPI | msgpack | 1.1.1 | indirect |
| PyPI | netcdf4 | 1.7.4 | indirect |
| PyPI | networkx | 3.3 | indirect |
| PyPI | numpy | 2.4.6 | indirect |
| PyPI | openmm | 8.4.0 | indirect |
| PyPI | openmm-cuda-12 | 8.4.0 | indirect |
| PyPI | openvr | 1.26.701 | indirect |
| PyPI | packaging | 25.0 | indirect |
| PyPI | parmed | 4.2.2 | indirect |
| PyPI | pep517 | 0.13.1 | indirect |
| PyPI | pickleshare | 0.7.5 | indirect |
| PyPI | pillow | 12.3.0 | indirect |
| PyPI | pkginfo | 1.12.1.2 | indirect |
| PyPI | psutil | 7.0.0 | indirect |
| PyPI | pybind11 | 3.0.1 | indirect |
| PyPI | pycollada | 0.8 | indirect |
| PyPI | pygments | 2.18.0 | indirect |
| PyPI | pynmrstar | 3.5.1 | indirect |
| PyPI | pyopengl | 3.1.10 | indirect |
| PyPI | pyopengl-accelerate | 3.1.10 | indirect |
| PyPI | pyopenxr | 1.1.4501 | indirect |
| PyPI | python-dateutil | 2.9.0.post0 | indirect |
| PyPI | pywin32 | 311 | indirect |
| PyPI | qtconsole | 5.7.2 | indirect |
| PyPI | qtshim | 1.2.2 | indirect |
| PyPI | requests | 2.32.5 | indirect |
| PyPI | scipy | 1.18.0 | indirect |
| PyPI | six | 1.17.0 | indirect |
| PyPI | sortedcontainers | 2.4.0 | indirect |
| PyPI | sphinx | 9.0.4 | indirect |
| PyPI | sphinx-autodoc-typehints | 3.6.1 | indirect |
| PyPI | sphinxcontrib-blockdiag | 3.0.0 | indirect |
| PyPI | superqt | 0.7.6 | indirect |
| PyPI | tables | 3.11.1 | indirect |
| PyPI | tifffile | 2025.3.13 | indirect |
| PyPI | tinyarray | 1.2.5 | indirect |
| PyPI | traitlets | 5.15.1 | indirect |
| PyPI | webcolors | 24.11.1 | indirect |
| PyPI | wheel-filename | 1.4.2 | indirect |
| PyPI | wmi | 1.5.1 | indirect |
Raw JSON report machine-readable
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{
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{
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],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
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},
"warnings": [],
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"generated_at": "2026-07-17T02:11:13.281560Z",
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"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/r/rbvi/chimerax.svg",
"full_name": "rbvi/chimerax",
"license_state": "custom",
"license_spdx": null
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.11.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — PyPI.