Public recordModerate
Software health reportschema 0.9.0 · metrics 1.13.0 · 2026-07-14 02:47 UTC
zaeleus / noodles
Bioinformatics I/O libraries in Rust
zaeleus/noodles holds a health index of 53 out of 100, placing it in the Moderate band. It scores highest on Community & Adoption (69/100) and lowest on AI Readiness (26/100). It was last updated 2 days ago. A single contributor accounts for most of its recent work.
53
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
53
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
Michael MaciasPersonal account
134 followers13 public repossince Jan 2010@stjude
This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish |
|---|---|---|---|---|---|
| crates.io | noodles-bam | 0.91.0 | 18,916 | 97 | 3 days ago |
| crates.io | noodles-bcf | 0.87.0 | 5,117 | 97 | 3 days ago |
| crates.io | noodles-bed | 0.35.0 | 4,027 | 35 | 3 days ago |
| crates.io | noodles-bgzf | 0.48.0 | 123,309 | 48 | 3 days ago |
| crates.io | noodles-core | 0.20.0 | 121,474 | 29 | 68 days ago |
| crates.io | noodles-cram | 0.95.0 | 7,562 | 104 | 3 days ago |
| crates.io | noodles-csi | 0.57.0 | 108,070 | 65 | 3 days ago |
| crates.io | noodles-fasta | 0.63.0 | 27,595 | 72 | 3 days ago |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
60
Development activity
100Excellent
How it's scored
| 36/36 | Push recency — last push 2 days ago |
| 36/36 | Commit cadence — 52/52 weeks with commits |
| 18/18 | Commit volume — 778 commits in the last year |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 8 issue activity found in the last 90 days -- score normalized to 10 |
Inputs used
| commits_last_year | 778 |
| human_commit_share | — |
| days_since_last_push | 2 |
| active_weeks_last_year | 52 |
Release discipline
1Critical
How it's scored
| 0/27 | Ships releases — no releases published |
| 0/36 | Release recency — no releases |
| 0/27 | Release cadence — no releases |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 0 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
69
Popularity & adoption
70Good
How it's scored
| 46.3/60 | Stars — 711 stars |
| 16/25 | Forks — 83 forks |
| 7.2/15 | Watchers — 21 watchers |
Inputs used
| forks | 83 |
| stars | 711 |
| watchers | 21 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
50Moderate
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (MIT) |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Ecosystem adoption (downloads)
94Excellent
How it's scored
| 74.9/80 | Monthly downloads — 416,070 downloads/month across crates |
| 0/20 | Registry dependents — not reported by this ecosystem |
Inputs used
| packages | noodles-bam, noodles-bcf, noodles-bed, noodles-bgzf, noodles-core, noodles-cram, noodles-csi, noodles-fasta |
| dependents | — |
| ecosystems | crates |
| total_downloads | 3,985,459 |
| monthly_downloads | 416,070 |
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
60
Maintainer resilience (bus factor)
29Critical
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 0.2/22.5 | Commit distribution — top contributor authored 99% of commits |
| 13.5/13.5 | Contributor breadth — 23 contributors |
| 6/10 | OpenSSF Scorecard: Contributors — project has 2 contributing companies or organizations -- score normalized to 6 |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 23 |
| top_contributor_share | 0.991 |
Issue & PR responsiveness
69Moderate
How it's scored
| 44.9/46.8 | Issue resolution — 96% of issues closed |
| 23.7/38.3 | PR acceptance — 44/71 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 44 |
| open_issues | 11 |
| closed_issues | 266 |
| issue_closed_ratio | 0.96 |
| closed_unmerged_prs | 27 |
Ownership & stewardship
57Moderate
How it's scored
| 10/30 | Ownership backing — personal (user) account |
| 0/20 | Verified domain — not applicable to user accounts |
| 15.3/25 | Owner reach — 134 followers of zaeleus |
| 20.3/25 | Track record — 13 public repos, account ~16 yr old |
Inputs used
| followers | 134 |
| owner_type | User |
| is_verified | — |
| owner_login | zaeleus |
| public_repos | 13 |
| account_age_days | 6,010 |
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.
Package maintenance
100Excellent
How it's scored
| 25/25 | Published & resolvable — 8 package(s) on crates |
| 35/35 | Publish recency — latest publish 3 days ago |
| 20/20 | Version history — 104 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | noodles-bam, noodles-bcf, noodles-bed, noodles-bgzf, noodles-core, noodles-cram, noodles-csi, noodles-fasta |
| ecosystems | crates |
| any_deprecated | no |
| min_days_since_publish | 3 |
Engineering Quality
Are baseline engineering and documentation practices in place?
34
Engineering practices
30At risk
How it's scored
| 24/24 | CI workflows — 1 workflow(s) |
| 0/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | yes |
| has_tests | no |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.
Documentation
40At risk
How it's scored
| 30/30 | README |
| 0/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 10/10 | Repository description |
| 0/10 | Topics |
| 0/10 | Wiki |
Inputs used
| topics | — |
| has_wiki | no |
| homepage | — |
| has_readme | yes |
| has_docs_dir | no |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
41
Security posture
41At risk
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0/2.5 | CI-Tests — no data |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 1.5/2.5 | Contributors — project has 2 contributing companies or organizations -- score normalized to 6 |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 8 issue activity found in the last 90 days -- score normalized to 10 |
| 0/5 | Packaging — no data |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 15 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 3 |
| scorecard_aggregate | 4.1 |
Excluded from scoring (no data or not applicable): ci_tests, packaging, signed_releases. Remaining weights renormalized.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
26
Agent context & guidance
1Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — no data |
Inputs used
| has_llms_txt | no |
| legible_history_share | — |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
Verify loop (build / test / typecheck)
13Critical
How it's scored
| 0/18 | One-command bootstrap |
| 0/22 | Automated tests |
| 0/11 | Lint / format config |
| 11/11 | Static type checking — Rust (statically typed) |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no data |
| 0/8 | Automated maintenance — no data |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | no |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | yes |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | — |
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.
Code legibility for models
100Excellent
How it's scored
| 45/45 | Type-checkable code — Rust (statically typed) |
| 55/55 | Manageable file sizes — 0/1,428 source files over 60KB |
Inputs used
| primary_language | Rust |
| largest_source_bytes | 43,838 |
| source_files_sampled | 1,428 |
| oversized_source_files | 0 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples, sample, samples |
Inputs used
| example_dirs | examples, sample, samples |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
711GitHub stars
23contributors
778commits, last 12 months
2days since last push
0releases
1bus factor
11open issues
crates.iopackage ecosystems
More detail
OpenSSF Scorecard 4.1 / 10
4.1aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| n/a | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 6 | Contributors | project has 2 contributing companies or organizations -- score normalized to 6 |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 8 issue activity found in the last 90 days -- score normalized to 10 |
| n/a | Packaging | packaging workflow not detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Direct dependencies 154
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| crates.io | bstr | — | noodles-bam/Cargo.toml |
| crates.io | futures | — | noodles-bam/Cargo.toml |
| crates.io | indexmap | — | noodles-bam/Cargo.toml |
| crates.io | memchr | — | noodles-bam/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-bam/Cargo.toml |
| crates.io | tokio | — | noodles-bam/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-bam/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-bam/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-bam/Cargo.toml |
| crates.io | noodles-sam | 0.86.0 | noodles-bam/Cargo.toml |
| crates.io | indexmap | — | noodles-bcf/Cargo.toml |
| crates.io | memchr | — | noodles-bcf/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-bcf/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-bcf/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-bcf/Cargo.toml |
| crates.io | noodles-vcf | 0.89.0 | noodles-bcf/Cargo.toml |
| crates.io | futures | — | noodles-bcf/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-bcf/Cargo.toml |
| crates.io | tokio | — | noodles-bcf/Cargo.toml |
| crates.io | bstr | — | noodles-bed/Cargo.toml |
| crates.io | lexical-core | — | noodles-bed/Cargo.toml |
| crates.io | memchr | — | noodles-bed/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-bed/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-bed/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-bed/Cargo.toml |
| crates.io | noodles-tabix | 0.63.0 | noodles-bed/Cargo.toml |
| crates.io | bytes | — | noodles-bgzf/Cargo.toml |
| crates.io | crossbeam-channel | 0.5.6 | noodles-bgzf/Cargo.toml |
| crates.io | zlib-rs | 0.6.3 | noodles-bgzf/Cargo.toml |
| crates.io | futures | — | noodles-bgzf/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-bgzf/Cargo.toml |
| crates.io | tokio | — | noodles-bgzf/Cargo.toml |
| crates.io | tokio-util | 0.7.0 | noodles-bgzf/Cargo.toml |
| crates.io | libdeflater | — | noodles-bgzf/Cargo.toml |
| crates.io | rayon | 1.12.0 | noodles-bgzf/Cargo.toml |
| crates.io | bstr | — | noodles-core/Cargo.toml |
| crates.io | bitflags | — | noodles-cram/Cargo.toml |
| crates.io | bstr | — | noodles-cram/Cargo.toml |
| crates.io | bzip2 | 0.6.0 | noodles-cram/Cargo.toml |
| crates.io | flate2 | — | noodles-cram/Cargo.toml |
| crates.io | indexmap | — | noodles-cram/Cargo.toml |
| crates.io | lexical-core | — | noodles-cram/Cargo.toml |
| crates.io | lzma-rust2 | 0.16.1 | noodles-cram/Cargo.toml |
| crates.io | md-5 | 0.11.0 | noodles-cram/Cargo.toml |
| crates.io | noodles-bam | 0.91.0 | noodles-cram/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-cram/Cargo.toml |
| crates.io | noodles-fasta | 0.63.0 | noodles-cram/Cargo.toml |
| crates.io | noodles-sam | 0.86.0 | noodles-cram/Cargo.toml |
| crates.io | async-compression | 0.4.0 | noodles-cram/Cargo.toml |
| crates.io | futures | — | noodles-cram/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-cram/Cargo.toml |
| crates.io | tokio | — | noodles-cram/Cargo.toml |
| crates.io | libdeflater | — | noodles-cram/Cargo.toml |
| crates.io | bit-vec | 0.9.0 | noodles-csi/Cargo.toml |
| crates.io | bstr | — | noodles-csi/Cargo.toml |
| crates.io | futures | — | noodles-csi/Cargo.toml |
| crates.io | indexmap | — | noodles-csi/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-csi/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-csi/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-csi/Cargo.toml |
| crates.io | tokio | — | noodles-csi/Cargo.toml |
| crates.io | bstr | — | noodles-fasta/Cargo.toml |
| crates.io | memchr | — | noodles-fasta/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-fasta/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-fasta/Cargo.toml |
| crates.io | tokio | — | noodles-fasta/Cargo.toml |
| crates.io | bstr | — | noodles-fastq/Cargo.toml |
| crates.io | memchr | — | noodles-fastq/Cargo.toml |
| crates.io | futures | — | noodles-fastq/Cargo.toml |
| crates.io | tokio | — | noodles-fastq/Cargo.toml |
| crates.io | bstr | — | noodles-gff/Cargo.toml |
| crates.io | indexmap | — | noodles-gff/Cargo.toml |
| crates.io | lexical-core | — | noodles-gff/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-gff/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-gff/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-gff/Cargo.toml |
| crates.io | percent-encoding | — | noodles-gff/Cargo.toml |
| crates.io | futures | — | noodles-gff/Cargo.toml |
| crates.io | tokio | — | noodles-gff/Cargo.toml |
| crates.io | bstr | — | noodles-gtf/Cargo.toml |
| crates.io | indexmap | — | noodles-gtf/Cargo.toml |
| crates.io | lexical-core | — | noodles-gtf/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-gtf/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-gtf/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-gtf/Cargo.toml |
| crates.io | noodles-gff | 0.58.0 | noodles-gtf/Cargo.toml |
| crates.io | base64 | 0.22.0 | noodles-htsget/Cargo.toml |
| crates.io | bytes | — | noodles-htsget/Cargo.toml |
| crates.io | futures | — | noodles-htsget/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-htsget/Cargo.toml |
| crates.io | reqwest | — | noodles-htsget/Cargo.toml |
| crates.io | serde | — | noodles-htsget/Cargo.toml |
| crates.io | url | — | noodles-htsget/Cargo.toml |
| crates.io | bytes | — | noodles-refget/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-refget/Cargo.toml |
| crates.io | reqwest | — | noodles-refget/Cargo.toml |
| crates.io | serde | — | noodles-refget/Cargo.toml |
| crates.io | url | — | noodles-refget/Cargo.toml |
| crates.io | bitflags | — | noodles-sam/Cargo.toml |
| crates.io | bstr | — | noodles-sam/Cargo.toml |
| crates.io | indexmap | — | noodles-sam/Cargo.toml |
| crates.io | lexical-core | — | noodles-sam/Cargo.toml |
| crates.io | memchr | — | noodles-sam/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-sam/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-sam/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-sam/Cargo.toml |
| crates.io | futures | — | noodles-sam/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-sam/Cargo.toml |
| crates.io | tokio | — | noodles-sam/Cargo.toml |
| crates.io | bstr | — | noodles-tabix/Cargo.toml |
| crates.io | indexmap | — | noodles-tabix/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-tabix/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-tabix/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-tabix/Cargo.toml |
| crates.io | tokio | — | noodles-tabix/Cargo.toml |
| crates.io | bstr | — | noodles-util/Cargo.toml |
| crates.io | flate2 | — | noodles-util/Cargo.toml |
| crates.io | noodles-bam | 0.91.0 | noodles-util/Cargo.toml |
| crates.io | noodles-bcf | 0.87.0 | noodles-util/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-util/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-util/Cargo.toml |
| crates.io | noodles-cram | 0.95.0 | noodles-util/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-util/Cargo.toml |
| crates.io | noodles-fasta | 0.63.0 | noodles-util/Cargo.toml |
| crates.io | noodles-sam | 0.86.0 | noodles-util/Cargo.toml |
| crates.io | noodles-vcf | 0.89.0 | noodles-util/Cargo.toml |
| crates.io | futures | — | noodles-util/Cargo.toml |
| crates.io | tokio | — | noodles-util/Cargo.toml |
| crates.io | indexmap | — | noodles-vcf/Cargo.toml |
| crates.io | memchr | — | noodles-vcf/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles-vcf/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles-vcf/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles-vcf/Cargo.toml |
| crates.io | noodles-tabix | 0.63.0 | noodles-vcf/Cargo.toml |
| crates.io | percent-encoding | — | noodles-vcf/Cargo.toml |
| crates.io | futures | — | noodles-vcf/Cargo.toml |
| crates.io | pin-project-lite | — | noodles-vcf/Cargo.toml |
| crates.io | tokio | — | noodles-vcf/Cargo.toml |
| crates.io | noodles-bam | 0.91.0 | noodles/Cargo.toml |
| crates.io | noodles-bcf | 0.87.0 | noodles/Cargo.toml |
| crates.io | noodles-bed | 0.35.0 | noodles/Cargo.toml |
| crates.io | noodles-bgzf | 0.48.0 | noodles/Cargo.toml |
| crates.io | noodles-core | 0.20.0 | noodles/Cargo.toml |
| crates.io | noodles-cram | 0.95.0 | noodles/Cargo.toml |
| crates.io | noodles-csi | 0.57.0 | noodles/Cargo.toml |
| crates.io | noodles-fasta | 0.63.0 | noodles/Cargo.toml |
| crates.io | noodles-fastq | 0.23.0 | noodles/Cargo.toml |
| crates.io | noodles-gff | 0.58.0 | noodles/Cargo.toml |
| crates.io | noodles-gtf | 0.53.0 | noodles/Cargo.toml |
| crates.io | noodles-htsget | 0.11.0 | noodles/Cargo.toml |
| crates.io | noodles-refget | 0.10.0 | noodles/Cargo.toml |
| crates.io | noodles-sam | 0.86.0 | noodles/Cargo.toml |
| crates.io | noodles-tabix | 0.63.0 | noodles/Cargo.toml |
| crates.io | noodles-vcf | 0.89.0 | noodles/Cargo.toml |
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"details": [
{
"code": "no_releases",
"params": {}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "unverified",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": "no_commit_sample",
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": null,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "maintenance record not established from the collected data",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_unverified",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 69,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "good",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 70,
"inputs": {
"forks": 83,
"stars": 711,
"watchers": 21,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "711 stars",
"points": 46.3,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 711
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "83 forks",
"points": 16,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 83
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "21 watchers",
"points": 7.2,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 21
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
},
{
"key": "ecosystem_adoption",
"band": "excellent",
"name": "Ecosystem adoption (downloads)",
"note": "Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"registry_dependents"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 94,
"inputs": {
"packages": [
"noodles-bam",
"noodles-bcf",
"noodles-bed",
"noodles-bgzf",
"noodles-core",
"noodles-cram",
"noodles-csi",
"noodles-fasta"
],
"dependents": null,
"ecosystems": "crates",
"total_downloads": 3985459,
"monthly_downloads": 416070
},
"components": [
{
"key": "monthly_downloads",
"name": "Monthly downloads",
"detail": "416,070 downloads/month across crates",
"points": 74.9,
"status": "partial",
"details": [
{
"code": "downloads_monthly",
"params": {
"count": 416070,
"ecosystems": "crates"
}
}
],
"max_points": 80
},
{
"key": "registry_dependents",
"name": "Registry dependents",
"detail": "not reported by this ecosystem",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_reported_by_this_ecosystem",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 60,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "critical",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 29,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 23,
"top_contributor_share": 0.991
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 99% of commits",
"points": 0.2,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 99
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "23 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 23
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 2 contributing companies or organizations -- score normalized to 6",
"points": 6,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 69,
"inputs": {
"merged_prs": 44,
"open_issues": 11,
"closed_issues": 266,
"issue_closed_ratio": 0.96,
"closed_unmerged_prs": 27
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "96% of issues closed",
"points": 44.9,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 96
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "44/71 decided PRs merged",
"points": 23.7,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 44,
"decided": 71
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"verified_domain"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 57,
"inputs": {
"followers": 134,
"owner_type": "User",
"is_verified": null,
"owner_login": "zaeleus",
"public_repos": 13,
"account_age_days": 6010
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "personal (user) account",
"points": 10,
"status": "partial",
"details": [
{
"code": "owner_personal",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": "not applicable to user accounts",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_applicable_to_user_accounts",
"params": {}
}
],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "134 followers of zaeleus",
"points": 15.3,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 134,
"login": "zaeleus"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "13 public repos, account ~16 yr old",
"points": 20.3,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 13
}
},
{
"code": "account_age_years",
"params": {
"years": 16
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"noodles-bam",
"noodles-bcf",
"noodles-bed",
"noodles-bgzf",
"noodles-core",
"noodles-cram",
"noodles-csi",
"noodles-fasta"
],
"ecosystems": "crates",
"any_deprecated": false,
"min_days_since_publish": 3
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "8 package(s) on crates",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 8,
"ecosystems": "crates"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 3 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 3
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "104 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 104
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "at_risk",
"name": "Engineering Quality",
"value": 34,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "at_risk",
"name": "Engineering practices",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_ci_tests"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 30,
"inputs": {
"has_ci": true,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "1 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 1
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "at_risk",
"name": "Documentation",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"topics": [],
"has_wiki": false,
"homepage": null,
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 41,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): CI-Tests, Packaging, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"ci_tests",
"packaging",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 41,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 15,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 3,
"scorecard_aggregate": 4.1
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 2 contributing companies or organizations -- score normalized to 6",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 8 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 8
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 26,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"legible_commit_history"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_llms_txt": false,
"legible_history_share": null,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
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],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [],
"report_type": "repository",
"generated_at": "2026-07-14T02:47:24.572594Z",
"schema_version": "0.9.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/z/zaeleus/noodles.svg",
"full_name": "zaeleus/noodles",
"license_state": "standard",
"license_spdx": "MIT"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.9.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — crates.io.