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#cancer-genomics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

9 records
Tagged “cancer-genomics”Ranked by health index
Maven
96Exceptionalhealth index
cBioPortal/cbioportal
cBioPortal for Cancer Genomics
Java★ 1,038Sep 13, 2026
AGPL-3.0Sep 13, 2026 · metrics 2.10.0
npm · PyPI
89Excellenthealth index
genome-spy/genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
JavaScript★ 211↓ 2,257/moSep 19, 2026
MITSep 19, 2026 · metrics 2.10.0
Maven · npm
87Excellenthealth index
cBioPortal/cbioportal-frontend
React Frontend of cBioPortal :tada:
TypeScript · JavaScript★ 150Sep 12, 2026
AGPL-3.0Sep 12, 2026 · metrics 2.10.0
Maven
78Goodhealth index
genome-nexus/genome-nexus
Backend server for Genome Nexus
Java★ 46Sep 11, 2026
MITSep 11, 2026 · metrics 2.10.0
PyPI
73Goodhealth index
SigProfilerSuite/SigProfilerExtractor
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Python★ 188↓ 1,971/moOct 20, 2026
BSD-2-ClauseOct 20, 2026 · metrics 2.10.0
PyPI
71Goodhealth index
sigven/pcgr
Personal Cancer Genome Reporter (PCGR)
R · Python★ 283Sep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
PyPI
62Moderatehealth index
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
C++★ 538Oct 21, 2026
BSD-3-ClauseOct 21, 2026 · metrics 2.10.0
—
60Moderatehealth index
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Nim · HTML★ 334Sep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
npm
20At Riskhealth index
genome-nexus/genome-nexus-cli
💻 Command line interface for Genome Nexus 🧬
TypeScript★ 0↓ 65/moOct 18, 2026
No licenseOct 18, 2026 · metrics 2.10.0