MDAnalysis/mdanalysisMDAnalysis is a Python library to analyze molecular dynamics simulations.
Python★ 1,610↓ 219.6K/moJul 21, 2026
janosh/mattervizInteractive browser visualizations for materials science: crystal structures/molecules, trajectories, convex hulls, phase diagrams, Fermi surfaces, bands+DOS, Brillouin zones, etc.
TypeScript · Svelte★ 351↓ 4,556/moJul 15, 2026
chemprop/chempropMessage Passing Neural Networks for Molecule Property Prediction
Python★ 2,401↓ 117.7K/moJul 16, 2026
npm · PyPI70Goodhealth index
mat3ra/madeMaterials Design library. A JavaScript/TypeScript and Python library allowing for the creation and manipulation of material structures from atoms up.
Python · TypeScript★ 7↓ 3,820/moJul 15, 2026
PyPI · RubyGems69Moderatehealth index
theochemui/eoneOn v2 and beyond
C++ · Python★ 17↓ 112/moJul 17, 2026
PyPI68Moderatehealth index
jepegit/cellpyextract and tweak data from electrochemical tests of cells
Python★ 104↓ 2,072/moJul 18, 2026
Go · npm62Moderatehealth index
julienpoirou/hugo-mod-katexHugo module to render LaTeX math and chemistry formulas with KaTeX, mhchem support, fast client-side rendering, and auto-detection.
JavaScript · HTML★ 0Jul 17, 2026
PyPI61Moderatehealth index
adc-connect/adccadcc: Seamlessly connect your program to ADC
Python · C++★ 41↓ 351/moJul 19, 2026
crates.io61Moderatehealth index
kent-tokyo/chematicA pure-Rust cheminformatics library targeting RDKit feature parity — zero C/C++ by default.
Rust★ 17Jul 17, 2026
PyPI60Moderatehealth index
Electrostatics/mmcif_pdbxYet another version of PDBx/mmCIF Python implementation
Python★ 9Jul 15, 2026
npm60Moderatehealth index
TypeScript★ 15Jul 15, 2026
crates.io · PyPI60Moderatehealth index
molcrafts/molrs[WIP] Molcrafts rust kernel
Rust★ 0↓ 76/moJul 15, 2026
PyPI59Moderatehealth index
ryannduma/crystalyse.aiIntelligent Scientific Agent for Materials Design
Python★ 24↓ 237/moJul 17, 2026
PyPI · crates.io57Moderatehealth index
hfooladi/pdbrustA Rust library for parsing PDB (Protein Data Bank) files
Rust★ 20↓ 997/moJul 15, 2026
PyPI53Moderatehealth index
electrostatics/apbsSoftware for biomolecular electrostatics and solvation calculations
C · Python · MATLAB★ 134Jul 17, 2026
PyPI · crates.io52Moderatehealth index
mlund/duelloOsmotic second virial coefficient (𝐵₂) and dissociation constant (𝐾𝑑) for two rigid macromolecules
Rust · Python★ 1↓ 120/moJul 17, 2026
crates.io · npm49At riskhealth index
tkanx/bio-forgeA high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
Rust · TypeScript★ 141Jul 15, 2026
juliocesar-io/nano-protein-viewer-reactReact component for visualizing protein structures with the Mol* framework.
TypeScript★ 8↓ 710/moJul 15, 2026
cheminfo/cif-to-jsonParse X-ray CIF format
JavaScript★ 0↓ 82/moJul 15, 2026
ghost---shadow/vamos-hoseNo repository description published.
JavaScript · Python★ 0↓ 77/moJul 15, 2026
crates.io43At riskhealth index
caltechmsc/dreid-packA high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.
Rust★ 2Jul 17, 2026
ghost---shadow/selfies-jsA pure JavaScript implementation of the SELFIES molecular string representation
JavaScript★ 0↓ 107/moJul 14, 2026
epam/ketcherWeb-based molecule sketcher
TypeScript★ 842↓ 10/moJul 20, 2026
PyPI35At riskhealth index
electrostatics/go2pdbExtract PDB entries annotated with specific GO codes
Python · Jupyter Notebook★ 2↓ 998/moJul 15, 2026
CalebBell/thermoThermodynamics and Phase Equilibrium component of Chemical Engineering Design Library (ChEDL)
Python★ 765Jul 20, 2026
npm28Criticalhealth index
osofem/moleculesGet atoms from a molucular formula
TypeScript · JavaScript★ 2↓ 44/moJul 14, 2026
npm26Criticalhealth index
lukasturcani/mol-drawA lightweight, 3D molecular viewer for JavaScript and PureScript applications.
PureScript · JavaScript★ 23↓ 208/moJul 14, 2026