PyPI
cogent3/cogent3
Comparative Genomics Toolkit 3
BSD-3-ClauseOct 21, 2026 · metrics 2.10.0
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Catalogue tag
#phylogenetics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
13 records
PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
PyPI
JLSteenwyk/PhyKIT
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
MITSep 12, 2026 · metrics 2.10.0
PyPI
AADavin/Phylustrator
A lightweight tree plotter library
MITOct 20, 2026 · metrics 2.10.0
PyPI
AADavin/zombi2
A Python library for simulating the evolution of species, genomes, sequences and traits
MITSep 18, 2026 · metrics 2.10.0
PyPI
stajichlab/Phyling
Phyling: phylogenetic inference from annotated genomes
MITSep 19, 2026 · metrics 2.10.0
npm
warelab/tbrowse
gene tree React component
MITSep 19, 2026 · metrics 2.10.0
PyPI
JLSteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
MITSep 10, 2026 · metrics 2.10.0
PyPI
niemasd/TreeSwift
TreeSwift: Fast tree module for Python 3
GPL-3.0Sep 15, 2026 · metrics 2.10.0
PyPI
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
GPL-3.0Sep 14, 2026 · metrics 2.10.0
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lczech/genesis
A library for working with phylogenetic and population genetic data.
GPL-3.0Oct 21, 2026 · metrics 2.10.0
PyPI · npm · crates.io
holmrenser/nj.rs
Neighbor Joining in rust, with python and JS/WASM wrappers
MITOct 18, 2026 · metrics 2.10.0
npm
clockor2/phylojs
Javascript library for manipulating phylogenetic trees
GPL-3.0Sep 9, 2026 · metrics 2.10.0