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#phylogenomics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

5 records
Tagged “phylogenomics”Ranked by health index
PyPI
75Goodhealth index
JLSteenwyk/PhyKIT
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Python★ 91↓ 7,664/moSep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
PyPI
71Goodhealth index
AADavin/zombi2
A Python library for simulating the evolution of species, genomes, sequences and traits
Python★ 3↓ 2,072/moSep 18, 2026
MITSep 18, 2026 · metrics 2.10.0
PyPI
62Moderatehealth index
stajichlab/Phyling
Phyling: phylogenetic inference from annotated genomes
Python★ 33Sep 19, 2026
MITSep 19, 2026 · metrics 2.10.0
PyPI
59Moderatehealth index
JLSteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Python★ 32↓ 221/moSep 10, 2026
MITSep 10, 2026 · metrics 2.10.0
PyPI
45Weakhealth index
edgardomortiz/Captus
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Python★ 45Sep 14, 2026
GPL-3.0Sep 14, 2026 · metrics 2.10.0