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#protein-data-bank

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

9 records
Tagged “protein-data-bank”Ranked by health index
PyPI
72Goodhealth index
bradyajohnston/molecularnodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Python★ 1,317Jul 15, 2026
GPL-3.0Jul 15, 2026 · metrics 1.13.0
PyPI
67Moderatehealth index
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1↓ 3,758/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
63Moderatehealth index
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
61Moderatehealth index
elkins-lab/synth-saxs
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
Python★ 1↓ 3,502/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
60Moderatehealth index
elkins-lab/diff-biophys
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
Python★ 0Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
52Moderatehealth index
elkins-lab/synth-cryo-em
Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
Python · Jupyter Notebook★ 2Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
PyPI · npm
50Moderatehealth index
N283T/pdb-mine-builder
Build a Mine-schema database from PDB data. Load PDBj structural biology data into PostgreSQL with RDKit chemical search support.
Python★ 0↓ 1,096/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
50Moderatehealth index
pdbeurope/investigations
This application is designed to create mmcif files from facilities data.
Python★ 6↓ 1,071/moJul 15, 2026
No licenseJul 15, 2026 · metrics 1.13.0
PyPI
49At riskhealth index
PDBEurope/mmcif-gen
This application is designed to create mmcif files from facilities data.
Python★ 6Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0