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#scrna-seq

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

6 records
Tagged “scrna-seq”Ranked by health index
PyPI
95Exceptionalhealth index
scverse/pertpy
Single-cell perturbation analysis
Python★ 337↓ 7,588/moAug 24, 2026
MITAug 24, 2026 · metrics 2.10.0
PyPI
81Excellenthealth index
scverse/muon
muon is a multimodal omics Python framework
Python★ 277Jul 27, 2026
BSD-3-ClauseJul 27, 2026 · metrics 2.10.0
crates.io · npm
80Excellenthealth index
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Rust★ 918Jul 16, 2026
BSD-3-ClauseJul 16, 2026 · metrics 2.10.0
PyPI
50Moderatehealth index
jamesjcai/scGEAToolbox
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
MATLAB★ 30Jul 20, 2026
MITJul 20, 2026 · metrics 2.10.0
PyPI · npm
36Weakhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 2.10.0
PyPI
35Weakhealth index
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
Jupyter Notebook★ 89Jul 26, 2026
MITJul 26, 2026 · metrics 2.10.0