PyPI
gyorilab/mira
MIRA: machine-assisted modeling of dynamical systems
BSD-2-ClauseSep 29, 2026 · metrics 2.10.0
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Catalogue tag
#systems-biology
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
9 records
PyPI
fides-dev/fides
Trust Region Optimization in Python
Custom licenseOct 24, 2026 · metrics 2.10.0
npm
hetalang/heta-compiler
Software tool for the compilation of Heta-based QSP modeling platform
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI
marcorusc/mcp-biomodelling-servers
A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.
No licenseOct 12, 2026 · metrics 2.10.0
PyPI · crates.io
sybila/biodivine-aeon-py
No repository description published.
MITSep 12, 2026 · metrics 2.10.0
PyPI
gioodm/wasp-proteins-annotation
Python command-line software for whole-proteomes annotation based on structural homology.
MITSep 9, 2026 · metrics 2.10.0
PyPI
SBRG/ssbio
A Python framework for structural systems biology
MITSep 9, 2026 · metrics 2.10.0
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lingfeiwang/findr
Fast Inference of Networks from Directed Regulations
AGPL-3.0Oct 18, 2026 · metrics 2.10.0
PyPI
chiffa/BioFlow
Information Flow Analysis toolkit for biological networks
Custom licenseSep 9, 2026 · metrics 2.10.0