Public record
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-09-21 03:30 UTC

GMOD / tabix-js

Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

TypeScriptMIT★ 14 stars⑂ 4 forkssince Aug 2018View on GitHub ↗
KindLibraryhow this is determined

GMOD/tabix-js holds a health index of 86 out of 100, placing it in the Excellent band. It scores highest on Vitality (89/100) and lowest on Community & Adoption (54/100). It was last updated 3 days ago. A single contributor accounts for most of its recent work.

86
overall / 100
Excellent

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

86
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 72 is calibrated to 86 on the published index scale (record calibration 2026-08-02).

Ownership

Generic Model Organism Database ProjectOrganization
69 followers128 public repossince Jul 2010

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
npm@gmod/tabix3.8.230,8808630 days agobionodebiojsgenomics

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

89Excellent · 21% of overall

Development activity

82Excellent
How it's scored
36/36Push recency — last push 3 days ago
18/36Commit cadence — 26/52 weeks with commits
18/18Commit volume — 195 commits in the last year
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year195
human_commit_share1
days_since_last_push3
active_weeks_last_year26

Release discipline

100Exceptional
How it's scored
27/27Ships releases — 2 releases published
36/36Release recency — latest release 30 days ago
27/27Release cadence — a release every ~9.1 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count2
latest_release_tagv3.8.2
releases_from_tagsno
days_since_latest_release30
mean_days_between_releases9.1
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

54Moderate · 17% of overall

Popularity & adoption

28At Risk
How it's scored
18.1/60Stars — 14 stars
4/25Forks — 4 forks
5.8/15Watchers — 12 watchers
Inputs used
forks4
stars14
watchers12
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

70Good
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (MIT)
18/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges2
has_contributingyes
has_issue_templateno
has_code_of_conductno
readme_badge_servicesshields.io
has_pull_request_templateno

Ecosystem adoption (downloads)

75Good
How it's scored
59.9/80Monthly downloads — 30,880 downloads/month across npm
0/20Registry dependents — not reported by this ecosystem
Inputs used
packages@gmod/tabix
dependents—
ecosystemsnpm
total_downloads—
monthly_downloads30,880
unverified_packages_excluded—
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

61Moderate · 23% of overall

Maintainer resilience (bus factor)

29At Risk
How it's scored
9/54Bus factor — 1 contributor(s) cover half of all commits
5/22.5Commit distribution — top contributor authored 78% of commits
5.4/13.5Contributor breadth — 4 contributors
10/10OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations
Inputs used
bus_factor1
contributors_sampled4
top_contributor_share0.778

Issue & PR responsiveness

61Moderate
How it's scored
42/42Issue resolution — 100% of issues closed
11.2/30PR acceptance — 42/112 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs42
open_issues0
closed_issues44
prs_merged_7d0
prs_decided_7d0
prs_merged_30d0
prs_decided_30d0
issue_closed_ratio1
closed_unmerged_prs70
first_time_authors_30d0
first_time_prs_merged_30d0
first_time_prs_decided_30d0
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.

Ownership & stewardship

68Good
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
13.3/25Owner reach — 69 followers of GMOD
25/25Track record — 128 public repos, account ~16 yr old
Inputs used
followers69
owner_typeOrganization
is_verifiedno
owner_loginGMOD
public_repos128
account_age_days5,903

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable — 1 package(s) on npm
35/35Publish recency — latest publish 30 days ago
20/20Version history — 86 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packages@gmod/tabix
ecosystemsnpm
any_deprecatedno
min_days_since_publish30

Engineering Quality

Are baseline engineering and documentation practices in place?

83Excellent · 19% of overall

Engineering practices

88Excellent
How it's scored
24/24CI workflows — 1 workflow(s)
24/24Tests present
16/16Linter config — eslint.config.mjs
0/9.6Pre-commit hooks
6.4/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — no data
Inputs used
has_ciyes
has_testsyes
has_editorconfigyes
has_linter_configyes
has_precommit_configno
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.

Documentation

75Good
How it's scored
30/30README
25/25Documentation directory
0/15Documentation / homepage site
10/10Repository description
0/10Topics
10/10Wiki
Inputs used
topics—
has_wikiyes
homepage—
docs_site—
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

66Good · 16% of overall

Security posture

57Moderate
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — no data
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 4 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
5/5Pinned-Dependencies — all dependencies are pinned
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — no data
6.8/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 14 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate5.7
Excluded from scoring (no data or not applicable): CI-Tests, Signed-Releases. Remaining weights renormalized.

Dependency advisories

100Exceptional
How it's scored
35/35Direct dependencies free of known advisories — no direct dependency carries a known advisory
25/25Indirect dependencies free of known advisories — no indirect dependency carries a known advisory
0/40No advisories left outstanding — no advisory carries a publication date
Inputs used
sourceosv
advisories0
affected_packages0
assessed_packages5
unassessed_packages0
affected_by_severitynone
direct_affected_packages0
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the npm:@gmod/tabix@3.8.2 runtime dependency closure — what installing the published package pulls in — 5 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

85Excellent · 4% of overall

Agent context & guidance

85Excellent
How it's scored
45/45Agent instructions — CLAUDE.md
0/15Machine-readable docs (llms.txt)
40/40Legible commit history — 83 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
llms_txt_url—
legible_history_share0.83
agent_instruction_filesCLAUDE.md
agent_instruction_max_bytes2,049

Verify loop (build / test / typecheck)

74Good
How it's scored
0/18One-command bootstrap
22/22Automated tests
11/11Lint / format config — eslint.config.mjs
11/11Static type checking — tsconfig.json
10/10Reproducible environment — lockfile
10/10Demonstrated agent practice — 63 of the last 100 commits agent-authored or agent-credited
0/8Automated maintenance — no automated dependency updates observed
10/10OpenSSF Scorecard: Pinned-Dependencies — all dependencies are pinned
Inputs used
has_nixno
has_testsyes
lockfilespnpm-lock.yaml
has_dockerfileno
typed_languageyes
bootstrap_files—
has_devcontainerno
has_linter_configyes
typecheck_configstsconfig.json
agent_commit_share0.63
toolchain_manifests—
dependency_bot_commit_share0

Code legibility for models

100Exceptional
How it's scored
45/45Type-checkable code — TypeScript (statically typed)
55/55Manageable file sizes — 0/25 source files over 60KB
Inputs used
primary_languageTypeScript
largest_source_bytes29,299
source_files_sampled25
oversized_source_files0

Machine-readable interfaces

100Exceptional
How it's scored
0/40API schema (OpenAPI/GraphQL/proto) — not applicable to this kind of software
0/20MCP server — not applicable to this kind of software
40/40Runnable examples — example
Inputs used
example_dirsexample
has_mcp_signalno
api_schema_files—
interfaces_expected_of—
Excluded from scoring (no data or not applicable): API schema (OpenAPI/GraphQL/proto), MCP server. Remaining weights renormalized.

Key facts

14GitHub stars
4contributors
195commits, last 12 months
3days since last push
2releases
1bus factor
0open issues
npmpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

More detail

Star and fork history 0 ★ / 4 ⇿
0Stars
4Forks

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

1223344412018-112021-032023-07

Each point covers 5 days.

OpenSSF Scorecard 5.7 / 10
5.7aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-09-21 03:30 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
n/aCI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
10Contributorsproject has 4 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
10Pinned-Dependenciesall dependencies are pinned
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
9Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities14 existing vulnerabilities detected
Direct dependencies 4
RegistryPackageVersion constraintManifest
npm@gmod/bgzf-filehandle^6.6.0package.json
npm@gmod/shared-read-cache^1.7.2package.json
npm@jbrowse/quick-lru^7.3.5package.json
npmgeneric-filehandle2^2.2.1package.json
All dependencies 335

Full resolved dependency set from the GitHub dependency graph: 4 direct and 331 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
npm@gmod/bgzf-filehandle6.3.2direct
npm@gmod/shared-read-cache1.3.0direct
npm@jbrowse/quick-lru7.3.5direct
npmgeneric-filehandle22.2.1direct
npm@babel/helper-string-parser7.29.7indirect
npm@babel/helper-validator-identifier7.29.7indirect
npm@babel/parser7.29.8indirect
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npm@bcoe/v8-coverage1.0.2indirect
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npm@emnapi/core1.10.0indirect
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npm@emnapi/wasi-threads1.2.1indirect
npm@eslint-community/eslint-utils4.10.1indirect
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npm@eslint/config-array0.23.5indirect
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npm@eslint/core1.2.1indirect
npm@eslint/js10.0.1indirect
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npm@humanfs/node0.16.8indirect
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npm@humanwhocodes/module-importer1.0.1indirect
npm@humanwhocodes/retry0.4.3indirect
npm@jridgewell/gen-mapping0.3.13indirect
npm@jridgewell/resolve-uri3.1.2indirect
npm@jridgewell/source-map0.3.11indirect
npm@jridgewell/sourcemap-codec1.5.5indirect
npm@jridgewell/trace-mapping0.3.31indirect
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npmlightningcss-android-arm641.32.0indirect
npmlightningcss-darwin-arm641.32.0indirect
npmlightningcss-darwin-x641.32.0indirect
npmlightningcss-freebsd-x641.32.0indirect
npmlightningcss-linux-arm-gnueabihf1.32.0indirect
npmlightningcss-linux-arm64-gnu1.32.0indirect
npmlightningcss-linux-arm64-musl1.32.0indirect
npmlightningcss-linux-x64-gnu1.32.0indirect
npmlightningcss-linux-x64-musl1.32.0indirect
npmlightningcss-win32-arm64-msvc1.32.0indirect
npmlightningcss-win32-x64-msvc1.32.0indirect
npmlocate-path5.0.0indirect
npmlocate-path6.0.0indirect
npmlru-cache11.5.2indirect
npmmagic-string0.30.21indirect
npmmagicast0.5.4indirect
npmmake-dir4.0.0indirect
npmmerge-stream2.0.0indirect
npmmime-db1.54.0indirect
npmminimatch10.2.5indirect
npmminimatch10.2.6indirect
npmminimizer-webpack-plugin5.6.1indirect
npmminipass7.1.3indirect
npmms2.1.3indirect
npmnanoid3.3.12indirect
npmnapi-postinstall0.3.4indirect
npmnatural-compare1.4.0indirect
npmneo-async2.6.2indirect
npmnode-releases2.0.51indirect
npmnpm-run-path6.0.0indirect
npmobug2.1.4indirect
npmoptionator0.9.4indirect
npmp-limit2.3.0indirect
npmp-limit3.1.0indirect
npmp-locate4.1.0indirect
npmp-locate5.0.0indirect
npmp-try2.2.0indirect
npmpackage-json-from-dist1.0.1indirect
npmpako-esm22.0.2indirect
npmparse-ms4.0.0indirect
npmpath-exists4.0.0indirect
npmpath-key3.1.1indirect
npmpath-key4.0.0indirect
npmpath-parse1.0.7indirect
npmpath-scurry2.0.2indirect
npmpathe2.0.3indirect
npmpicocolors1.1.1indirect
npmpicomatch4.0.5indirect
npmpkg-dir4.2.0indirect
npmpostcss8.5.15indirect
npmprelude-ls1.2.1indirect
npmprettier3.9.6indirect
npmpretty-ms9.3.0indirect
npmpunycode2.3.1indirect
npmrechoir0.8.0indirect
npmrequire-from-string2.0.2indirect
npmresolve1.22.12indirect
npmresolve-cwd3.0.0indirect
npmresolve-from5.0.0indirect
npmresolve-pkg-maps1.0.0indirect
npmrimraf6.1.3indirect
npmrolldown1.0.0-rc.10indirect
npmschema-utils4.3.3indirect
npmsemver7.8.5indirect
npmshallow-clone3.0.1indirect
npmshebang-command2.0.0indirect
npmshebang-regex3.0.0indirect
npmsiginfo2.0.0indirect
npmsignal-exit4.1.0indirect
npmsource-map0.6.1indirect
npmsource-map-js1.2.1indirect
npmsource-map-support0.5.21indirect
npmstable-hash-x0.2.0indirect
npmstackback0.0.2indirect
npmstd-env4.2.0indirect
npmstrip-final-newline4.0.0indirect
npmsupports-color7.2.0indirect
npmsupports-color8.1.1indirect
npmsupports-preserve-symlinks-flag1.0.0indirect
npmtapable2.3.3indirect
npmterser5.49.0indirect
npmtinybench2.9.0indirect
npmtinyexec1.3.0indirect
npmtinyglobby0.2.17indirect
npmtinyrainbow3.1.1indirect
npmts-api-utils2.5.0indirect
npmtslib2.8.1indirect
npmtype-check0.4.0indirect
npmtypescript6.0.3indirect
npmtypescript-eslint8.65.0indirect
npmuglify-js3.19.3indirect
npmundici-types8.3.0indirect
npmunicorn-magic0.3.0indirect
npmunrs-resolver1.12.2indirect
npmupdate-browserslist-db1.2.3indirect
npmuri-js4.4.1indirect
npmvite8.0.1indirect
npmvitest4.1.10indirect
npmwatchpack2.5.2indirect
npmwebpack5.109.2indirect
npmwebpack-cli7.2.2indirect
npmwebpack-merge6.0.1indirect
npmwebpack-sources3.5.1indirect
npmwhich2.0.2indirect
npmwhy-is-node-running2.3.0indirect
npmwildcard2.0.1indirect
npmword-wrap1.2.5indirect
npmyaml2.9.0indirect
npmyocto-queue0.1.0indirect
npmyoctocolors2.2.0indirect
Dependency advisories 0

Installing npm:@gmod/tabix@3.8.2 pulls in 5 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.

No known advisories affect the assessed dependencies.

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable

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83GMOD/bbi-jsParser for bigwig and bigbed filesExcellent83GMOD/vcf-jsVCF (variant call format) parserExcellent80GMOD/indexedfasta-jsRead FASTA files indexed with .fai indexes. Also supports BGZIP+.gziExcellent78GMOD/gff-nostreamGood77GMOD/generic-filehandle2modernization of the original generic-filehandle, no Buffer polyfill neededGood71GMOD/bed-jsA parser for the BED format including autoSql supportGood

Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.34.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — npm.