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#genomics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

22 records
Tagged “genomics”Ranked by health index
PyPI
77Goodhealth index
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Python★ 5,131Jul 22, 2026
Custom licenseJul 22, 2026 · metrics 1.13.0
Maven
76Goodhealth index
miso-lims/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
Java · JavaScript★ 305Jul 18, 2026
GPL-3.0Jul 18, 2026 · metrics 1.13.0
PyPI · crates.io
71Goodhealth index
genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
Rust · Python★ 554Jul 21, 2026
MITJul 21, 2026 · metrics 1.13.0
npm
67Moderatehealth index
iGVteam/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
JavaScript · HTML★ 728↓ 81.9K/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
67Moderatehealth index
michael-denyer/jamma
JAMMA (Highly-Accelerated Multi-method Mixed-model Association) -- a fast and modern Python and C reimplementation of GEMMA for large-scale GWAS.
Python · C★ 1Jul 20, 2026
GPL-3.0Jul 20, 2026 · metrics 1.13.0
npm · crates.io
66Moderatehealth index
GMOD/bbi-js
Parser for bigwig and bigbed files
TypeScript · JavaScript★ 9↓ 13.7K/moJul 18, 2026
MITJul 18, 2026 · metrics 1.13.0
PyPI
65Moderatehealth index
JLSteenwyk/PhyKIT
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Python★ 88Jul 21, 2026
MITJul 21, 2026 · metrics 1.13.0
npm
64Moderatehealth index
gmod/apollo3
Monorepo for Apollo 3 server-side and client-side (JBrowse 2 plugin) components.
TypeScript★ 15Jul 18, 2026
Apache-2.0Jul 18, 2026 · metrics 1.13.0
PyPI
63Moderatehealth index
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
Cython · Python★ 446Jul 21, 2026
MITJul 21, 2026 · metrics 1.13.0
PyPI · Go
60Moderatehealth index
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Python★ 42Jul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI · npm
58Moderatehealth index
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Python · TypeScript★ 0↓ 0/moJul 14, 2026
Apache-2.0Jul 14, 2026 · metrics 1.13.0
—
57Moderatehealth index
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
Nim · HTML★ 329Jul 21, 2026
MITJul 21, 2026 · metrics 1.13.0
PyPI
57Moderatehealth index
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
Python · HTML★ 435↓ 1,420/moJul 23, 2026
MITJul 23, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
Python★ 31↓ 221/moJul 18, 2026
MITJul 18, 2026 · metrics 1.13.0
crates.io
55Moderatehealth index
ArcInstitute/binseq
A high efficiency binary format for sequencing data
Rust★ 103↓ 2,137/moJul 21, 2026
No licenseJul 21, 2026 · metrics 1.13.0
PyPI
51Moderatehealth index
kmaneesh/biopython-mcp
MCP interface to BioPython
Python★ 2↓ 503/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI · npm
40At riskhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
npm
36At riskhealth index
smartsbio/node-sdk
Official TypeScript/JavaScript SDK for smarts.bio
TypeScript★ 0↓ 73/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
npm
31At riskhealth index
bbglab/muts-needle-plot
A needle plot for mutation data
JavaScript★ 27↓ 113/moJul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
npm
16Criticalhealth index
biojs/generator-biojs-webcomponents
Generate all the boilerplate for your next BioJS tool!
JavaScript★ 10↓ 85/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0