PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
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Catalogue tag
#genomics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
40 records
npm
broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
BSD-3-ClauseJul 31, 2026 · metrics 2.10.0
Maven
miso-lims/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
GPL-3.0Jul 18, 2026 · metrics 2.10.0
PyPI
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
MITAug 17, 2026 · metrics 2.10.0
PyPI
K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 170,000+ scientists worldwide. 158 ready-to-use skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
MITAug 5, 2026 · metrics 2.10.0
PyPI · crates.io
genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
MITJul 21, 2026 · metrics 2.10.0
PyPI
hail-is/hail
Cloud-native genomic dataframes and batch computing
MITAug 10, 2026 · metrics 2.10.0
Maven
gorpipe/gor
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
AGPL-3.0Aug 16, 2026 · metrics 2.10.0
—
EBI-Metagenomics/assembly-analysis-pipeline
MGnify Assembly Analysis Pipeline
Apache-2.0Jul 18, 2026 · metrics 2.10.0
npm
iGVteam/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
MITJul 17, 2026 · metrics 2.10.0
npm · crates.io
GMOD/bbi-js
Parser for bigwig and bigbed files
MITJul 18, 2026 · metrics 2.10.0
PyPI
michael-denyer/jamma
JAMMA (Highly-Accelerated Multi-method Mixed-model Association) -- a fast and modern Python and C reimplementation of GEMMA for large-scale GWAS.
GPL-3.0Jul 20, 2026 · metrics 2.10.0
npm
GMOD/gff-nostream
No repository description published.
MITAug 7, 2026 · metrics 2.10.0
npm
gmod/apollo3
Monorepo for Apollo 3 server-side and client-side (JBrowse 2 plugin) components.
Apache-2.0Jul 18, 2026 · metrics 2.10.0
npm
GMOD/generic-filehandle2
modernization of the original generic-filehandle, no Buffer polyfill needed
No licenseAug 5, 2026 · metrics 2.10.0
PyPI
JLSteenwyk/PhyKIT
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
MITJul 21, 2026 · metrics 2.10.0
PyPI
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
MITJul 21, 2026 · metrics 2.10.0
RubyGems
kojix2/ruby-htslib
HTSlib bindings for Ruby
MITAug 1, 2026 · metrics 2.10.0
PyPI · npm
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Apache-2.0Sep 5, 2026 · metrics 2.10.0
PyPI
kcleal/dysgu
Toolkit for calling structural variants using short or long reads
MITJul 23, 2026 · metrics 2.10.0
RubyGems
kojix2/ruby-minimap2
Powerful long read aligner for Ruby
MITAug 19, 2026 · metrics 2.10.0
PyPI · Go
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Custom licenseJul 15, 2026 · metrics 2.10.0
crates.io
fulcrumgenomics/bgzf
BGZF compression library in Rust
Custom licenseAug 13, 2026 · metrics 2.10.0
crates.io
COMBINE-lab/piscem
Mapping sequencing data to De Bruijn graphs, fast
BSD-3-ClauseAug 22, 2026 · metrics 2.10.0
PyPI
igvteam/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
MITJul 23, 2026 · metrics 2.10.0
PyPI
jlsteenwyk/orthosnap
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
MITJul 18, 2026 · metrics 2.10.0
PyPI
tanaylab/pymisha
Genomic data analysis suite in python
MITAug 25, 2026 · metrics 2.10.0
crates.io
ArcInstitute/binseq
A high efficiency binary format for sequencing data
No licenseJul 21, 2026 · metrics 2.10.0
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TobyBaril/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Custom licenseAug 19, 2026 · metrics 2.10.0
—
brentp/somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MITJul 21, 2026 · metrics 2.10.0