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#genomics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

67 records
Tagged “genomics”Ranked by health index
npm · PyPI
95Exceptionalhealth index
galaxyproject/galaxy
Data intensive science for everyone.
Python · TypeScript · Vue★ 1,872↓ 245/moOct 18, 2026
Custom licenseOct 18, 2026 · metrics 2.10.0
Maven
91Excellenthealth index
miso-lims/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
Java · JavaScript★ 310Sep 10, 2026
GPL-3.0Sep 10, 2026 · metrics 2.10.0
PyPI
90Excellenthealth index
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Python★ 5,176↓ 6.7M/moAug 28, 2026
Custom licenseAug 28, 2026 · metrics 2.10.0
PyPI
89Excellenthealth index
nanoporetech/dorado
Oxford Nanopore's Basecaller
C++★ 871Sep 8, 2026
Custom licenseSep 8, 2026 · metrics 2.10.0
PyPI
88Excellenthealth index
K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
Python★ 45.2KSep 16, 2026
MITSep 16, 2026 · metrics 2.10.0
npm
88Excellenthealth index
broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
Python · WDL · R★ 207Sep 15, 2026
BSD-3-ClauseSep 15, 2026 · metrics 2.10.0
PyPI
88Excellenthealth index
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
Python★ 197Oct 19, 2026
MITOct 19, 2026 · metrics 2.10.0
PyPI · crates.io
88Excellenthealth index
genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
Rust · Python★ 630↓ 1,780/moSep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
npm
86Excellenthealth index
GMOD/tabix-js
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
TypeScript★ 14↓ 30.9K/moSep 21, 2026
MITSep 21, 2026 · metrics 2.10.0
PyPI
86Excellenthealth index
hail-is/hail
Cloud-native genomic dataframes and batch computing
Python · Scala★ 1,072Sep 17, 2026
MITSep 17, 2026 · metrics 2.10.0
npm · crates.io
83Excellenthealth index
GMOD/bbi-js
Parser for bigwig and bigbed files
TypeScript★ 9↓ 25.1K/moSep 10, 2026
MITSep 10, 2026 · metrics 2.10.0
npm
83Excellenthealth index
GMOD/vcf-js
VCF (variant call format) parser
TypeScript★ 26↓ 30.3K/moSep 15, 2026
MITSep 15, 2026 · metrics 2.10.0
PyPI
83Excellenthealth index
klebgenomics/Kaptive
The tool for in silico serotyping
Python★ 65↓ 820/moSep 14, 2026
GPL-3.0Sep 14, 2026 · metrics 2.10.0
PyPI
83Excellenthealth index
michael-denyer/jamma
JAMMA (Highly-Accelerated Multi-method Mixed-model Association) -- a fast and modern Python and C reimplementation of GEMMA for large-scale GWAS.
Python★ 2↓ 2,949/moSep 12, 2026
GPL-3.0Sep 12, 2026 · metrics 2.10.0
Maven
81Excellenthealth index
gorpipe/gor
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Java · Scala★ 48Sep 18, 2026
AGPL-3.0Sep 18, 2026 · metrics 2.10.0
npm
80Excellenthealth index
GMOD/indexedfasta-js
Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi
TypeScript★ 11↓ 23.4K/moSep 18, 2026
MITSep 18, 2026 · metrics 2.10.0
npm
80Excellenthealth index
igvteam/igv.js
Embeddable genomic visualization component based on the Integrative Genomics Viewer
JavaScript · HTML★ 733↓ 70.2K/moSep 9, 2026
MITSep 9, 2026 · metrics 2.10.0
npm
78Goodhealth index
GMOD/gff-nostream
No repository description published.
TypeScript★ 2↓ 18.6K/moSep 17, 2026
MITSep 17, 2026 · metrics 2.10.0
npm
77Goodhealth index
GMOD/Apollo3
Monorepo for Apollo 3 server-side and client-side (JBrowse 2 plugin) components.
TypeScript★ 16↓ 1,065/moSep 11, 2026
Apache-2.0Sep 11, 2026 · metrics 2.10.0
npm
77Goodhealth index
GMOD/generic-filehandle2
modernization of the original generic-filehandle, no Buffer polyfill needed
TypeScript★ 0↓ 32.7K/moSep 17, 2026
No licenseSep 17, 2026 · metrics 2.10.0
PyPI
75Goodhealth index
JLSteenwyk/PhyKIT
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Python★ 91↓ 7,664/moSep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
PyPI
73Goodhealth index
brentp/cyvcf2
cython + htslib == fast VCF and BCF processing
Cython · Python★ 449Sep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
PyPI
73Goodhealth index
ga4gh/va-spec-python
GA4GH Variation Annotation Python Implementation
Python★ 2↓ 3,523/moOct 5, 2026
Apache-2.0Oct 5, 2026 · metrics 2.10.0
npm
71Goodhealth index
GMOD/bed-js
A parser for the BED format including autoSql support
TypeScript★ 5↓ 20.6K/moSep 18, 2026
MITSep 18, 2026 · metrics 2.10.0
PyPI
71Goodhealth index
TimoLassmann/kalign
A fast multiple sequence alignment program.
C · Python★ 162↓ 9,617/moSep 19, 2026
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI · Go
71Goodhealth index
the-omics-os/lobster
The self-evolving agentic framework for bioinformatics
Python★ 45↓ 765/moSep 8, 2026
Custom licenseSep 8, 2026 · metrics 2.10.0
npm
69Goodhealth index
GMOD/nclist-js
Read JBrowse v1 nested containment list feature stores from modern JS
TypeScript★ 0↓ 18.1K/moSep 21, 2026
MITSep 21, 2026 · metrics 2.10.0
npm
67Goodhealth index
GMOD/faidx-js
Index a FASTA file similar to `samtools faidx` using pure js
TypeScript · JavaScript · Shell★ 2↓ 6,430/moSep 15, 2026
MITSep 15, 2026 · metrics 2.10.0
npm
67Goodhealth index
GMOD/ucsc-hub-js
read and write UCSC track and assembly hub files in node or the browser
TypeScript★ 5↓ 19.5K/moSep 15, 2026
MITSep 15, 2026 · metrics 2.10.0