Public record
Software health reportschema 0.15.0 · metrics 1.13.0 · 2026-07-20 01:50 UTC

PharmGKB / PharmCAT

The Pharmacogenomic Clinical Annotation Tool

Java · PythonMPL-2.0★ 183 stars⑂ 62 forkssince Apr 2016View on GitHub ↗
#pharmacogenomics#bioinformatics#haplotype-mapping#haplotypecaller#vcf

PharmGKB/PharmCAT holds a health index of 67 out of 100, placing it in the Moderate band. It scores highest on Vitality (82/100) and lowest on Security (41/100). It was last updated today. 2 contributors account for most of its recent work.

67
overall / 100
Moderate

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.

67
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

Ownership

PharmGKBOrganization
40 followers32 public repossince Jun 2011

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

82Good · 22% of overall

Development activity

82Good
How it's scored
36/36Push recency — last push 0 days ago
18/36Commit cadence — 26/52 weeks with commits
18/18Commit volume — 151 commits in the last year
10/10OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year151
human_commit_share—
days_since_last_push0
active_weeks_last_year26

Release discipline

83Good
How it's scored
27/27Ships releases — 63 releases published
36/36Release recency — latest release 6 days ago
19.8/27Release cadence — a release every ~76.1 days
0/10OpenSSF Scorecard: Signed-Releases — Project has not signed or included provenance with any releases.
Inputs used
releases_count63
latest_release_tagv3.4.0
releases_from_tagsno
days_since_latest_release6
mean_days_between_releases76.1

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

65Moderate · 18% of overall

Popularity & adoption

60Moderate
How it's scored
36.7/60Stars — 183 stars
14.9/25Forks — 62 forks
8/15Watchers — 28 watchers
Inputs used
forks62
stars183
watchers28
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

70Good
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (MPL-2.0)
18/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
has_contributingyes
has_issue_templateno
has_code_of_conductno
has_pull_request_templateno

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

60Moderate · 24% of overall

Maintainer resilience (bus factor)

61Moderate
How it's scored
25.2/54Bus factor — 2 contributor(s) cover half of all commits
12.4/22.5Commit distribution — top contributor authored 45% of commits
13.5/13.5Contributor breadth — 17 contributors
10/10OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations
Inputs used
bus_factor2
contributors_sampled17
top_contributor_share0.448

Issue & PR responsiveness

54Moderate
How it's scored
40.3/46.8Issue resolution — 86% of issues closed
14.2/38.3PR acceptance — 10/27 decided PRs merged
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs10
open_issues28
closed_issues177
issue_closed_ratio0.863
closed_unmerged_prs17

Ownership & stewardship

65Moderate
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
11.6/25Owner reach — 40 followers of PharmGKB
23.1/25Track record — 32 public repos, account ~15 yr old
Inputs used
followers40
owner_typeOrganization
is_verified—
owner_loginPharmGKB
public_repos32
account_age_days5,498

Engineering Quality

Are baseline engineering and documentation practices in place?

81Good · 20% of overall

Engineering practices

68Moderate
How it's scored
24/24CI workflows — 7 workflow(s)
24/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
6.4/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — no data
Inputs used
has_ciyes
has_testsyes
has_editorconfigyes
has_linter_configno
has_precommit_configno
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.

Documentation

100Excellent
How it's scored
30/30README
25/25Documentation directory
15/15Documentation / homepage site — https://pharmcat.org
10/10Repository description
10/10Topics — 5 topics
10/10Wiki
Inputs used
topicspharmacogenomics, bioinformatics, haplotype-mapping, haplotypecaller, vcf
has_wikiyes
homepagehttps://pharmcat.org
has_readmeyes
has_docs_diryes
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

41At risk · 16% of overall

Security posture

41At risk
How it's scored
6.8/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — no data
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 4 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
7.5/7.5Dependency-Update-Tool — update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
7.5/7.5Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — Project has not signed or included provenance with any releases.
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
0/7.5Vulnerabilities — 85 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated17
scorecard_versionv5.5.0
checks_inconclusive1
scorecard_aggregate4.1
Excluded from scoring (no data or not applicable): ci_tests. Remaining weights renormalized.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.

73Good · 0% of overall

Agent context & guidance

75Good
How it's scored
45/45Agent instructions — AGENTS.md, CLAUDE.md
0/15Machine-readable docs (llms.txt)
0/40Legible commit history — no data
Inputs used
has_llms_txtno
legible_history_share—
agent_instruction_filesAGENTS.md, CLAUDE.md
agent_instruction_max_bytes3,117
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.

Verify loop (build / test / typecheck)

74Good
How it's scored
18/18One-command bootstrap — Makefile, docs/Makefile
22/22Automated tests
0/11Lint / format config
11/11Static type checking — Java (statically typed)
10/10Reproducible environment — Dockerfile, lockfile
0/10Demonstrated agent practice — no data
0/8Automated maintenance — no data
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfilesGemfile.lock, yarn.lock
has_dockerfileyes
typed_languageyes
bootstrap_filesMakefile, docs/Makefile
has_devcontainerno
has_linter_configno
typecheck_configs—
agent_commit_share—
toolchain_manifests—
dependency_bot_commit_share—
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.

Code legibility for models

99Excellent
How it's scored
45/45Type-checkable code — Java (statically typed)
54/55Manageable file sizes — 4/218 source files over 60KB
Inputs used
primary_languageJava
largest_source_bytes3,019,631
source_files_sampled218
oversized_source_files4

Machine-readable interfaces

40At risk
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
0/20MCP server
40/40Runnable examples — examples
Inputs used
example_dirsexamples
has_mcp_signalno
api_schema_files—

Key facts

183GitHub stars
17contributors
151commits, last 12 months
0days since last push
63releases
2bus factor
28open issues
Maven, npm, PyPI, RubyGemspackage ecosystems

More detail

OpenSSF Scorecard 4.1 / 10
4.1aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-20 01:50 UTC

9Binary-Artifactsbinaries present in source code
0Branch-Protectionbranch protection not enabled on development/release branches
n/aCI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
10Contributorsproject has 4 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
10Dependency-Update-Toolupdate tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
10Maintained30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
0Signed-ReleasesProject has not signed or included provenance with any releases.
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
0Vulnerabilities85 existing vulnerabilities detected
Direct dependencies 14
RegistryPackageVersion constraintManifest
RubyGemsbundler>= 2.5.3docs/Gemfile
RubyGemscsv~> 3.0docs/Gemfile
RubyGemsjekyll>= 4.3.4docs/Gemfile
RubyGemsjemoji~> 0.13.0docs/Gemfile
RubyGemsjust-the-docs>= 0.10.0docs/Gemfile
RubyGemskramdown-parser-gfm>= 1.1.0docs/Gemfile
RubyGemsostruct~> 0.6.0docs/Gemfile
RubyGemsrouge>= 4.2.1docs/Gemfile
RubyGemsescape_utils>= 1.3.0docs/Gemfile
RubyGemstzinfo~> 2.0docs/Gemfile
RubyGemstzinfo-data—docs/Gemfile
RubyGemswdm~> 0.1.1docs/Gemfile
RubyGemshttp_parser.rb~> 0.6.0docs/Gemfile
RubyGemssass-embedded1.78.0docs/Gemfile
All dependencies 1,386

Full resolved dependency set from the GitHub dependency graph: 13 direct and 1,373 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

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Raw JSON report machine-readable
{
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        "haplotypecaller",
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        "Makefile": 9172,
        "Dockerfile": 4853,
        "Handlebars": 48557,
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      },
      "pushed_at": "2026-07-19T22:52:46Z",
      "created_at": "2016-04-07T01:38:19Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-18T04:20:17Z",
      "description": "The Pharmacogenomic Clinical Annotation Tool",
      "is_archived": false,
      "is_disabled": false,
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      "license_spdx_raw": "MPL-2.0",
      "primary_language": "Java",
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      "blog": "http://www.pharmgkb.org",
      "name": "PharmGKB",
      "type": "Organization",
      "login": "PharmGKB",
      "company": null,
      "location": null,
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          "login": "BinglanLi",
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        {
          "type": "User",
          "login": "lester-pharmgkb",
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        {
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          "login": "scdudek",
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        },
        {
          "type": "User",
          "login": "mwcarrillo",
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          "avatar_url": "https://avatars.githubusercontent.com/u/15913190?v=4"
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        {
          "type": "User",
          "login": "newgene",
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          "avatar_url": "https://avatars.githubusercontent.com/u/130158?v=4"
        },
        {
          "type": "User",
          "login": "kuanyili",
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          "avatar_url": "https://avatars.githubusercontent.com/u/1058736?v=4"
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      ],
      "contributors_sampled": 17,
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      "has_tests": true,
      "ci_workflows": [
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        "ci-preprocessor.yml",
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        "release-ghost.yml",
        "release.yml"
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      "linter_configs": [],
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      "has_linter_config": false,
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
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          {
            "name": "Contributors",
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
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          {
            "name": "Dangerous-Workflow",
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            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
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            "reason": "update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
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            "name": "Fuzzing",
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          {
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
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          {
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          {
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          {
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            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
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                "key": "openssf_scorecard_contributors",
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              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
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            ]
          },
          {
            "key": "stewardship",
            "band": "moderate",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "followers": 40,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "PharmGKB",
              "public_repos": 32,
              "account_age_days": 5498
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "40 followers of PharmGKB",
                "points": 11.6,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 40,
                      "login": "PharmGKB"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "32 public repos, account ~15 yr old",
                "points": 23.1,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 32
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 15
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "good",
        "name": "Engineering Quality",
        "value": 81,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "moderate",
            "name": "Engineering practices",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_ci_tests"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 68,
            "inputs": {
              "has_ci": true,
              "has_tests": true,
              "has_editorconfig": true,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "7 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 7
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 24,
                "status": "met",
                "details": [],
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              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
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              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
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                "points": 0,
                "status": "missed",
                "details": [],
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              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
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                "points": 6.4,
                "status": "met",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
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                ],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "excellent",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "topics": [
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                "haplotype-mapping",
                "haplotypecaller",
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              "has_docs_dir": true,
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            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 25,
                "status": "met",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
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                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "5 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 5
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
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        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
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            "name": "Security posture",
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              {
                "code": "excluded_no_data",
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                  "components": [
                    "ci_tests"
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              }
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            "value": 41,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 17,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 1,
              "scorecard_aggregate": 4.1
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 6.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
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              },
              {
                "key": "ci_tests",
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                "status": "excluded",
                "details": [
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                    "code": "no_data",
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                  }
                ],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 4 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "update tool detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
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                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
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                "points": 0,
                "status": "missed",
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                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "no SAST tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
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                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
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                "key": "signed_releases",
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                "key": "token_permissions",
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                "status": "missed",
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                "key": "vulnerabilities",
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                "status": "missed",
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            "key": "high_risk_jurisdiction_exposure",
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                "code": "jurisdiction_evidence_limits",
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              }
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            "value": 100,
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                "Iran",
                "North Korea"
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              "assessed_self_published_locations": 4
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                "key": "policy_exposure_multiplier",
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                "points": 100,
                "status": "met",
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                  }
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                "max_points": 100
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            ]
          }
        ],
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      },
      {
        "key": "ai_readiness",
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            "name": "Agent context & guidance",
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                "code": "excluded_no_data",
                "params": {
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                }
              },
              {
                "code": "weights_renormalized",
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            "value": 75,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": null,
              "agent_instruction_files": [
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            "components": [
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                "key": "agent_instructions",
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                "detail": "AGENTS.md, CLAUDE.md",
                "points": 45,
                "status": "met",
                "details": [
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                "max_points": 45
              },
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                "key": "machine_readable_docs_llms_txt",
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                "status": "missed",
                "details": [],
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              {
                "key": "legible_commit_history",
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                "status": "excluded",
                "details": [
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                    "code": "no_data",
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                "max_points": 40
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          },
          {
            "key": "ai_verify_loop",
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            "notes": [
              {
                "code": "excluded_no_data",
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                  "components": [
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            "inputs": {
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                "key": "automated_tests",
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                "key": "lint_format_config",
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                "key": "static_type_checking",
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                "details": [
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              {
                "key": "automated_maintenance",
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            },
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                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
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                "key": "mcp_server",
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              },
              {
                "key": "runnable_examples",
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        ],
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    ],
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  },
  "warnings": [],
  "report_type": "repository",
  "generated_at": "2026-07-20T01:50:22.696222Z",
  "schema_version": "0.15.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/p/PharmGKB/PharmCAT.svg",
  "full_name": "PharmGKB/PharmCAT",
  "license_state": "standard",
  "license_spdx": "MPL-2.0"
}

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.15.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics.