PyPI
scverse/anndata
Annotated data.
BSD-3-ClauseAug 27, 2026 · metrics 2.10.0
All tags
Catalogue tag
#bioinformatics
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
204 records
PyPI
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
PyPI · npm
plotly/dash
Data Apps & Dashboards for Python. No JavaScript Required.
MITSep 16, 2026 · metrics 2.10.0
npm · PyPI
galaxyproject/galaxy
Data intensive science for everyone.
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
scverse/pertpy
Single-cell perturbation analysis
MITOct 23, 2026 · metrics 2.10.0
PyPI · Packagist · crates.io +2
firecrawl/firecrawl
The context API to search, scrape, and interact with the web at scale. 🔥
AGPL-3.0Sep 16, 2026 · metrics 2.10.0
PyPI
cogent3/cogent3
Comparative Genomics Toolkit 3
BSD-3-ClauseOct 21, 2026 · metrics 2.10.0
PyPI
scverse/decoupler
Python package to perform enrichment analysis from omics data.
BSD-3-ClauseSep 18, 2026 · metrics 2.10.0
crates.io · PyPI · npm
stjude-rust-labs/sprocket
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
Apache-2.0Sep 15, 2026 · metrics 2.10.0
PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
PyPI
scverse/rapids-singlecell
rapids-singlecell: GPU-accelerated framework for scRNA analysis
MITSep 12, 2026 · metrics 2.10.0
npm · PyPI
genome-spy/genome-spy
A visualization grammar and GPU-accelerated toolkit for genomic data
MITSep 19, 2026 · metrics 2.10.0
PyPI
K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
MITSep 16, 2026 · metrics 2.10.0
npm
broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
BSD-3-ClauseSep 15, 2026 · metrics 2.10.0
PyPI
broadinstitute/viral-ngs
viral-ngs: command line tools and wrappers for processing raw viral genomic data
MITOct 19, 2026 · metrics 2.10.0
PyPI · crates.io
genomoncology/biomcp
BioMCP: Biomedical Model Context Protocol
MITSep 12, 2026 · metrics 2.10.0
PyPI
pysam-developers/pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
MITSep 12, 2026 · metrics 2.10.0
crates.io
Psy-Fer/kuva
A scientific plotting library in Rust
MITOct 20, 2026 · metrics 2.10.0
PyPI
ablab/IsoQuant
A universal toolkit for upstream processing of long RNA reads
Custom licenseSep 10, 2026 · metrics 2.10.0
npm
plotly/react-plotly.js
A plotly.js React component from Plotly 📈
MITSep 20, 2026 · metrics 2.10.0
crates.io
rust-bio/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
MITOct 4, 2026 · metrics 2.10.0
crates.io · npm
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
BSD-3-ClauseOct 23, 2026 · metrics 2.10.0
PyPI · crates.io · npm
Sigilweaver/OpenTFRaw
Pure-Rust reader for Thermo Fisher .raw mass-spectrometry files, with Python bindings.
Custom licenseOct 23, 2026 · metrics 2.10.0
PyPI · crates.io
biotite-dev/biotite
A comprehensive library for computational molecular biology
BSD-3-ClauseAug 27, 2026 · metrics 2.10.0
PyPI
hail-is/hail
Cloud-native genomic dataframes and batch computing
MITSep 17, 2026 · metrics 2.10.0
PyPI
musharna/data-aggregator-mcp
Unified research-data acquisition MCP — search & fetch datasets across Zenodo, DataCite, NCBI omics (GEO/SRA/BioProject), and literature (PubMed/OpenAIRE) behind one normalized model.
MITOct 12, 2026 · metrics 2.10.0
—
samtools/htslib
C library for high-throughput sequencing data formats
Custom licenseOct 20, 2026 · metrics 2.10.0
PyPI
M4i-Imaging-Mass-Spectrometry/thyra
A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless integration with spatial omics analysis workflows.
MITOct 19, 2026 · metrics 2.10.0
PyPI
biopragmatics/pyobo
📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures
MITSep 20, 2026 · metrics 2.10.0
Maven
cdk/cdk
The Chemistry Development Kit
LGPL-2.1Oct 19, 2026 · metrics 2.10.0