Public recordCritical
Software health reportschema 0.16.0 · metrics 1.13.0 · 2026-07-20 17:33 UTC
antigenomics / vdjtools
Analysis of immune repertoire sequencing results
antigenomics/vdjtools holds a health index of 12 out of 100, placing it in the Critical band. It scores highest on Vitality (79/100) and lowest on Security (10/100). It was last updated 1 day ago. A single contributor accounts for most of its recent work.
12
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
12
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
High-Risk Jurisdiction Policy applies a 20% multiplier to weighted overall health and gives it an At risk ceiling of 49.
Ownership
AntigenOmicsOrganization
33 followers62 public repossince May 2014
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish | Tags |
|---|---|---|---|---|---|---|
| PyPI | vdjtools | 3.0.0 | 5,532 | 12 | 1 day ago | immunologytcrbcrairrrepertoirepgenolgaigorbioinformatics |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
79
Development activity
65Moderate
How it's scored
| 36/36 | Push recency — last push 1 days ago |
| 1.4/36 | Commit cadence — 2/52 weeks with commits |
| 18/18 | Commit volume — 260 commits in the last year |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
Inputs used
| commits_last_year | 260 |
| human_commit_share | — |
| days_since_last_push | 1 |
| active_weeks_last_year | 2 |
Release discipline
100Excellent
How it's scored
| 27/27 | Ships releases — 40 releases published |
| 36/36 | Release recency — latest release 1 days ago |
| 27/27 | Release cadence — a release every ~0.6 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 40 |
| latest_release_tag | v3.0.0 |
| releases_from_tags | no |
| days_since_latest_release | 1 |
| mean_days_between_releases | 0.6 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
55
Popularity & adoption
56Moderate
How it's scored
| 35/60 | Stars — 144 stars |
| 13.4/25 | Forks — 42 forks |
| 7.1/15 | Watchers — 20 watchers |
Inputs used
| forks | 42 |
| stars | 144 |
| watchers | 20 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
50Moderate
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (GPL-3.0) |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Ecosystem adoption (downloads)
62Moderate
How it's scored
| 49.9/80 | Monthly downloads — 5,532 downloads/month across pypi |
| 0/20 | Registry dependents — not reported by this ecosystem |
Inputs used
| packages | vdjtools |
| dependents | — |
| ecosystems | pypi |
| total_downloads | — |
| monthly_downloads | 5,532 |
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
62
Maintainer resilience (bus factor)
20Critical
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 0/22.5 | Commit distribution — top contributor authored 100% of commits |
| 1.4/13.5 | Contributor breadth — 1 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 1 |
| top_contributor_share | 1 |
How it's scored
| 46.8/46.8 | Issue resolution — 100% of issues closed |
| 32.2/38.3 | PR acceptance — 16/19 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 16 |
| open_issues | 0 |
| closed_issues | 158 |
| issue_closed_ratio | 1 |
| closed_unmerged_prs | 3 |
Ownership & stewardship
66Moderate
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 11/25 | Owner reach — 33 followers of antigenomics |
| 25/25 | Track record — 62 public repos, account ~12 yr old |
Inputs used
| followers | 33 |
| owner_type | Organization |
| is_verified | — |
| owner_login | antigenomics |
| public_repos | 62 |
| account_age_days | 4,433 |
Package maintenance
100Excellent
How it's scored
| 25/25 | Published & resolvable — 1 package(s) on pypi |
| 35/35 | Publish recency — latest publish 1 days ago |
| 20/20 | Version history — 12 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | vdjtools |
| ecosystems | pypi |
| any_deprecated | no |
| min_days_since_publish | 1 |
Engineering Quality
Are baseline engineering and documentation practices in place?
72
Engineering practices
60Moderate
How it's scored
| 24/24 | CI workflows — 3 workflow(s) |
| 24/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.
Documentation
90Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 15/15 | Documentation / homepage site — https://docs.isalgo.dev/vdjtools/ |
| 10/10 | Repository description |
| 10/10 | Topics — 8 topics |
| 0/10 | Wiki |
Inputs used
| topics | bioinformatics, immunology, repertoire, t-cell, stat, antibody, t-cell-receptor, rep-seq |
| has_wiki | no |
| homepage | https://docs.isalgo.dev/vdjtools/ |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
10
Security posture
10Critical
Jurisdiction risk alert
High-risk jurisdiction exposure detected
2 contributor organization profilesRussia1 software.redFlag.role.ownerRussia1 top contributor profilesRussiaSecurity and overall rating: At risk ceiling
Based on self-published public profile locations. This governance signal does not determine nationality, citizenship, intent, sanctions status, or individual trustworthiness.
How jurisdiction exposure is assessedHow it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 3.8/7.5 | Branch-Protection — branch protection is not maximal on development and all release branches |
| 0/2.5 | CI-Tests — no data |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 4 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 4.9 |
| high_risk_jurisdiction_cap | 49 |
| high_risk_jurisdiction_multiplier | 20 |
| security_posture_after_multiplier | 10 |
| security_posture_before_jurisdiction | 49 |
Excluded from scoring (no data or not applicable): ci_tests, signed_releases. Remaining weights renormalized. High-Risk Jurisdiction Policy applies a 20% multiplier and gives Security posture an At risk ceiling of 49.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
66
Agent context & guidance
75Good
How it's scored
| 45/45 | Agent instructions — CLAUDE.md |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — no data |
Inputs used
| has_llms_txt | no |
| legible_history_share | — |
| agent_instruction_files | CLAUDE.md |
| agent_instruction_max_bytes | 31,372 |
Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.
Verify loop (build / test / typecheck)
62Moderate
How it's scored
| 18/18 | One-command bootstrap — appendix/Makefile, docs/Makefile |
| 22/22 | Automated tests |
| 0/11 | Lint / format config |
| 11/11 | Static type checking — python/vdjtools/py.typed |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no data |
| 0/8 | Automated maintenance — no data |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | appendix/Makefile, docs/Makefile |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | python/vdjtools/py.typed |
| agent_commit_share | — |
| toolchain_manifests | — |
| dependency_bot_commit_share | — |
Excluded from scoring (no data or not applicable): Demonstrated agent practice, Automated maintenance. Remaining weights renormalized.
How it's scored
| 27/45 | Type-checkable code — Python with type-check config (python/vdjtools/py.typed) |
| 55/55 | Manageable file sizes — 0/168 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 53,607 |
| source_files_sampled | 168 |
| oversized_source_files | 0 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples |
Inputs used
| example_dirs | examples |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
144GitHub stars
1contributors
260commits, last 12 months
1days since last push
40releases
1bus factor
0open issues
PyPIpackage ecosystems
Data collection warnings
- deps.dev does not index pypi:vdjtools@3.0.0; advisories assessed against the repository dependency graph instead
- No resolved dependencies carried a version and a supported ecosystem
More detail
OpenSSF Scorecard 4.9 / 10
4.9aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 5 | Branch-Protection | branch protection is not maximal on development and all release branches |
| n/a | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 4 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Direct dependencies 8
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| PyPI | polars | >=1.0 | pyproject.toml |
| PyPI | numpy | — | pyproject.toml |
| PyPI | scipy | — | pyproject.toml |
| PyPI | typer | >=0.12 | pyproject.toml |
| PyPI | arda-mapper | >=2.5.5 | pyproject.toml |
| PyPI | seqtree | >=0.5.0 | pyproject.toml |
| PyPI | vdjmatch | >=0.1.0 | pyproject.toml |
| PyPI | huggingface_hub | — | pyproject.toml |
All dependencies 14
Full resolved dependency set from the GitHub dependency graph: 8 direct and 6 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | arda-mapper | — | direct |
| PyPI | huggingface-hub | — | direct |
| PyPI | numpy | — | direct |
| PyPI | polars | — | direct |
| PyPI | scipy | — | direct |
| PyPI | seqtree | — | direct |
| PyPI | typer | — | direct |
| PyPI | vdjmatch | — | direct |
| PyPI | nbsphinx | — | indirect |
| PyPI | pybind11 | — | indirect |
| PyPI | pydata-sphinx-theme | — | indirect |
| PyPI | pytest | — | indirect |
| PyPI | scikit-build-core | — | indirect |
| PyPI | sphinx | — | indirect |
Dependency advisories not assessed
Advisory matching could not run for this report: No resolved dependencies carried a version and a supported ecosystem
Raw JSON report machine-readable
{
"data": {
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"linter_configs": [],
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"has_precommit_config": false
},
"security_signals": {
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"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 5,
"reason": "branch protection is not maximal on development and all release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": null,
"reason": "no pull request found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
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"reason": "Found 0/30 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 4 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "no SAST tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
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"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
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"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
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"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "db9a587f37f437211a7916f8263191d86b67f6f2",
"ran_at": "2026-07-20T17:33:14Z",
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},
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"source": {
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"host": "github.com",
"name": "vdjtools",
"owner": "antigenomics"
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"metrics": {
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"key": "overall",
"band": "critical",
"name": "Overall health",
"note": "High-Risk Jurisdiction Policy applies a 20% multiplier to weighted overall health and gives it an At risk ceiling of 49.",
"notes": [
{
"code": "jurisdiction_overall_adjustment",
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"cap": 49,
"pct": 20
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}
],
"value": 12,
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"vitality": 79,
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"high_risk_jurisdiction_multiplier": 20,
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"components": []
},
"categories": [
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"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 79,
"weight": 0.22,
"metrics": [
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"key": "development_activity",
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"note": null,
"notes": [],
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"inputs": {
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"days_since_last_push": 1,
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{
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{
"key": "commit_volume",
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"key": "openssf_scorecard_maintained",
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"details": [],
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]
},
{
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},
{
"code": "weights_renormalized",
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],
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"inputs": {
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{
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{
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{
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},
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"guards": [],
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"components": [
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],
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{
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"weight": 0.18,
"metrics": [
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"key": "popularity",
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"note": null,
"notes": [],
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"components": [
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"points": 35,
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"code": "stars",
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}
],
"max_points": 60
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{
"key": "forks",
"name": "Forks",
"detail": "42 forks",
"points": 13.4,
"status": "partial",
"details": [
{
"code": "forks",
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}
],
"max_points": 25
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{
"key": "watchers",
"name": "Watchers",
"detail": "20 watchers",
"points": 7.1,
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"code": "watchers",
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}
],
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]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
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"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
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{
"key": "license",
"name": "License",
"detail": "recognized license (GPL-3.0)",
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"status": "met",
"details": [
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"code": "license_standard",
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{
"code": "license_spdx",
"params": {
"spdx": "GPL-3.0"
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],
"max_points": 22.5
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{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
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"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
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},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
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]
},
{
"key": "ecosystem_adoption",
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"name": "Ecosystem adoption (downloads)",
"note": "Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.",
"notes": [
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"code": "excluded_no_data",
"params": {
"components": [
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},
{
"code": "weights_renormalized",
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],
"value": 62,
"inputs": {
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"dependents": null,
"ecosystems": "pypi",
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"components": [
{
"key": "monthly_downloads",
"name": "Monthly downloads",
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"points": 49.9,
"status": "partial",
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{
"code": "downloads_monthly",
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"count": 5532,
"ecosystems": "pypi"
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}
],
"max_points": 80
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{
"key": "registry_dependents",
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"detail": "not reported by this ecosystem",
"points": 0,
"status": "excluded",
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"code": "not_reported_by_this_ecosystem",
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}
],
"max_points": 20
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]
}
],
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},
{
"key": "governance",
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"value": 62,
"weight": 0.24,
"metrics": [
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"key": "maintainer_resilience",
"band": "critical",
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"notes": [],
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"components": [
{
"key": "bus_factor",
"name": "Bus factor",
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"status": "partial",
"details": [
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"code": "bus_factor",
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}
],
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{
"key": "commit_distribution",
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"detail": "top contributor authored 100% of commits",
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"status": "missed",
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"code": "top_contributor_share",
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}
],
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{
"key": "contributor_breadth",
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"detail": "1 contributors",
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"status": "partial",
"details": [
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"code": "contributors_sampled",
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}
],
"max_points": 13.5
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{
"key": "openssf_scorecard_contributors",
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"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
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"inputs": {
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"issue_closed_ratio": 1,
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"components": [
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"key": "issue_resolution",
"name": "Issue resolution",
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"status": "met",
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"code": "issues_closed_share",
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}
],
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{
"key": "pr_acceptance",
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"points": 32.2,
"status": "partial",
"details": [
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"code": "decided_prs_merged",
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"decided": 19
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}
],
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{
"key": "openssf_scorecard_code_review",
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"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
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]
},
{
"key": "stewardship",
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"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 66,
"inputs": {
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"is_verified": null,
"owner_login": "antigenomics",
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"account_age_days": 4433
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"components": [
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"key": "ownership_backing",
"name": "Ownership backing",
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"details": [
{
"code": "owner_organization",
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}
],
"max_points": 30
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{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
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{
"key": "owner_reach",
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"detail": "33 followers of antigenomics",
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"status": "partial",
"details": [
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"code": "owner_followers",
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"login": "antigenomics"
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}
],
"max_points": 25
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{
"key": "track_record",
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"detail": "62 public repos, account ~12 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
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},
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"code": "account_age_years",
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]
},
{
"key": "package_maintenance",
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"note": null,
"notes": [],
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"inputs": {
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"ecosystems": "pypi",
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"components": [
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"key": "published_resolvable",
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"detail": "1 package(s) on pypi",
"points": 25,
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"code": "packages_published",
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"ecosystems": "pypi"
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}
],
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{
"key": "publish_recency",
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"points": 35,
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"code": "publish_recency",
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],
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{
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"code": "published_versions",
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}
],
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{
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]
}
],
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}
],
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{
"key": "tests_present",
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"points": 24,
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{
"key": "linter_config",
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"key": "pre_commit_hooks",
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],
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]
},
{
"key": "documentation",
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"inputs": {
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{
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"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://docs.isalgo.dev/vdjtools/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "8 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 8
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}
],
"max_points": 10
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{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "critical",
"name": "Security",
"value": 10,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "critical",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): CI-Tests, Signed-Releases. Remaining weights renormalized. High-Risk Jurisdiction Policy applies a 20% multiplier to Security posture and gives it an At risk ceiling of 49.",
"notes": [
{
"code": "excluded_no_data",
"params": {
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},
{
"code": "weights_renormalized",
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{
"code": "jurisdiction_posture_adjustment",
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"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4.9,
"high_risk_jurisdiction_cap": 49,
"high_risk_jurisdiction_multiplier": 20,
"security_posture_after_multiplier": 10,
"security_posture_before_jurisdiction": 49
},
"components": [
{
"key": "binary_artifacts",
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"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
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"points": 3.8,
"status": "partial",
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},
{
"key": "ci_tests",
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],
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{
"key": "cii_best_practices",
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"points": 0,
"status": "missed",
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},
{
"key": "code_review",
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"points": 0,
"status": "missed",
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},
{
"key": "contributors",
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"points": 2.5,
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},
{
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"points": 10,
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},
{
"key": "dependency_update_tool",
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},
{
"key": "fuzzing",
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"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "license",
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},
{
"key": "maintained",
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"points": 7.5,
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},
{
"key": "packaging",
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"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
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"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
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"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
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"points": 0,
"status": "missed",
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},
{
"key": "signed_releases",
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"code": "no_data",
"params": {}
}
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"max_points": 7.5
},
{
"key": "token_permissions",
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"status": "missed",
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"max_points": 7.5
},
{
"key": "vulnerabilities",
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}
]
},
{
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"notes": [
{
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}
],
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{
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"country": "Russia"
},
{
"role": "owner",
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"country": "Russia"
},
{
"role": "top_contributor",
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"country": "Russia"
}
],
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"Iran",
"North Korea"
],
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"assessed_self_published_locations": 4
},
"components": [
{
"key": "policy_exposure_multiplier",
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{
"code": "jurisdiction_exposure",
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"country": "Russia"
}
},
{
"code": "jurisdiction_exposure_next",
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"count": 1,
"country": "Russia"
}
},
{
"code": "jurisdiction_exposure_next",
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"country": "Russia"
}
}
],
"max_points": 100
}
]
}
],
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},
{
"key": "ai_readiness",
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"name": "AI Readiness",
"value": 66,
"weight": 0,
"metrics": [
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"key": "ai_agent_context",
"band": "good",
"name": "Agent context & guidance",
"note": "Excluded from scoring (no data or not applicable): Legible commit history. Remaining weights renormalized.",
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"components": [
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{
"code": "weights_renormalized",
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"agent_instruction_files": [
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"components": [
{
"key": "agent_instructions",
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"detail": "CLAUDE.md",
"points": 45,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "CLAUDE.md"
}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
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"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
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"code": "no_data",
"params": {}
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}
]
},
{
"key": "ai_verify_loop",
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"code": "excluded_no_data",
"params": {
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}
},
{
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"params": {}
}
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"inputs": {
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"has_tests": true,
"lockfiles": [],
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{
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"details": [],
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},
{
"key": "lint_format_config",
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"points": 0,
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},
{
"key": "static_type_checking",
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{
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},
{
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{
"code": "no_data",
"params": {}
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],
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},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
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"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
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"status": "missed",
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}
]
},
{
"key": "ai_code_legibility",
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"oversized_source_files": 0
},
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}
],
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},
{
"key": "manageable_file_sizes",
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"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
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"sampled": 168,
"oversized": 0
}
}
],
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}
]
},
{
"key": "ai_interfaces",
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"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
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"api_schema_files": []
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"components": [
{
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"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
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"points": 0,
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},
{
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"points": 40,
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"code": "file_list",
"params": {
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}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"deps.dev does not index pypi:vdjtools@3.0.0; advisories assessed against the repository dependency graph instead",
"No resolved dependencies carried a version and a supported ecosystem"
],
"report_type": "repository",
"generated_at": "2026-07-20T17:33:22.086229Z",
"schema_version": "0.16.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/a/antigenomics/vdjtools.svg",
"full_name": "antigenomics/vdjtools",
"license_state": "standard",
"license_spdx": "GPL-3.0"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.16.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — PyPI.