Public recordAt risk
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-28 15:11 UTC
egg5154 / MolSculptor
egg5154/MolSculptor holds a health index of 42 out of 100, placing it in the At risk band. It scores highest on Vitality (62/100) and lowest on Security (21/100). It was last updated 8 days ago. A single contributor accounts for most of its recent work.
42
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
42
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
Yanheng LiPersonal account
4 followers2 public repossince Mar 2019
This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
62
Development activity
48At risk
How it's scored
| 28.8/36 | Push recency — last push 8 days ago |
| 4.8/36 | Commit cadence — 7/52 weeks with commits |
| 9.7/18 | Commit volume — 11 commits in the last year |
| 0/10 | OpenSSF Scorecard: Maintained — no data |
Inputs used
| commits_last_year | 11 |
| human_commit_share | 1 |
| days_since_last_push | 8 |
| active_weeks_last_year | 7 |
Release discipline
84Good
How it's scored
| 27/27 | Ships releases — 1 releases published |
| 36/36 | Release recency — latest release 8 days ago |
| 12.6/27 | Release cadence — cadence unknown (single release) |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 1 |
| latest_release_tag | v1.0.0 |
| releases_from_tags | no |
| days_since_latest_release | 8 |
| mean_days_between_releases | — |
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
35
Popularity & adoption
22Critical
How it's scored
| 22.1/60 | Stars — 24 stars |
| 0/25 | Forks — 0 forks |
| 0/15 | Watchers — 2 watchers |
Inputs used
| forks | 0 |
| stars | 24 |
| watchers | 2 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
50Moderate
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (Apache-2.0) |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
51
Maintainer resilience (bus factor)
22Critical
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 7.9/22.5 | Commit distribution — top contributor authored 65% of commits |
| 2.7/13.5 | Contributor breadth — 2 contributors |
| 0/10 | OpenSSF Scorecard: Contributors — no data |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 2 |
| top_contributor_share | 0.649 |
Issue & PR responsiveness
100Excellent
How it's scored
| 46.8/46.8 | Issue resolution — 100% of issues closed |
| 0/38.3 | PR acceptance — no decided pull requests or no data |
| 0/15 | OpenSSF Scorecard: Code-Review — no data |
Inputs used
| merged_prs | 0 |
| open_issues | 0 |
| closed_issues | 3 |
| issue_closed_ratio | 1 |
| closed_unmerged_prs | 0 |
Excluded from scoring (no data or not applicable): PR acceptance. Remaining weights renormalized.
Ownership & stewardship
38At risk
How it's scored
| 10/30 | Ownership backing — personal (user) account |
| 0/20 | Verified domain — not applicable to user accounts |
| 5/25 | Owner reach — 4 followers of egg5154 |
| 15.5/25 | Track record — 2 public repos, account ~7 yr old |
Inputs used
| followers | 4 |
| owner_type | User |
| is_verified | — |
| owner_login | egg5154 |
| public_repos | 2 |
| account_age_days | 2,704 |
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.
Engineering Quality
Are baseline engineering and documentation practices in place?
34
Engineering practices
30At risk
How it's scored
| 0/24 | CI workflows |
| 24/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | no |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Documentation
40At risk
How it's scored
| 30/30 | README |
| 0/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 0/10 | Repository description |
| 0/10 | Topics |
| 10/10 | Wiki |
Inputs used
| topics | — |
| has_wiki | yes |
| homepage | — |
| has_readme | yes |
| has_docs_dir | no |
| has_description | no |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
21
Security posture
1Critical
How it's scored
| 0/30 | Security policy (SECURITY.md) |
| 0/25 | Dependabot config |
| 0/25 | Dependency lockfiles |
| 0/20 | CodeQL workflow |
Inputs used
| source | file_signals |
| lockfiles | — |
| manifests | requirements.txt |
| has_codeql_workflow | no |
| has_security_policy | no |
| has_dependabot_config | no |
Dependency advisories
100Excellent
How it's scored
| 35/35 | Direct dependencies free of known advisories — no direct dependency carries a known advisory |
| 0/25 | Indirect dependencies free of known advisories — transitive set not separable from development and test dependencies in this scope |
| 0/40 | No advisories left outstanding — no advisory carries a publication date |
Inputs used
| source | osv |
| advisories | 402 |
| affected_packages | 40 |
| assessed_packages | 245 |
| unassessed_packages | 0 |
| affected_by_severity | critical 9, high 17, moderate 13, low 1 |
| direct_affected_packages | 0 |
Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 245 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
24
Agent context & guidance
1Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — 0 of 37 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| legible_history_share | 0 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Verify loop (build / test / typecheck)
24Critical
How it's scored
| 0/18 | One-command bootstrap |
| 22/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no agent-authored commits among the last 37 |
| 0/8 | Automated maintenance — no automated dependency updates observed |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — no data |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Code legibility for models
55Moderate
How it's scored
| 0/45 | Type-checkable code — Jupyter Notebook without a type-check config |
| 55/55 | Manageable file sizes — 0/42 source files over 60KB |
Inputs used
| primary_language | Jupyter Notebook |
| largest_source_bytes | 39,449 |
| source_files_sampled | 42 |
| oversized_source_files | 0 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — notebooks |
Inputs used
| example_dirs | notebooks |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
24GitHub stars
2contributors
11commits, last 12 months
8days since last push
1releases
1bus factor
0open issues
PyPIpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- OpenSSF Scorecard did not return a usable result (exit code -9); skipping Scorecard checks
More detail
All dependencies 245
Full resolved dependency set from the GitHub dependency graph: 0 direct and 245 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | absl-py | 2.1.0 | indirect |
| PyPI | anyio | 4.3.0 | indirect |
| PyPI | argon2-cffi | 23.1.0 | indirect |
| PyPI | argon2-cffi-bindings | 21.2.0 | indirect |
| PyPI | arrow | 1.3.0 | indirect |
| PyPI | asttokens | 2.4.1 | indirect |
| PyPI | astunparse | 1.6.3 | indirect |
| PyPI | async-lru | 2.0.4 | indirect |
| PyPI | attrs | 23.2.0 | indirect |
| PyPI | babel | 2.15.0 | indirect |
| PyPI | beautifulsoup4 | 4.12.3 | indirect |
| PyPI | biopython | 1.84 | indirect |
| PyPI | biopython | 1.85 | indirect |
| PyPI | biotite | 0.40.0 | indirect |
| PyPI | bleach | 6.1.0 | indirect |
| PyPI | brokenaxes | 0.6.1 | indirect |
| PyPI | certifi | 2024.2.2 | indirect |
| PyPI | certifi | 2024.7.4 | indirect |
| PyPI | cffi | 1.16.0 | indirect |
| PyPI | charset-normalizer | 3.3.2 | indirect |
| PyPI | chex | 0.1.86 | indirect |
| PyPI | comm | 0.2.2 | indirect |
| PyPI | conda-pack | 0.7.1 | indirect |
| PyPI | contextlib2 | 21.6.0 | indirect |
| PyPI | contourpy | 1.2.1 | indirect |
| PyPI | cupy-cuda12x | 13.4.1 | indirect |
| PyPI | cutensor-cu12 | 2.2.0 | indirect |
| PyPI | cycler | 0.12.1 | indirect |
| PyPI | debugpy | 1.8.1 | indirect |
| PyPI | decorator | 5.1.1 | indirect |
| PyPI | defusedxml | 0.7.1 | indirect |
| PyPI | etils | 1.7.0 | indirect |
| PyPI | evox | 0.9.0 | indirect |
| PyPI | exceptiongroup | 1.2.1 | indirect |
| PyPI | executing | 2.0.1 | indirect |
| PyPI | fair-esm | 2.0.0 | indirect |
| PyPI | fastjsonschema | 2.19.1 | indirect |
| PyPI | fastrlock | 0.8.3 | indirect |
| PyPI | filelock | 3.14.0 | indirect |
| PyPI | filelock | 3.15.4 | indirect |
| PyPI | flatbuffers | 25.2.10 | indirect |
| PyPI | flax | 0.8.3 | indirect |
| PyPI | fonttools | 4.51.0 | indirect |
| PyPI | fonttools | 4.53.1 | indirect |
| PyPI | fqdn | 1.5.1 | indirect |
| PyPI | fsspec | 2024.5.0 | indirect |
| PyPI | fsspec | 2024.6.1 | indirect |
| PyPI | gast | 0.6.0 | indirect |
| PyPI | gemmi | 0.7.3 | indirect |
| PyPI | google-pasta | 0.2.0 | indirect |
| PyPI | grpcio | 1.74.0 | indirect |
| PyPI | h11 | 0.14.0 | indirect |
| PyPI | h5py | 3.13.0 | indirect |
| PyPI | hf-xet | 1.1.9 | indirect |
| PyPI | httpcore | 1.0.5 | indirect |
| PyPI | httpx | 0.27.0 | indirect |
| PyPI | huggingface-hub | 0.23.2 | indirect |
| PyPI | huggingface-hub | 0.34.4 | indirect |
| PyPI | idna | 3.7 | indirect |
| PyPI | importlib-resources | 6.4.0 | indirect |
| PyPI | importlib-resources | 6.4.3 | indirect |
| PyPI | ipykernel | 6.29.4 | indirect |
| PyPI | ipython | 8.24.0 | indirect |
| PyPI | ipywidgets | 8.1.2 | indirect |
| PyPI | isoduration | 20.11.0 | indirect |
| PyPI | jax | 0.4.28 | indirect |
| PyPI | jax-cuda12-pjrt | 0.4.28 | indirect |
| PyPI | jax-cuda12-plugin | 0.4.28 | indirect |
| PyPI | jaxlib | 0.4.28 | indirect |
| PyPI | jedi | 0.19.1 | indirect |
| PyPI | jinja2 | 3.1.4 | indirect |
| PyPI | joblib | 1.5.1 | indirect |
| PyPI | json5 | 0.9.25 | indirect |
| PyPI | jsonpointer | 2.4 | indirect |
| PyPI | jsonschema | 4.22.0 | indirect |
| PyPI | jsonschema-specifications | 2023.12.1 | indirect |
| PyPI | jupyter | 1.0.0 | indirect |
| PyPI | jupyter-client | 8.6.1 | indirect |
| PyPI | jupyter-console | 6.6.3 | indirect |
| PyPI | jupyter-core | 5.7.2 | indirect |
| PyPI | jupyter-events | 0.10.0 | indirect |
| PyPI | jupyter-lsp | 2.2.5 | indirect |
| PyPI | jupyter-server | 2.14.0 | indirect |
| PyPI | jupyter-server-terminals | 0.5.3 | indirect |
| PyPI | jupyterlab | 4.1.8 | indirect |
| PyPI | jupyterlab-pygments | 0.3.0 | indirect |
| PyPI | jupyterlab-server | 2.27.1 | indirect |
| PyPI | jupyterlab-widgets | 3.0.10 | indirect |
| PyPI | keras | 3.11.0 | indirect |
| PyPI | kiwisolver | 1.4.5 | indirect |
| PyPI | levenshtein | 0.25.1 | indirect |
| PyPI | libclang | 18.1.1 | indirect |
| PyPI | llvmlite | 0.42.0 | indirect |
| PyPI | markdown | 3.8.2 | indirect |
| PyPI | markdown-it-py | 3.0.0 | indirect |
| PyPI | markupsafe | 2.1.5 | indirect |
| PyPI | matplotlib | 3.9.0 | indirect |
| PyPI | matplotlib | 3.9.2 | indirect |
| PyPI | matplotlib-inline | 0.1.7 | indirect |
| PyPI | mdurl | 0.1.2 | indirect |
| PyPI | meeko | 0.6.0a0 | indirect |
| PyPI | mistune | 3.0.2 | indirect |
| PyPI | ml-collections | 0.1.1 | indirect |
| PyPI | ml-dtypes | 0.5.3 | indirect |
| PyPI | molvs | 0.1.1 | indirect |
| PyPI | mpmath | 1.3.0 | indirect |
| PyPI | msgpack | 1.0.8 | indirect |
| PyPI | namex | 0.1.0 | indirect |
| PyPI | nbclient | 0.10.0 | indirect |
| PyPI | nbconvert | 7.16.4 | indirect |
| PyPI | nbformat | 5.10.4 | indirect |
| PyPI | nest-asyncio | 1.6.0 | indirect |
| PyPI | networkx | 3.2.1 | indirect |
| PyPI | notebook | 7.1.3 | indirect |
| PyPI | notebook-shim | 0.2.4 | indirect |
| PyPI | numba | 0.59.1 | indirect |
| PyPI | numpy | 1.26.4 | indirect |
| PyPI | numpy | 2.0.0 | indirect |
| PyPI | nvidia-cublas-cu12 | 12.1.3.1 | indirect |
| PyPI | nvidia-cublas-cu12 | 12.4.5.8 | indirect |
| PyPI | nvidia-cuda-cupti-cu12 | 12.1.105 | indirect |
| PyPI | nvidia-cuda-cupti-cu12 | 12.4.127 | indirect |
| PyPI | nvidia-cuda-nvcc-cu12 | 12.4.131 | indirect |
| PyPI | nvidia-cuda-nvrtc-cu12 | 12.1.105 | indirect |
| PyPI | nvidia-cuda-nvrtc-cu12 | 12.4.127 | indirect |
| PyPI | nvidia-cuda-runtime-cu12 | 12.1.105 | indirect |
| PyPI | nvidia-cuda-runtime-cu12 | 12.4.127 | indirect |
| PyPI | nvidia-cudnn-cu12 | 8.9.7.29 | indirect |
| PyPI | nvidia-cudnn-cu12 | 9.1.0.70 | indirect |
| PyPI | nvidia-cufft-cu12 | 11.0.2.54 | indirect |
| PyPI | nvidia-cufft-cu12 | 11.2.1.3 | indirect |
| PyPI | nvidia-curand-cu12 | 10.3.2.106 | indirect |
| PyPI | nvidia-cusolver-cu12 | 11.4.5.107 | indirect |
| PyPI | nvidia-cusolver-cu12 | 11.6.1.9 | indirect |
| PyPI | nvidia-cusparse-cu12 | 12.1.0.106 | indirect |
| PyPI | nvidia-cusparse-cu12 | 12.3.1.170 | indirect |
| PyPI | nvidia-nccl-cu12 | 2.20.5 | indirect |
| PyPI | nvidia-nccl-cu12 | 2.21.5 | indirect |
| PyPI | nvidia-nvjitlink-cu12 | 12.4.127 | indirect |
| PyPI | nvidia-nvjitlink-cu12 | 12.6.20 | indirect |
| PyPI | nvidia-nvtx-cu12 | 12.1.105 | indirect |
| PyPI | openbabel-wheel | 3.1.1.21 | indirect |
| PyPI | opt-einsum | 3.3.0 | indirect |
| PyPI | optax | 0.2.2 | indirect |
| PyPI | optree | 0.17.0 | indirect |
| PyPI | orbax-checkpoint | 0.5.11 | indirect |
| PyPI | overrides | 7.7.0 | indirect |
| PyPI | packaging | 24.0 | indirect |
| PyPI | packaging | 24.1 | indirect |
| PyPI | pandas | 2.2.2 | indirect |
| PyPI | pandocfilters | 1.5.1 | indirect |
| PyPI | parso | 0.8.4 | indirect |
| PyPI | pdb-tools | 2.5.0 | indirect |
| PyPI | pexpect | 4.9.0 | indirect |
| PyPI | pillow | 10.3.0 | indirect |
| PyPI | pillow | 10.4.0 | indirect |
| PyPI | pip | 24.0 | indirect |
| PyPI | pip | 24.2 | indirect |
| PyPI | platformdirs | 4.2.2 | indirect |
| PyPI | prometheus-client | 0.20.0 | indirect |
| PyPI | prompt-toolkit | 3.0.43 | indirect |
| PyPI | protobuf | 5.26.1 | indirect |
| PyPI | psutil | 5.9.8 | indirect |
| PyPI | psutil | 6.0.0 | indirect |
| PyPI | ptyprocess | 0.7.0 | indirect |
| PyPI | pure-eval | 0.2.2 | indirect |
| PyPI | pyarrow | 18.1.0 | indirect |
| PyPI | pycparser | 2.22 | indirect |
| PyPI | pygments | 2.18.0 | indirect |
| PyPI | pyparsing | 3.1.2 | indirect |
| PyPI | pyscf | 2.9.0 | indirect |
| PyPI | python-dateutil | 2.9.0.post0 | indirect |
| PyPI | python-json-logger | 2.0.7 | indirect |
| PyPI | python-levenshtein | 0.25.1 | indirect |
| PyPI | pytz | 2024.1 | indirect |
| PyPI | pyyaml | 6.0.1 | indirect |
| PyPI | pyyaml | 6.0.2 | indirect |
| PyPI | pyzmq | 26.0.3 | indirect |
| PyPI | qtconsole | 5.5.2 | indirect |
| PyPI | qtpy | 2.4.1 | indirect |
| PyPI | rapidfuzz | 3.9.7 | indirect |
| PyPI | rdkit | 2023.3.2 | indirect |
| PyPI | rdkit | 2023.9.6 | indirect |
| PyPI | referencing | 0.35.1 | indirect |
| PyPI | regex | 2024.11.6 | indirect |
| PyPI | regex | 2024.5.15 | indirect |
| PyPI | requests | 2.31.0 | indirect |
| PyPI | requests | 2.32.3 | indirect |
| PyPI | rfc3339-validator | 0.1.4 | indirect |
| PyPI | rfc3986-validator | 0.1.1 | indirect |
| PyPI | rich | 13.7.1 | indirect |
| PyPI | rpds-py | 0.18.1 | indirect |
| PyPI | safetensors | 0.4.3 | indirect |
| PyPI | safetensors | 0.5.3 | indirect |
| PyPI | scipy | 1.13.0 | indirect |
| PyPI | scipy | 1.13.1 | indirect |
| PyPI | seaborn | 0.13.2 | indirect |
| PyPI | selfies | 2.1.1 | indirect |
| PyPI | send2trash | 1.8.3 | indirect |
| PyPI | setuptools | 69.5.1 | indirect |
| PyPI | setuptools | 72.1.0 | indirect |
| PyPI | six | 1.16.0 | indirect |
| PyPI | sniffio | 1.3.1 | indirect |
| PyPI | soupsieve | 2.5 | indirect |
| PyPI | stack-data | 0.6.3 | indirect |
| PyPI | sympy | 1.13.2 | indirect |
| PyPI | tensorboard | 2.19.0 | indirect |
| PyPI | tensorboard-data-server | 0.7.2 | indirect |
| PyPI | tensorflow-cpu | 2.19.0 | indirect |
| PyPI | tensorflow-io-gcs-filesystem | 0.37.1 | indirect |
| PyPI | tensorstore | 0.1.59 | indirect |
| PyPI | termcolor | 3.1.0 | indirect |
| PyPI | terminado | 0.18.1 | indirect |
| PyPI | tinycss2 | 1.3.0 | indirect |
| PyPI | tokenizers | 0.19.1 | indirect |
| PyPI | tokenizers | 0.21.0 | indirect |
| PyPI | tomli | 2.0.1 | indirect |
| PyPI | toolz | 0.12.1 | indirect |
| PyPI | torch | 2.4.0 | indirect |
| PyPI | torchaudio | 2.4.0 | indirect |
| PyPI | torchvision | 0.19.0 | indirect |
| PyPI | tornado | 6.4 | indirect |
| PyPI | tqdm | 4.66.4 | indirect |
| PyPI | tqdm | 4.66.5 | indirect |
| PyPI | traitlets | 5.14.3 | indirect |
| PyPI | transformers | 4.41.1 | indirect |
| PyPI | transformers | 4.49.0 | indirect |
| PyPI | triton | 3.0.0 | indirect |
| PyPI | types-python-dateutil | 2.9.0.20240316 | indirect |
| PyPI | typing-extensions | 4.11.0 | indirect |
| PyPI | typing-extensions | 4.12.2 | indirect |
| PyPI | tzdata | 2024.1 | indirect |
| PyPI | uri-template | 1.3.0 | indirect |
| PyPI | urllib3 | 2.2.1 | indirect |
| PyPI | urllib3 | 2.2.2 | indirect |
| PyPI | wcwidth | 0.2.13 | indirect |
| PyPI | webcolors | 1.13 | indirect |
| PyPI | webencodings | 0.5.1 | indirect |
| PyPI | websocket-client | 1.8.0 | indirect |
| PyPI | werkzeug | 3.1.3 | indirect |
| PyPI | wheel | 0.43.0 | indirect |
| PyPI | widgetsnbextension | 4.0.10 | indirect |
| PyPI | wrapt | 1.17.2 | indirect |
| PyPI | zipp | 3.18.1 | indirect |
| PyPI | zipp | 3.20.0 | indirect |
Dependency advisories 40
This repository publishes no package the index resolves, so its own dependency graph was assessed — 245 packages, which also include development and test pins that never ship: 40 carry known advisories, of which 0 are direct.
| Package | Version | Relation | Severity | Advisories | Fixed in |
|---|---|---|---|---|---|
| h11 | 0.14.0 | indirect | critical | 2 | 0.16.0 |
| jupyterlab | 4.1.8 | indirect | critical | 16 | 7.5.6 |
| keras | 3.11.0 | indirect | critical | 15 | 3.14.0 |
| notebook | 7.1.3 | indirect | critical | 6 | 7.5.6 |
| pillow | 10.3.0 | indirect | critical | 34 | 12.3.0 |
| pillow | 10.4.0 | indirect | critical | 34 | 12.3.0 |
| torch | 2.4.0 | indirect | critical | 23 | 2.13.0 |
| transformers | 4.41.1 | indirect | critical | 42 | 5.5.0 |
| transformers | 4.49.0 | indirect | critical | 35 | 5.5.0 |
| certifi | 2024.2.2 | indirect | high | 2 | 2024.7.4 |
| jinja2 | 3.1.4 | indirect | high | 6 | 3.1.6 |
| jupyter-core | 5.7.2 | indirect | high | 2 | 5.8.1 |
| jupyter-server | 2.14.0 | indirect | high | 16 | 2.20.0 |
| mistune | 3.0.2 | indirect | high | 30 | 3.3.0 |
| msgpack | 1.0.8 | indirect | high | 1 | 1.2.1 |
| pip | 24.0 | indirect | high | 10 | 26.1.2 |
| pip | 24.2 | indirect | high | 10 | 26.1.2 |
| protobuf | 5.26.1 | indirect | high | 4 | 6.33.5 |
| pyarrow | 18.1.0 | indirect | high | 2 | 23.0.1 |
| setuptools | 69.5.1 | indirect | high | 6 | 83.0.0 |
| setuptools | 72.1.0 | indirect | high | 4 | 83.0.0 |
| soupsieve | 2.5 | indirect | high | 4 | 2.8.4 |
| tornado | 6.4 | indirect | high | 24 | 6.5.7 |
| urllib3 | 2.2.1 | indirect | high | 14 | 2.7.0 |
| urllib3 | 2.2.2 | indirect | high | 12 | 2.7.0 |
| wheel | 0.43.0 | indirect | high | 2 | 0.46.2 |
| biopython | 1.84 | indirect | moderate | 2 | 1.87 |
| biopython | 1.85 | indirect | moderate | 2 | 1.87 |
| bleach | 6.1.0 | indirect | moderate | 2 | 6.4.0 |
| filelock | 3.14.0 | indirect | moderate | 4 | 3.20.3 |
| filelock | 3.15.4 | indirect | moderate | 4 | 3.20.3 |
| fonttools | 4.51.0 | indirect | moderate | 2 | 4.60.2 |
| fonttools | 4.53.1 | indirect | moderate | 2 | 4.60.2 |
| idna | 3.7 | indirect | moderate | 2 | 3.15 |
| nbconvert | 7.16.4 | indirect | moderate | 6 | 7.17.1 |
| requests | 2.31.0 | indirect | moderate | 6 | 2.33.0 |
| requests | 2.32.3 | indirect | moderate | 4 | 2.33.0 |
| werkzeug | 3.1.3 | indirect | moderate | 6 | 3.1.6 |
| zipp | 3.18.1 | indirect | moderate | 2 | 3.19.1 |
| pygments | 2.18.0 | indirect | low | 2 | 2.20.0 |
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
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"points": 0,
"status": "missed",
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},
{
"key": "documentation_homepage_site",
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{
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{
"key": "wiki",
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"points": 10,
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}
]
}
],
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{
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"value": 21,
"weight": 0.16,
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"band": "critical",
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"note": null,
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"value": 1,
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],
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},
"components": [
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"detail": null,
"points": 0,
"status": "missed",
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},
{
"key": "dependabot_config",
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}
]
},
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"notes": [
{
"code": "excluded_no_data",
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},
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},
{
"code": "advisories_reachability",
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}
],
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"affected_packages": 40,
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"affected_by_severity": "critical 9, high 17, moderate 13, low 1",
"direct_affected_packages": 0
},
"components": [
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"key": "direct_dependencies_free_of_known_advisories",
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"points": 35,
"status": "met",
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}
],
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{
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],
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]
},
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"note": null,
"notes": [],
"value": 100,
"inputs": {
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"components": [
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"points": 100,
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"details": [
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"code": "no_malicious_dependencies",
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}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
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"name": "AI Readiness",
"value": 24,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
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"note": null,
"notes": [],
"value": 1,
"inputs": {
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"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
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"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "legible_commit_history",
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"detail": "0 of 37 human commits state their intent (structured subject or explanatory body)",
"points": 0,
"status": "missed",
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"code": "legible_history",
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}
],
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]
},
{
"key": "ai_verify_loop",
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"note": null,
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},
"components": [
{
"key": "one_command_bootstrap",
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"points": 0,
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},
{
"key": "automated_tests",
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"detail": null,
"points": 22,
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},
{
"key": "lint_format_config",
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"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "static_type_checking",
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"detail": null,
"points": 0,
"status": "missed",
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{
"key": "reproducible_environment",
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"detail": null,
"points": 0,
"status": "missed",
"details": [],
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},
{
"key": "demonstrated_agent_practice",
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"points": 0,
"status": "missed",
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"code": "no_agent_authored_commits",
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],
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{
"key": "automated_maintenance",
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"points": 0,
"status": "missed",
"details": [
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"code": "no_dependency_automation",
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}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "OpenSSF Scorecard unavailable",
"points": 0,
"status": "excluded",
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"code": "no_data",
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},
{
"key": "ai_code_legibility",
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"components": [
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"points": 0,
"status": "missed",
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"code": "no_typecheck_config_language",
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{
"key": "manageable_file_sizes",
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"points": 55,
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]
},
{
"key": "ai_interfaces",
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"note": null,
"notes": [],
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"has_mcp_signal": false,
"api_schema_files": []
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"components": [
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"key": "api_schema_openapi_graphql_proto",
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"detail": null,
"points": 0,
"status": "missed",
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{
"key": "mcp_server",
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"points": 0,
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{
"key": "runnable_examples",
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"code": "file_list",
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],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
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"OpenSSF Scorecard did not return a usable result (exit code -9); skipping Scorecard checks"
],
"report_type": "repository",
"generated_at": "2026-07-28T15:11:12.407153Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/e/egg5154/MolSculptor.svg",
"full_name": "egg5154/MolSculptor",
"license_state": "standard",
"license_spdx": "Apache-2.0"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics.