Public recordModerate
Software health reportschema 0.34.0 · metrics 2.10.0 · 2026-10-22 14:01 UTC
egonw / bacting
Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.
egonw/bacting holds a health index of 57 out of 100, placing it in the Moderate band. It scores highest on Vitality (81/100) and lowest on Security (21/100). It was last updated 1 day ago. A single contributor accounts for most of its recent work.
57
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.
57
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
The weighted overall 55 is calibrated to 57 on the published index scale (record calibration 2026-08-02).
Ownership
Egon WillighagenPersonal account
322 followers670 public repossince Sep 2008@TGX-UM
This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish |
|---|---|---|---|---|---|
| Maven | io.github.egonw.bacting:bacting-bundle | 1.0.14 | - | 51 | 1 day ago |
| Maven | io.github.egonw.bacting:bacting-core | 1.0.14 | - | 64 | 1 day ago |
| Maven | io.github.egonw.bacting:managers-excel | 1.0.14 | - | 66 | 1 day ago |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
81
Development activity
73Good
How it's scored
| 36/36 | Push recency — last push 1 days ago |
| 11.8/36 | Commit cadence — 17/52 weeks with commits |
| 17.7/18 | Commit volume — 92 commits in the last year |
| 0/10 | OpenSSF Scorecard: Maintained — no data |
Inputs used
| commits_last_year | 92 |
| human_commit_share | 1 |
| days_since_last_push | 1 |
| active_weeks_last_year | 17 |
Release discipline
92Excellent
How it's scored
| 27/27 | Ships releases — 72 releases published |
| 36/36 | Release recency — latest release 1 days ago |
| 19.8/27 | Release cadence — a release every ~63.3 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 72 |
| latest_release_tag | bacting-1.0.14 |
| releases_from_tags | no |
| days_since_latest_release | 1 |
| mean_days_between_releases | 63.3 |
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
56
Popularity & adoption
30At Risk
How it's scored
| 21.8/60 | Stars — 23 stars |
| 5/25 | Forks — 5 forks |
| 2.7/15 | Watchers — 4 watchers |
Inputs used
| forks | 5 |
| stars | 23 |
| watchers | 4 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
86Excellent
How it's scored
| 22.5/22.5 | README |
| 16.9/22.5 | License — license file present, not a recognized license |
| 18/18 | CONTRIBUTING guide |
| 13.5/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 6.3/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| readme_badges | 4 |
| has_contributing | yes |
| has_issue_template | no |
| has_code_of_conduct | yes |
| readme_badge_services | codecov.io, github.com, shields.io |
| has_pull_request_template | yes |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
56
Maintainer resilience (bus factor)
15Critical
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 0.1/22.5 | Commit distribution — top contributor authored 100% of commits |
| 4.1/13.5 | Contributor breadth — 3 contributors |
| 0/10 | OpenSSF Scorecard: Contributors — no data |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 3 |
| top_contributor_share | 0.997 |
Issue & PR responsiveness
60Moderate
How it's scored
| 29.1/42 | Issue resolution — 69% of issues closed |
| 13.9/30 | PR acceptance — 38/82 decided PRs merged |
| 0/13 | Newcomer PR acceptance — no first-time contributor's PR decided in 30d |
| 0/15 | OpenSSF Scorecard: Code-Review — no data |
Inputs used
| merged_prs | 38 |
| open_issues | 19 |
| closed_issues | 43 |
| prs_merged_7d | 1 |
| prs_decided_7d | 1 |
| prs_merged_30d | 1 |
| prs_decided_30d | 1 |
| issue_closed_ratio | 0.694 |
| closed_unmerged_prs | 44 |
| first_time_authors_30d | 0 |
| first_time_prs_merged_30d | 0 |
| first_time_prs_decided_30d | 0 |
Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.
Ownership & stewardship
66Good
How it's scored
| 10/30 | Ownership backing — personal (user) account |
| 0/20 | Verified domain — not applicable to user accounts |
| 18/25 | Owner reach — 322 followers of egonw |
| 25/25 | Track record — 670 public repos, account ~18 yr old |
Inputs used
| followers | 322 |
| owner_type | User |
| is_verified | — |
| owner_login | egonw |
| public_repos | 670 |
| account_age_days | 6,597 |
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.
Package maintenance
100Exceptional
How it's scored
| 25/25 | Published & resolvable — 3 package(s) on maven |
| 35/35 | Publish recency — latest publish 1 days ago |
| 20/20 | Version history — 66 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | io.github.egonw.bacting:bacting-bundle, io.github.egonw.bacting:bacting-core, io.github.egonw.bacting:managers-excel |
| ecosystems | maven |
| any_deprecated | no |
| min_days_since_publish | 1 |
Engineering Quality
Are baseline engineering and documentation practices in place?
56
Engineering practices
60Moderate
How it's scored
| 24/24 | CI workflows — 1 workflow(s) |
| 24/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Documentation
50Moderate
How it's scored
| 30/30 | README |
| 0/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 10/10 | Repository description |
| 10/10 | Topics — 7 topics |
| 0/10 | Wiki |
Inputs used
| topics | cheminformatics, bioinformatics, rdf, bioclipse, excel, blueobelisk, hacktoberfest |
| has_wiki | no |
| homepage | — |
| docs_site | — |
| has_readme | yes |
| has_docs_dir | no |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
21
Security posture
1Critical
How it's scored
| 0/30 | Security policy (SECURITY.md) |
| 0/25 | Dependabot config |
| 0/25 | Dependency lockfiles — published library — lockfiles are an application concern, not expected |
| 0/20 | CodeQL workflow |
Inputs used
| source | file_signals |
| lockfiles | — |
| manifests | bacting-core/pom.xml, bundle/pom.xml, managers-bioinfo/pom.xml, managers-cheminfo/pom.xml, managers-core/pom.xml, managers-excel/pom.xml, managers-search/pom.xml, managers-semweb/pom.xml, pom.xml |
| has_codeql_workflow | no |
| has_security_policy | no |
| has_dependabot_config | no |
Excluded from scoring (no data or not applicable): Dependency lockfiles. Remaining weights renormalized.
Dependency advisories
100Exceptional
How it's scored
| 35/35 | Direct dependencies free of known advisories — no direct dependency carries a known advisory |
| 0/25 | Indirect dependencies free of known advisories — transitive set not separable from development and test dependencies in this scope |
| 0/40 | No advisories left outstanding — no advisory carries a publication date |
Inputs used
| source | osv |
| advisories | 34 |
| affected_packages | 11 |
| assessed_packages | 256 |
| unassessed_packages | 0 |
| affected_by_severity | critical 1, high 5, moderate 2, low 3 |
| direct_affected_packages | 0 |
Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 256 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.
42
Agent context & guidance
1Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 0/40 | Legible commit history — 0 of 100 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| llms_txt_url | — |
| legible_history_share | 0 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Verify loop (build / test / typecheck)
51Moderate
How it's scored
| 12.6/18 | One-command bootstrap — bacting-core/pom.xml, bundle/pom.xml, managers-bioinfo/net.bioclipse.managers.biojava/pom.xml (toolchain convention, no task runner) |
| 22/22 | Automated tests |
| 0/11 | Lint / format config |
| 11/11 | Static type checking — Java (statically typed) |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no agent-authored commits among the last 100 |
| 0/8 | Automated maintenance — no automated dependency updates observed |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — no data |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | yes |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | bacting-core/pom.xml, bundle/pom.xml, managers-bioinfo/net.bioclipse.managers.biojava/pom.xml, managers-bioinfo/net.bioclipse.managers.bridgedb/pom.xml, managers-bioinfo/net.bioclipse.managers.libgpml/pom.xml, managers-bioinfo/pom.xml, managers-cheminfo/net.bioclipse.managers.cdk/pom.xml, managers-cheminfo/net.bioclipse.managers.cdkdebug/pom.xml, managers-cheminfo/net.bioclipse.managers.chemspider/pom.xml, managers-cheminfo/net.bioclipse.managers.inchi/pom.xml, managers-cheminfo/net.bioclipse.managers.nm/pom.xml, managers-cheminfo/net.bioclipse.managers.opsin/pom.xml, managers-cheminfo/net.bioclipse.managers.oscar/pom.xml, managers-cheminfo/net.bioclipse.managers.pubchem/pom.xml, managers-cheminfo/pom.xml, managers-core/managers-jsoup/pom.xml, managers-core/managers-ui/pom.xml, managers-core/pom.xml, managers-excel/pom.xml, managers-search/managers-doi/pom.xml, managers-search/managers-find/pom.xml, managers-search/managers-pubmed/pom.xml, managers-search/managers-zenodo/pom.xml, managers-search/net.bioclipse.managers.duckduckgo/pom.xml, managers-search/net.bioclipse.managers.mwmbl/pom.xml, managers-search/pom.xml, managers-semweb/managers-rdf/pom.xml, managers-semweb/managers-xml/pom.xml, managers-semweb/net.bioclipse.managers.wikidata/pom.xml, managers-semweb/pom.xml, pom.xml |
| dependency_bot_commit_share | 0 |
Code legibility for models
100Exceptional
How it's scored
| 45/45 | Type-checkable code — Java (statically typed) |
| 55/55 | Manageable file sizes — 0/68 source files over 60KB |
Inputs used
| primary_language | Java |
| largest_source_bytes | 30,961 |
| source_files_sampled | 68 |
| oversized_source_files | 0 |
Key facts
23GitHub stars
3contributors
92commits, last 12 months
1days since last push
72releases
1bus factor
19open issues
Mavenpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- deps.dev does not index maven:io.github.egonw.bacting:bacting-bundle@1.0.14; advisories assessed against the repository dependency graph instead
- OpenSSF Scorecard did not return a usable result (exit code 0; Skipping github.com/egonw/bacting: run: internal error: ListCommits:error during graphqlHandler.setup: internal error: githubv4.Query: Something went wrong while executing your query on 2026-10-22T14:01:29Z. Please include `B688:E2C2:78869E7:AF5B1F6:6ADA1737` when reporting this issue.); skipping Scorecard checks
More detail
Star and fork history 0 ★ / 5 ⇿
0Stars
5Forks
51Releases
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Major 0Minor 0Patch 0
Each point covers 5 days.
Direct dependencies 19
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| Maven | io.github.egonw.bacting:bioclipse-core | ${bioclipse.version} | bacting-core/pom.xml |
| Maven | io.github.egonw.bacting:bacting-core | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-ui | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-rdf | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-xml | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:net.bioclipse.managers.wikidata | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-bridgedb | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-biojava | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-cdk | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-cdkdebug | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-chemspider | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-inchi | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-opsin | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-oscar | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-pubchem | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:managers-excel | 1.0.14 | bundle/pom.xml |
| Maven | io.github.egonw.bacting:bacting-core | 1.0.14 | managers-excel/pom.xml |
| Maven | org.apache.poi:poi-ooxml | 5.5.1 | managers-excel/pom.xml |
| Maven | org.apache.logging.log4j:log4j-core | ${log4j.version} | managers-excel/pom.xml |
All dependencies 256
Full resolved dependency set from the GitHub dependency graph: 20 direct and 236 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| Maven | io.github.egonw.bacting:bacting-core | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:bioclipse-core | 2.8.2.1 | direct |
| Maven | io.github.egonw.bacting:managers-biojava | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-bridgedb | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-cdk | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-cdkdebug | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-chemspider | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-excel | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-inchi | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-opsin | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-oscar | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-pubchem | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-rdf | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-ui | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:managers-xml | 1.0.13 | direct |
| Maven | io.github.egonw.bacting:net.bioclipse.managers.wikidata | 1.0.13 | direct |
| Maven | org.apache.logging.log4j:log4j-core | 2.25.4 | direct |
| Maven | org.apache.logging.log4j:log4j-core | 2.26.0 | direct |
| Maven | org.apache.logging.log4j:log4j-core | 2.26.1 | direct |
| Maven | org.apache.poi:poi-ooxml | 5.5.1 | direct |
| Maven | com.apicatalog:titanium-jcs | 1.1.1 | indirect |
| Maven | com.apicatalog:titanium-json-ld | 1.7.0 | indirect |
| Maven | com.apicatalog:titanium-rdf-api | 1.0.0 | indirect |
| Maven | com.apicatalog:titanium-rdf-n-quads | 1.0.2 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-annotations | 2.21 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-annotations | 2.22 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-core | 2.21.1 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-core | 2.22.1 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-databind | 2.21.1 | indirect |
| Maven | com.fasterxml.jackson.core:jackson-databind | 2.22.1 | indirect |
| Maven | com.fasterxml.woodstox:woodstox-core | 7.2.2 | indirect |
| Maven | com.github.andrewoma.dexx:collection | 0.7 | indirect |
| Maven | com.github.ben-manes.caffeine:caffeine | 3.2.3 | indirect |
| Maven | com.github.egonw:jqudt | 1.5.2 | indirect |
| Maven | com.github.egonw:jqudt | 1.5.3 | indirect |
| Maven | com.github.jsonld-java:jsonld-java | 0.13.4 | indirect |
| Maven | com.github.virtuald:curvesapi | 1.08 | indirect |
| Maven | com.google.code.gson:gson | 2.13.2 | indirect |
| Maven | com.google.errorprone:error_prone_annotations | 2.41.0 | indirect |
| Maven | com.google.errorprone:error_prone_annotations | 2.50.0 | indirect |
| Maven | com.google.guava:failureaccess | 1.0.3 | indirect |
| Maven | com.google.guava:guava | 33.7.1-jre | indirect |
| Maven | com.google.guava:listenablefuture | 9999.0-empty-to-avoid-conflict-with-guava | indirect |
| Maven | com.google.j2objc:j2objc-annotations | 3.1 | indirect |
| Maven | com.google.protobuf:protobuf-java | 4.31.1 | indirect |
| Maven | com.google.protobuf:protobuf-java | 4.34.1 | indirect |
| Maven | com.mysql:mysql-connector-j | 9.5.0 | indirect |
| Maven | com.zaxxer:SparseBitSet | 1.3 | indirect |
| Maven | commons-codec:commons-codec | 1.15 | indirect |
| Maven | commons-codec:commons-codec | 1.20.0 | indirect |
| Maven | commons-codec:commons-codec | 1.22.0 | indirect |
| Maven | commons-dbcp:commons-dbcp | 1.4 | indirect |
| Maven | commons-io:commons-io | 2.21.0 | indirect |
| Maven | commons-io:commons-io | 2.22.0 | indirect |
| Maven | commons-lang:commons-lang | 2.6 | indirect |
| Maven | commons-logging:commons-logging | 1.4.0 | indirect |
| Maven | commons-pool:commons-pool | 1.5.4 | indirect |
| Maven | dk.brics.automaton:automaton | 1.11-8 | indirect |
| Maven | dk.brics:automaton | 1.12-4 | indirect |
| Maven | gov.nist.math:jama | 1.0.3 | indirect |
| Maven | info.picocli:picocli | 4.7.7 | indirect |
| Maven | io.github.dan2097:jna-inchi-api | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-core | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-darwin-aarch64 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-darwin-x86-64 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-linux-aarch64 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-linux-arm | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-linux-x86 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-linux-x86-64 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-win32-x86 | 1.3.1 | indirect |
| Maven | io.github.dan2097:jna-inchi-win32-x86-64 | 1.3.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-bridgedb | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-cdkbusiness | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-inchi | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-rdf | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-rdfcore | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:bioclipse-report | 2.8.2.1 | indirect |
| Maven | io.github.egonw.bacting:net.bioclipse.managers.jsoup | 1.0.13 | indirect |
| Maven | io.github.egonw:nanojava | 2.0.7 | indirect |
| Maven | javax.vecmath:vecmath | 1.5.2 | indirect |
| Maven | joda-time:joda-time | 2.14.1 | indirect |
| Maven | joda-time:joda-time | 2.14.2 | indirect |
| Maven | net.htmlparser.jericho:jericho-html | 3.4 | indirect |
| Maven | net.java.dev.jna:jna | 5.10.0 | indirect |
| Maven | no.hasmac:hasmac-json-ld | 0.10.2 | indirect |
| Maven | org.apache.commons:commons-collections4 | 4.5.0 | indirect |
| Maven | org.apache.commons:commons-compress | 1.28.0 | indirect |
| Maven | org.apache.commons:commons-csv | 1.14.1 | indirect |
| Maven | org.apache.commons:commons-lang3 | 3.18.0 | indirect |
| Maven | org.apache.commons:commons-lang3 | 3.20.0 | indirect |
| Maven | org.apache.commons:commons-math | 2.2 | indirect |
| Maven | org.apache.commons:commons-math3 | 3.6.1 | indirect |
| Maven | org.apache.derby:derby | 10.15.2.0 | indirect |
| Maven | org.apache.derby:derbyclient | 10.15.2.0 | indirect |
| Maven | org.apache.derby:derbyshared | 10.15.2.0 | indirect |
| Maven | org.apache.derby:derbytools | 10.15.2.0 | indirect |
| Maven | org.apache.httpcomponents.client5:httpclient5 | 5.6.2 | indirect |
| Maven | org.apache.httpcomponents.core5:httpcore5 | 5.4.3 | indirect |
| Maven | org.apache.httpcomponents.core5:httpcore5-h2 | 5.4.3 | indirect |
| Maven | org.apache.jena:jena-arq | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-base | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-core | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-dboe-base | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-dboe-index | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-dboe-storage | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-dboe-trans-data | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-dboe-transaction | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-iri3986 | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-langtag | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-shex | 6.1.0 | indirect |
| Maven | org.apache.jena:jena-tdb2 | 6.1.0 | indirect |
| Maven | org.apache.logging.log4j:log4j | 2.25.4 | indirect |
| Maven | org.apache.logging.log4j:log4j | 2.26.0 | indirect |
| Maven | org.apache.logging.log4j:log4j-1.2-api | 2.25.4 | indirect |
| Maven | org.apache.logging.log4j:log4j-1.2-api | 2.26.0 | indirect |
| Maven | org.apache.logging.log4j:log4j-api | 2.25.1 | indirect |
| Maven | org.apache.logging.log4j:log4j-api | 2.25.4 | indirect |
| Maven | org.apache.logging.log4j:log4j-api | 2.26.0 | indirect |
| Maven | org.apache.logging.log4j:log4j-api | 2.26.1 | indirect |
| Maven | org.apache.opennlp:opennlp-maxent | 3.0.3 | indirect |
| Maven | org.apache.poi:poi | 5.5.1 | indirect |
| Maven | org.apache.poi:poi-ooxml-lite | 5.5.1 | indirect |
| Maven | org.apache.servicemix.bundles:org.apache.servicemix.bundles.jdom | 2.0.6.1_1 | indirect |
| Maven | org.apache.thrift:libthrift | 0.22.0 | indirect |
| Maven | org.apache.xmlbeans:xmlbeans | 5.3.0 | indirect |
| Maven | org.apiguardian:apiguardian-api | 1.1.2 | indirect |
| Maven | org.biojava:bytecode | 1.9.7 | indirect |
| Maven | org.biojava:core | 1.9.7 | indirect |
| Maven | org.biojava:sequencing | 1.9.7 | indirect |
| Maven | org.blueobelisk:cmlxom | 4.17 | indirect |
| Maven | org.blueobelisk:cmlxom | 4.19 | indirect |
| Maven | org.blueobelisk:euclid | 2.16 | indirect |
| Maven | org.blueobelisk:euclid | 2.19 | indirect |
| Maven | org.bridgedb.webservice:org.bridgedb.webservice.bridgerest | 3.1.6 | indirect |
| Maven | org.bridgedb:org.bridgedb | 3.1.4 | indirect |
| Maven | org.bridgedb:org.bridgedb | 3.1.6 | indirect |
| Maven | org.bridgedb:org.bridgedb.bio | 3.1.6 | indirect |
| Maven | org.bridgedb:org.bridgedb.rdb | 3.1.6 | indirect |
| Maven | org.ccil.cowan.tagsoup:tagsoup | 1.2.1 | indirect |
| Maven | org.codehaus.woodstox:stax2-api | 4.3.0 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.contenttype | 3.9.200 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.expressions | 3.9.200 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.filesystem | 1.10.200 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.jobs | 3.15.100 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.resources | 3.20.0 | indirect |
| Maven | org.eclipse.platform:org.eclipse.core.runtime | 3.30.0 | indirect |
| Maven | org.eclipse.platform:org.eclipse.equinox.app | 1.6.400 | indirect |
| Maven | org.eclipse.platform:org.eclipse.equinox.common | 3.18.200 | indirect |
| Maven | org.eclipse.platform:org.eclipse.equinox.preferences | 3.10.400 | indirect |
| Maven | org.eclipse.platform:org.eclipse.equinox.registry | 3.11.400 | indirect |
| Maven | org.eclipse.platform:org.eclipse.osgi | 3.18.600 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-annotation | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-annotation | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-exception | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-exception | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-io | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-io | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-iterator | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-iterator | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-order | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-order | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-text | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-text | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-xml | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-common-xml | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model-api | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model-api | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model-vocabulary | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-model-vocabulary | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-api | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-api | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-datatypes | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-datatypes | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-languages | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-languages | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-rdfxml | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-rdfxml | 5.3.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-turtle | 5.2.2 | indirect |
| Maven | org.eclipse.rdf4j:rdf4j-rio-turtle | 5.3.2 | indirect |
| Maven | org.freehep:freehep-graphics2d | 2.4 | indirect |
| Maven | org.freehep:freehep-graphicsbase | 2.4 | indirect |
| Maven | org.freehep:freehep-graphicsio | 2.4 | indirect |
| Maven | org.freehep:freehep-graphicsio-pdf | 2.4 | indirect |
| Maven | org.freehep:freehep-graphicsio-ps | 2.4 | indirect |
| Maven | org.freehep:freehep-graphicsio-tests | 2.4 | indirect |
| Maven | org.freehep:freehep-io | 2.2.2 | indirect |
| Maven | org.glassfish:jakarta.json | 2.0.1 | indirect |
| Maven | org.json:json | 20260814 | indirect |
| Maven | org.jsoup:jsoup | 1.23.2 | indirect |
| Maven | org.jspecify:jspecify | 1.0.0 | indirect |
| Maven | org.jspecify:jspecify | 1.0.1 | indirect |
| Maven | org.junit.jupiter:junit-jupiter | 6.1.3 | indirect |
| Maven | org.junit.jupiter:junit-jupiter-api | 6.1.3 | indirect |
| Maven | org.junit.jupiter:junit-jupiter-engine | 6.1.3 | indirect |
| Maven | org.junit.jupiter:junit-jupiter-params | 6.1.3 | indirect |
| Maven | org.junit.platform:junit-platform-commons | 6.1.3 | indirect |
| Maven | org.junit.platform:junit-platform-engine | 6.1.3 | indirect |
| Maven | org.openscience.cdk:cdk-atomtype | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-core | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-core | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-ctab | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-ctab | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-data | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-depict | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-dict | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-dict | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-diff | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-extra | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-formula | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-formula | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-inchi | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-interfaces | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-io | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-ioformats | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-ioformats | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-isomorphism | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-isomorphism | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-jniinchi-support | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-libiocml | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-render | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-renderawt | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-renderbasic | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-sdg | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-silent | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-smarts | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-smiles | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-standard | 2.12 | indirect |
| Maven | org.openscience.cdk:cdk-standard | 2.13 | indirect |
| Maven | org.openscience.cdk:cdk-valencycheck | 2.12 | indirect |
| Maven | org.opentest4j:opentest4j | 1.3.0 | indirect |
| Maven | org.osgi:org.osgi.service.prefs | 1.1.2 | indirect |
| Maven | org.osgi:osgi.annotation | 8.0.1 | indirect |
| Maven | org.pathvisio:org.pathvisio.libgpml | 4.0.4 | indirect |
| Maven | org.roaringbitmap:RoaringBitmap | 1.6.14 | indirect |
| Maven | org.slf4j:jcl-over-slf4j | 2.0.17 | indirect |
| Maven | org.slf4j:slf4j-api | 2.1.0-alpha1 | indirect |
| Maven | org.slf4j:slf4j-simple | 2.1.0-alpha1 | indirect |
| Maven | uk.ac.cam.ch.opsin:opsin-core | 2.9.0 | indirect |
| Maven | uk.ac.cam.ch.opsin:opsin-inchi | 2.9.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-api | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-chemnamedict | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-core | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-memmrecogniser | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-obo | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-opsin | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-patternrecogniser | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-recogniser-core | 5.3.0 | indirect |
| Maven | uk.ac.cam.ch.wwmm.oscar:oscar4-tokenizer | 5.3.0 | indirect |
| Maven | uk.ac.ebi.beam:beam-core | 1.3.10 | indirect |
| Maven | uk.ac.ebi.beam:beam-func | 1.3.10 | indirect |
| Maven | xerces:xercesImpl | 2.12.2 | indirect |
| Maven | xml-apis:xml-apis | 1.4.01 | indirect |
| Maven | xom:xom | 1.3.9 | indirect |
| Maven | xom:xom | 1.4.6 | indirect |
Dependency advisories 11
This repository publishes no package the index resolves, so its own dependency graph was assessed — 256 packages, which also include development and test pins that never ship: 11 carry known advisories, of which 0 are direct.
| Package | Version | Relation | Severity | Advisories | Fixed in |
|---|---|---|---|---|---|
| org.apache.derby:derby | 10.15.2.0 | indirect | critical | 1 | 10.16.1.2 |
| com.fasterxml.jackson.core:jackson-core | 2.21.1 | indirect | high | 3 | 3.2.3 |
| com.fasterxml.jackson.core:jackson-core | 2.22.1 | indirect | high | 2 | 3.2.3 |
| com.fasterxml.jackson.core:jackson-databind | 2.21.1 | indirect | high | 16 | 3.2.3 |
| com.fasterxml.jackson.core:jackson-databind | 2.22.1 | indirect | high | 5 | 3.2.3 |
| org.apache.thrift:libthrift | 0.22.0 | indirect | high | 2 | 0.24.0 |
| commons-lang:commons-lang | 2.6 | indirect | moderate | 1 | 3.18.0 |
| org.apache.httpcomponents.client5:httpclient5 | 5.6.2 | indirect | moderate | 1 | 5.6.3 |
| org.apache.logging.log4j:log4j-api | 2.25.1 | indirect | low | 1 | 2.26.1 |
| org.apache.logging.log4j:log4j-api | 2.25.4 | indirect | low | 1 | 2.26.1 |
| org.apache.logging.log4j:log4j-api | 2.26.0 | indirect | low | 1 | 2.26.1 |
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
Feedback
Spotted something off in this report, or have thoughts to share? Wrong measurements, missed tooling, ideas, questions — anything is welcome. Every message is read and gets a response.
Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.10.0, schema v0.34.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — Maven.