Public record
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-23 23:09 UTC

ihmeuw / vivarium-suite

Vivarium simulation framework and tools monorepo

PythonBSD-3-Clause★ 2 stars⑂ 0 forkssince Apr 2026View on GitHub ↗

ihmeuw/vivarium-suite holds a health index of 67 out of 100, placing it in the Moderate band. It scores highest on Vitality (94/100) and lowest on Community & Adoption (36/100). It was last updated today. 3 contributors account for most of its recent work.

67
overall / 100
Moderate

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.

67
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

Ownership

Institute for Health Metrics and EvaluationOrganization
170 followers203 public repossince Jun 2013

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publish
PyPIvivarium-engine5.5.3-250 days ago
PyPIvivarium-artifact1.0.8-90 days ago
PyPIvivarium-profiling0.5.3-227 days ago
PyPIvivarium-validation0.1.2-30 days ago
PyPIvivarium-build-utils4.4.2-650 days ago
PyPIvivarium-config-tree5.0.12-130 days ago
PyPIvivarium-gbd-mapping6.0.7-80 days ago
PyPIvivarium-dependencies1.2.4-178 days ago

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

94Excellent · 22% of overall

Development activity

90Excellent
How it's scored
36/36Push recency — last push 0 days ago
36/36Commit cadence — 52/52 weeks with commits
18/18Commit volume — 915 commits in the last year
0/10OpenSSF Scorecard: Maintained — project was created within the last 90 days. Please review its contents carefully
Inputs used
commits_last_year915
human_commit_share1
days_since_last_push0
active_weeks_last_year52

Release discipline

100Excellent
How it's scored
27/27Ships releases — 100 releases published
36/36Release recency — latest release 0 days ago
27/27Release cadence — a release every ~0 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count100
latest_release_tagvivarium-fuzzy-checker-v0.2.1
releases_from_tagsno
days_since_latest_release0
mean_days_between_releases0
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

36At risk · 18% of overall

Popularity & adoption

1Critical
How it's scored
0/60Stars — 2 stars
0/25Forks — 0 forks
0/15Watchers — 0 watchers
Inputs used
forks0
stars2
watchers0
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

77Good
How it's scored
22.5/22.5README
22.5/22.5License — recognized license (BSD-3-Clause)
18/18CONTRIBUTING guide
0/13.5Code of conduct
0/7.2Issue template
6.3/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
has_contributingyes
has_issue_templateno
has_code_of_conductno
has_pull_request_templateyes

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

82Good · 24% of overall

Maintainer resilience (bus factor)

77Good
How it's scored
36/54Bus factor — 3 contributor(s) cover half of all commits
17.7/22.5Commit distribution — top contributor authored 22% of commits
13.5/13.5Contributor breadth — 21 contributors
10/10OpenSSF Scorecard: Contributors — project has 6 contributing companies or organizations
Inputs used
bus_factor3
contributors_sampled21
top_contributor_share0.215

Issue & PR responsiveness

83Good
How it's scored
0/46.8Issue resolution — no issues or no data
33.7/38.3PR acceptance — 194/220 decided PRs merged
10.5/15OpenSSF Scorecard: Code-Review — Found 8/11 approved changesets -- score normalized to 7
Inputs used
merged_prs194
open_issues0
closed_issues0
issue_closed_ratio—
closed_unmerged_prs26
Excluded from scoring (no data or not applicable): Issue resolution. Remaining weights renormalized.

Ownership & stewardship

71Good
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
16.1/25Owner reach — 170 followers of ihmeuw
25/25Track record — 203 public repos, account ~13 yr old
Inputs used
followers170
owner_typeOrganization
is_verified—
owner_loginihmeuw
public_repos203
account_age_days4,789

Package maintenance

100Excellent
How it's scored
25/25Published & resolvable — 8 package(s) on pypi
35/35Publish recency — latest publish 0 days ago
20/20Version history — 65 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesvivarium-engine, vivarium-artifact, vivarium-profiling, vivarium-validation, vivarium-build-utils, vivarium-config-tree, vivarium-gbd-mapping, vivarium-dependencies
ecosystemspypi
any_deprecatedno
min_days_since_publish0

Engineering Quality

Are baseline engineering and documentation practices in place?

61Moderate · 20% of overall

Engineering practices

68Moderate
How it's scored
24/24CI workflows — 5 workflow(s)
24/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
0/6.4.editorconfig
20/20OpenSSF Scorecard: CI-Tests — 11 out of 11 merged PRs checked by a CI test -- score normalized to 10
Inputs used
has_ciyes
has_testsyes
has_editorconfigno
has_linter_configno
has_precommit_configno

Documentation

50Moderate
How it's scored
30/30README
0/25Documentation directory
0/15Documentation / homepage site
10/10Repository description
0/10Topics
10/10Wiki
Inputs used
topics—
has_wikiyes
homepage—
has_readmeyes
has_docs_dirno
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

48At risk · 16% of overall

Security posture

48At risk
How it's scored
7.5/7.5Binary-Artifacts — no binaries found in the repo
3.8/7.5Branch-Protection — branch protection is not maximal on development and all release branches
2.5/2.5CI-Tests — 11 out of 11 merged PRs checked by a CI test -- score normalized to 10
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
5.2/7.5Code-Review — Found 8/11 approved changesets -- score normalized to 7
2.5/2.5Contributors — project has 6 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5License — license file detected
0/7.5Maintained — project was created within the last 90 days. Please review its contents carefully
5/5Packaging — packaging workflow detected
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — no data
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated17
scorecard_versionv5.5.0
checks_inconclusive1
scorecard_aggregate4.8
Excluded from scoring (no data or not applicable): signed_releases. Remaining weights renormalized.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.

68Moderate · 0% of overall

Agent context & guidance

85Excellent
How it's scored
45/45Agent instructions — CLAUDE.md
0/15Machine-readable docs (llms.txt)
40/40Legible commit history — 82 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
legible_history_share0.82
agent_instruction_filesCLAUDE.md
agent_instruction_max_bytes6,633

Verify loop (build / test / typecheck)

61Moderate
How it's scored
18/18One-command bootstrap — libs/artifact/Makefile, libs/artifact/docs/Makefile, libs/build-utils/Makefile, libs/cluster-tools/Makefile, libs/cluster-tools/docs/Makefile, libs/config-tree/Makefile, libs/config-tree/docs/Makefile, libs/dependencies/Makefile, libs/engine/Makefile, libs/engine/docs/Makefile, libs/fuzzy-checker/Makefile, libs/fuzzy-checker/docs/Makefile, libs/gbd-mapping/Makefile, libs/gbd-mapping/docs/Makefile, libs/profiling/Makefile, libs/public-health/Makefile, libs/public-health/docs/Makefile, libs/pytest-vivarium/Makefile, libs/pytest-vivarium/docs/Makefile, libs/risk-distributions/Makefile, libs/risk-distributions/docs/Makefile, libs/validation/Makefile, libs/validation/docs/Makefile
22/22Automated tests
0/11Lint / format config
11/11Static type checking — libs/artifact/src/vivarium/artifact/py.typed, libs/cluster-tools/src/vivarium/cluster_tools/py.typed, libs/config-tree/src/vivarium/config_tree/py.typed, libs/engine/src/vivarium/engine/py.typed, libs/fuzzy-checker/src/vivarium/fuzzy_checker/py.typed, libs/pytest-vivarium/src/pytest_vivarium/py.typed, libs/risk-distributions/src/vivarium/risk_distributions/py.typed, libs/validation/src/vivarium/validation/py.typed
0/10Reproducible environment
10/10Demonstrated agent practice — 33 of the last 100 commits agent-authored or agent-credited
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Inputs used
has_nixno
has_testsyes
lockfiles—
has_dockerfileno
typed_languageno
bootstrap_fileslibs/artifact/Makefile, libs/artifact/docs/Makefile, libs/build-utils/Makefile, libs/cluster-tools/Makefile, libs/cluster-tools/docs/Makefile, libs/config-tree/Makefile, libs/config-tree/docs/Makefile, libs/dependencies/Makefile, libs/engine/Makefile, libs/engine/docs/Makefile, libs/fuzzy-checker/Makefile, libs/fuzzy-checker/docs/Makefile, libs/gbd-mapping/Makefile, libs/gbd-mapping/docs/Makefile, libs/profiling/Makefile, libs/public-health/Makefile, libs/public-health/docs/Makefile, libs/pytest-vivarium/Makefile, libs/pytest-vivarium/docs/Makefile, libs/risk-distributions/Makefile, libs/risk-distributions/docs/Makefile, libs/validation/Makefile, libs/validation/docs/Makefile
has_devcontainerno
has_linter_configno
typecheck_configslibs/artifact/src/vivarium/artifact/py.typed, libs/cluster-tools/src/vivarium/cluster_tools/py.typed, libs/config-tree/src/vivarium/config_tree/py.typed, libs/engine/src/vivarium/engine/py.typed, libs/fuzzy-checker/src/vivarium/fuzzy_checker/py.typed, libs/pytest-vivarium/src/pytest_vivarium/py.typed, libs/risk-distributions/src/vivarium/risk_distributions/py.typed, libs/validation/src/vivarium/validation/py.typed
agent_commit_share0.33
toolchain_manifests—
dependency_bot_commit_share0

Code legibility for models

81Good
How it's scored
27/45Type-checkable code — Python with type-check config (libs/artifact/src/vivarium/artifact/py.typed, libs/cluster-tools/src/vivarium/cluster_tools/py.typed, libs/config-tree/src/vivarium/config_tree/py.typed, libs/engine/src/vivarium/engine/py.typed, libs/fuzzy-checker/src/vivarium/fuzzy_checker/py.typed, libs/pytest-vivarium/src/pytest_vivarium/py.typed, libs/risk-distributions/src/vivarium/risk_distributions/py.typed, libs/validation/src/vivarium/validation/py.typed)
54.2/55Manageable file sizes — 7/485 source files over 60KB
Inputs used
primary_languagePython
largest_source_bytes903,070
source_files_sampled485
oversized_source_files7

Machine-readable interfaces

40At risk
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
0/20MCP server
40/40Runnable examples — examples, notebooks
Inputs used
example_dirsexamples, notebooks
has_mcp_signalno
api_schema_files—

Key facts

2GitHub stars
21contributors
915commits, last 12 months
0days since last push
100releases
3bus factor
0open issues
PyPIpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
  • deps.dev does not index pypi:vivarium-engine@5.5.3; advisories assessed against the repository dependency graph instead

More detail

OpenSSF Scorecard 4.8 / 10
4.8aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-23 23:08 UTC

10Binary-Artifactsno binaries found in the repo
5Branch-Protectionbranch protection is not maximal on development and all release branches
10CI-Tests11 out of 11 merged PRs checked by a CI test -- score normalized to 10
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
7Code-ReviewFound 8/11 approved changesets -- score normalized to 7
10Contributorsproject has 6 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
0Maintainedproject was created within the last 90 days. Please review its contents carefully
10Packagingpackaging workflow detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
n/aSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Direct dependencies 49
RegistryPackageVersion constraintManifest
PyPIvivarium-dependencies—libs/artifact/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/artifact/pyproject.toml
PyPIpackaging—libs/build-utils/pyproject.toml
PyPItomli—libs/build-utils/pyproject.toml
PyPIvivarium-dependencies—libs/cluster-tools/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/cluster-tools/pyproject.toml
PyPIvivarium-engine>=5.1.0libs/cluster-tools/pyproject.toml
PyPIvivarium-config-tree>=5.0.0libs/cluster-tools/pyproject.toml
PyPIdill—libs/cluster-tools/pyproject.toml
PyPIpsutil—libs/cluster-tools/pyproject.toml
PyPIvivarium-dependencies—libs/config-tree/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/config-tree/pyproject.toml
PyPIvivarium-artifact>=1.0.2libs/engine/pyproject.toml
PyPIvivarium-config-tree—libs/engine/pyproject.toml
PyPIvivarium-dependencies—libs/engine/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/engine/pyproject.toml
PyPIdill—libs/engine/pyproject.toml
PyPIvivarium-dependencies—libs/fuzzy-checker/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/fuzzy-checker/pyproject.toml
PyPIvivarium-dependencies—libs/gbd-mapping/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/gbd-mapping/pyproject.toml
PyPIpyyaml—libs/gbd-mapping/pyproject.toml
PyPIvivarium-dependencies—libs/profiling/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/profiling/pyproject.toml
PyPIvivarium-gbd-mapping>=6.0.0libs/profiling/pyproject.toml
PyPIvivarium-engine>=5.1.0libs/profiling/pyproject.toml
PyPIvivarium-public-health>=6.0.0libs/profiling/pyproject.toml
PyPIvivarium-config-tree>=5.0.1libs/profiling/pyproject.toml
PyPIjinja2—libs/profiling/pyproject.toml
PyPIpyyaml—libs/profiling/pyproject.toml
PyPImemory-profiler—libs/profiling/pyproject.toml
PyPImatplotlib—libs/profiling/pyproject.toml
PyPIseaborn—libs/profiling/pyproject.toml
PyPIscalene—libs/profiling/pyproject.toml
PyPInbformat>=5.0libs/profiling/pyproject.toml
PyPIvivarium-dependencies—libs/public-health/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/public-health/pyproject.toml
PyPIvivarium-engine>=5.2.0libs/public-health/pyproject.toml
PyPIvivarium-config-tree>=5.0.0libs/public-health/pyproject.toml
PyPIvivarium-risk-distributions>=3.0.0,<4.0.0libs/public-health/pyproject.toml
PyPIvivarium-dependencies—libs/pytest-vivarium/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/pytest-vivarium/pyproject.toml
PyPIvivarium-config-tree—libs/pytest-vivarium/pyproject.toml
PyPIvivarium-dependencies—libs/risk-distributions/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/risk-distributions/pyproject.toml
PyPIvivarium-dependencies—libs/validation/pyproject.toml
PyPIvivarium-build-utils>=4.0.0,<5.0.0libs/validation/pyproject.toml
PyPIvivarium-config-tree—libs/validation/pyproject.toml
PyPIvivarium-fuzzy-checker—libs/validation/pyproject.toml
All dependencies not collected

The resolved dependency set could not be collected for this report: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository

Raw JSON report machine-readable
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      "pushed_at": "2026-07-23T23:05:40Z",
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        {
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        },
        {
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        },
        {
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        },
        {
          "tag": "vivarium-engine-v5.5.3",
          "kind": "other",
          "published_at": "2026-07-23T23:08:13Z"
        },
        {
          "tag": "vivarium-gbd-mapping-v6.0.7",
          "kind": "other",
          "published_at": "2026-07-23T23:07:03Z"
        },
        {
          "tag": "vivarium-config-tree-v5.0.12",
          "kind": "other",
          "published_at": "2026-07-23T23:06:52Z"
        },
        {
          "tag": "pytest-vivarium-v0.1.0",
          "kind": "other",
          "published_at": "2026-07-23T22:25:48Z"
        },
        {
          "tag": "vivarium-ai-tools-v0.23.1",
          "kind": "other",
          "published_at": "2026-07-23T22:21:50Z"
        },
        {
          "tag": "vivarium-validation-v0.1.1",
          "kind": "other",
          "published_at": "2026-07-22T18:03:13Z"
        },
        {
          "tag": "vivarium-cluster-tools-v4.2.13",
          "kind": "other",
          "published_at": "2026-07-22T17:59:40Z"
        },
        {
          "tag": "vivarium-validation-v0.1.0",
          "kind": "other",
          "published_at": "2026-07-21T20:07:40Z"
        },
        {
          "tag": "vivarium-build-utils-v4.4.1",
          "kind": "other",
          "published_at": "2026-07-21T19:00:55Z"
        },
        {
          "tag": "vivarium-public-health-v6.4.4",
          "kind": "other",
          "published_at": "2026-07-21T18:30:13Z"
        },
        {
          "tag": "vivarium-engine-v5.5.2",
          "kind": "other",
          "published_at": "2026-07-21T18:27:54Z"
        },
        {
          "tag": "vivarium-fuzzy-checker-v0.2.0",
          "kind": "other",
          "published_at": "2026-07-21T18:20:01Z"
        },
        {
          "tag": "vivarium-public-health-v6.4.3",
          "kind": "other",
          "published_at": "2026-07-20T17:47:55Z"
        },
        {
          "tag": "vivarium-engine-v5.5.1",
          "kind": "other",
          "published_at": "2026-07-20T17:45:00Z"
        },
        {
          "tag": "vivarium-fuzzy-checker-v0.1.0",
          "kind": "other",
          "published_at": "2026-07-20T17:40:53Z"
        },
        {
          "tag": "vivarium-engine-v5.5.0",
          "kind": "other",
          "published_at": "2026-07-17T16:43:39Z"
        },
        {
          "tag": "vivarium-public-health-v6.4.2",
          "kind": "other",
          "published_at": "2026-07-16T23:59:17Z"
        },
        {
          "tag": "vivarium-testing-utils-v0.7.6",
          "kind": "other",
          "published_at": "2026-07-16T18:15:01Z"
        },
        {
          "tag": "vivarium-profiling-v0.5.3",
          "kind": "other",
          "published_at": "2026-07-16T17:34:30Z"
        },
        {
          "tag": "vivarium-public-health-v6.4.1",
          "kind": "other",
          "published_at": "2026-07-16T17:33:40Z"
        },
        {
          "tag": "vivarium-public-health-v6.4.0",
          "kind": "other",
          "published_at": "2026-07-15T17:09:43Z"
        },
        {
          "tag": "vivarium-engine-v5.4.0",
          "kind": "other",
          "published_at": "2026-07-15T16:49:32Z"
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          "oid": "8f089ebf13e38235a450a2e301dde8a5572aa72d",
          "body": "- Drop scipy from core deps: it was inherited from vivarium-testing-utils where\n  it backed FuzzyChecker's beta fitting (now in vivarium-fuzzy-checker);\n  auto_validation imports no scipy.\n- Move matplotlib/ipython into the validation extra. They are imported\n  unconditionally by the feature (plotti\n[…]\nTML display) but were\n  declared only in docs, so pip install vivarium-auto-validation[validation]\n  could not import the package.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Prune and correct auto-validation dependencies",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
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          "oid": "8a635aa6801456a2542a44566b05e2477c74d513",
          "body": "The list was inherited verbatim from vivarium-testing-utils, whose docs\nauto-documented an API; auto-validation's docs are narrative-only (no autodoc),\nso nitpicky mode emits no unresolved references and every entry was dead.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Trim copy-pasted nitpick-exceptions from auto-validation docs",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
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          "body": "… docs\n\n- Restore pyyaml to core dependencies (interface.py uses yaml.safe_load; it was\n  explicit in testing-utils and the split had been leaning on config-tree's\n  transitive copy).\n- Re-add numpy.seterr(all=\"raise\") in the package __init__, which auto_validation\n  previously inherited via vivariu\n[…]\n proportions\n  docs and fix a stale automated_validation comment; document why the test extra\n  depends on vivarium-testing-utils.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Address review: restore pyyaml + numpy.seterr, tighten smoke test and…",
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          "oid": "b3873530d2d2e3b6143ab397ce64ec7914e6762d",
          "body": "automated_validation moved to vivarium-auto-validation, so drop the validation\nextra, the pandera dep + pandera.mypy plugin, the stale plot_utils mypy exclude\nand the now-unused mypy overrides, trim the dependency set to what the pytest\nplugin needs, and remove the automated_v_and_v docs toctree entry.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Strip automated-V&V from vivarium-testing-utils",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
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          "body": "pyproject (test extra uses vivarium-testing-utils until the plugin is extracted;\nvalidation extra carries the artifactory-only deps), Makefile, Jenkinsfile,\nLICENSE, python_versions, README, CHANGELOG, docs, .readthedocs.yaml, and\npackage smoke tests. The moved automated_v_and_v doc drops the fuzzy-checking\nsection (now in vivarium-fuzzy-checker) + its figure/citation and cross-references\nfuzzy-checker instead.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add vivarium-auto-validation scaffolding and split the V&V docs",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
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          "body": "Rewrite internal vivarium.testing_utils.automated_validation.* imports to\nvivarium.auto_validation.* (fuzzy imports already point at vivarium.fuzzy_checker\nfrom the earlier split); add the package __version__, py.typed, and __init__.py\nmarkers for the data_transformation/visualization subpackages.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Adapt auto-validation imports and package markers",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
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          "body": "…re move)\n\nByte-identical relocation of the automated-V&V subtree (source, tests, docs) out\nof vivarium-testing-utils, renamed automated_validation -> auto_validation. No\ncontent changes - reviewers can skip this commit.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Move automated_validation into a vivarium-auto-validation package (pu…",
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          "author_login": "stevebachmeier",
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          "is_bot": false,
          "headline": "Update CHANGELOG.rst (#220)",
          "author_name": "Hussain Jafari",
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          "headline": "Reorganize fuzzy-checker and rename assert_proportion (#219)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T18:18:39Z",
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          "body": "Category: CI/infrastructure\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-6034\n\nChanges and notes\nJenkins logged a spurious error — ERROR: Specified HTML directory '.../output/htmlcov_tests' does not exist — on every libs/* build. Root cause: the makefile only generates coverage when COV i\n[…]\ncribing the removal.\nCoverage opt-in machinery (pytest-cov, [tool.coverage], --cov plumbing) left intact, so no local coverage workflow is broken and no CI signal changes.\n🤖 Generated with Claude Code",
          "is_bot": false,
          "headline": "Stop test-coverage reporting in CI (#208)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
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          "body_truncated": true,
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          "oid": "4e14275d412dda5af133b3d3ad3801e8b896ea6f",
          "body": "Albrja/mic-7309/Add pr labeler workflow\n\nAdd workflow to automatically label pull requests\n- *Category*: CI\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7309\n\nChanges and notes\n-add pr labeler workflow\n\nTesting\n<img width=\"1742\" height=\"606\" alt=\"image\" src=\"https://github.com/user-attachments/assets/610aa4a9-3f7f-47e9-a8e4-b634b80b223a\" />\n\nNote the Engine and Public-Health labels, and then the Public-Health update was removed, and the labels stay in sync.",
          "is_bot": false,
          "headline": "Albrja/mic-7309/Add pr labeler workflow (#212)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-20T21:40:34Z",
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          "body": null,
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          "headline": "Move docs from testing-utils to fuzzy-checker (#216)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T20:02:19Z",
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          "body": null,
          "is_bot": false,
          "headline": "Add .readthedocs.yaml for vivarium-fuzzy-checker (#215)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:56:11Z",
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          "oid": "fc53c0380d41c97447cfd21d4b3f5ae43e35ac68",
          "body": null,
          "is_bot": false,
          "headline": "Fix fuzzy-checker README underline to unblock the 0.1.0 release (#214)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:37:06Z",
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          "oid": "cdf6973e25aae327aa232f2286c7c664a6b33f8f",
          "body": null,
          "is_bot": false,
          "headline": "Extract FuzzyChecker into vivarium-fuzzy-checker (#211)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:14:41Z",
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          "oid": "3fbd0e6a601b8c5b0111cb75ea3896131a8aef7b",
          "body": null,
          "is_bot": false,
          "headline": "Update CHANGELOG.rst",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": false,
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        },
        {
          "oid": "57d1e0a8655b53d77ac34c9c044f08feb0e4108f",
          "body": "* Vectorize order-0 interpolation merge (MIC-7097)\n\nInterpolation.__call__ scaled linearly with the number of categorical\ngroups: it grouped the population by the key columns and ran one\npd.merge per group via Order0Interp (74 merges per lookup for 37\nsubnationals x 2 sexes; ~30% of runtime over a 4\n[…]\n(1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\nCo-authored-by: Steve Bachmeier <23350991+stevebachmeier@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Vectorize order-0 interpolation merge (#194)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
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          "body_truncated": true,
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        },
        {
          "oid": "c19ec91b87daf6f634567e2914b928254210b2be",
          "body": "* Tighten the lookup-key contract; simplify validation (MIC-7097)\n\n- Raise at construction (validate=True) when the key columns (categorical\n  values plus bin starts) do not uniquely identify a data row, replacing\n  the silent first-row-wins behavior for duplicate rows in purely\n  categorical tables\n[…]\nctly from\n__init__.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Remove jira ticket mention\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Tighten the lookup-key contract; simplify validation (#193)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
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          "is_coding_agent": true
        },
        {
          "oid": "ac7e96617ef3ccba40ad53a46fe410f55bc2b9eb",
          "body": "Introduce ContinuousParameter (name, start_column, end_column) and pass\nit everywhere the interpolation machinery previously re-derived edge\ncolumn names from base-name strings: Order0Interp, validate_parameters,\nvalidate_call_data, and check_data_complete (whose (name, start, end)\ntuple interface p\n[…]\n the\nLookupTableData type it guards; its consumers are the LookupTable input\ncontract (table.py, interface.py), not interpolation.\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Represent continuous lookup parameters as records (MIC-7097) (#192)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "bd6f79576a791925ae3e2be50121db79477848f3",
          "body": "…n (MIC-7097)\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add consolidated 5.5.0 changelog entry for interpolation vectorizatio…",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "d177b0a1f8b97a0aad977f2ebffe63f6bcff6389",
          "body": "* Characterize order-0 lookup behavior (MIC-7097)\n\nTests-only: pin the observable behavior of the interpolation machinery\nahead of the MIC-7097 refactor stack, so later changes are reviewed\nagainst unchanged expectations. Adds multi-categorical selection, a\nshared-bin-edge fan-out guard, unknown-cat\n[…]\nngine unmodified.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Remove reference to 'Golden\"\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Characterize order-0 lookup behavior (#195)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "a55838ddbee6dc7c27cb7b521233e9237309c922",
          "body": "* Add load_tmred/load_categories data-source normalizers (MIC-7071)\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Route risk-effect data through config data_sources (MIC-7071)\n\nAdd tmred, relative_risk_scalar, and demographic_dimensions data sources to CausalFactorEffect (\n[…]\n.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Hussain Jafari <hjafari@uw.edu>\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Make VPH risk components artifact-less (MIC-7071) (#186)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-16T23:56:58Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "0dc425e1d65b4af6ef2a589cc37de2b45add7668",
          "body": "* Remove redundant scenario re-filter in _get_combined_data (MIC-7214)\n\nScenario levels are filtered and dropped at bundle formatting\n(RatioMeasureDataBundle._get_formatted_datasets), so the re-filter in\nplot_utils._get_combined_data always raised KeyError: 'Level scenario not\nfound' for any compari\n[…]\n pushed commit failed with 'reference is not a tree' before\nSphinx ever ran).\n\nCo-Authored-By: Claude Fable 5 <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Fable 5 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Remove redundant scenario re-filter in plotting (#206)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-16T18:13:43Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "475b897914d2c1d997c8c521b3d34b949efc1234",
          "body": null,
          "is_bot": false,
          "headline": "stop xfailing now-passing tests (#209)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-16T17:33:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0dfff8b1275c94ad2be3b356ec18b017036925e9",
          "body": null,
          "is_bot": false,
          "headline": "Sbachmei/public health/mic 7283/fix hardcoded entity type (#205)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-16T17:31:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e5d830ff41d461fde6ade92a152f849592492996",
          "body": "Albrja/mic 6867/change-population-events-order\n\nUpdate order in which population characteristics are updated\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6867",
          "is_bot": false,
          "headline": "Albrja/mic 6867/change-population-events-order (#125)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-15T17:07:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "43350455b3695eb57eea04f0f690b7c83f865d74",
          "body": "Albrja/mic 6867/observer priority\n\nAdd priority for observer and events\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6867\n\nChanges and notes\n-support priority for observers",
          "is_bot": false,
          "headline": "Albrja/mic 6867/observer priority (#124)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-15T16:48:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b510b9e3ded0d8f085a1491caf4e676ae2fa4737",
          "body": "* Update stale references\n\n* Fix stale :mod:`vivarium` cross-refs in cluster-tools docstrings\n\nThe vivarium-engine RTD inventory doesn't include a bare 'vivarium' module\n(that path is now just the namespace-package __init__), so the two\n:mod:`vivarium` cross-refs failed docs-build. Point them at\n:mod:`vivarium.engine` where the target now lives.",
          "is_bot": false,
          "headline": "Update stale references (#204)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-14T23:48:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a5749a7e6b4322bbf7de3ecd633bcb294a1c280e",
          "body": "…ms (MIC-7100) (#202)",
          "is_bot": false,
          "headline": "Remove pre-monorepo LayeredConfigTree + vivarium attribute-import shi…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-14T22:57:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "246e0264de05fc2813cc4f3433b119cf8f5891df",
          "body": "Use fuzzy checker for stochastic proportion assertions\n\nUse FuzzyChecker in test suite for stochastic proportion assertions\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7274\n\nChanges and notes\n-use FuzzyChecker for stochastic proportion assertions\n-tighten deterministic assertions that cannot use FuzzyChecker",
          "is_bot": false,
          "headline": "Use fuzzy checker for stochastic proportion assertions (#197)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T22:11:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b8728e0501e617bb7bc841289cf9474e04943222",
          "body": "The release workflow's detect job installs vivarium-build-utils with\n`uv pip install --system` to compute the dependency-ordered release\nmatrix, but had no Set up Python / Set up uv steps. uv therefore\ntargeted the runner's system interpreter at /usr, which is\nexternally-managed (PEP 668), and refus\n[…]\ne install targets\na managed toolcache interpreter. Latent until now because release.yml\nonly runs on release pushes, not on PR CI.\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Set up managed Python in release detect job (#203)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T21:48:48Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "7b381d43d6a34ba1e5510ae60f354e9c0c5d947b",
          "body": "Skip validation of lookup data. Only do once\n\nSkip validation of lookup table data to speed up test suite\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7257\n\nChanges and notes\n-Skip per build validation of lookup data. \n-Add new test to validate mocked data once per session",
          "is_bot": false,
          "headline": "Skip validation of lookup data. Only do once (#196)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T21:42:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10f159be953d6a9736a917358fa335950dbf0439",
          "body": "* Add packaging and tomli runtime deps to vivarium-build-utils\n\nThe new vivarium.build_utils.dependencies module needs packaging\n(Requirement/SpecifierSet) and, on the 3.10 floor, the tomli tomllib backport.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Add vivarium.build_\n[…]\n order function; leverage graphlib\n\n* rename helper\n\n* change function name\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\nCo-authored-by: Patrick Nast <pnast@uw.edu>",
          "is_bot": false,
          "headline": "Support atomic cross-package PRs against in-tree sibling versions (#152)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T21:23:18Z",
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        {
          "oid": "245fe4ff78887fda62be702c5357325f3f42dc29",
          "body": "Albrja/feature/mic 7107/jobmon all artifacts\n\nUse Jobmon instead of drmaa to parallelize \"all\" location artifact building\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7107\n\nChanges and notes\n-use Jobmon to parallelize \"all\" artifact building by fanning out a workflow for each location\n\nTesting\n-successfully ran ``make_artifacts -vvv -l \"all\" -o ~/scartch ``",
          "is_bot": false,
          "headline": "Albrja/feature/mic 7107/jobmon all artifacts (#191)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T20:53:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2b9c36fe11867f39f305f12105f9d8cec502f6cd",
          "body": null,
          "is_bot": false,
          "headline": "push back the test_get_skip_post_processor_deprecation date (#199)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T17:18:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4d22214db8b3e61e38a01bdf2c013b2a185e90d5",
          "body": "Update mortality tests to use shared step fixture\n\nUpdate mortality tests to use shared step fixture\n- *Category*: Refactor/test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-Update mortality tests to use shared step fixture",
          "is_bot": false,
          "headline": "Albrja/public-health/mic-7256/part-3 (#188)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-09T00:28:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c61dc0a3eac325d1286df55a80640b8b24390948",
          "body": "Albrja/public health/mic 7256/pt 2\n\nMore fixture taxonomy updates\n- *Category*: Refactor/test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-more updates to use shared fixture InteractiveContext",
          "is_bot": false,
          "headline": "Albrja/public health/mic 7256/pt 2 (#187)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-08T23:58:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1e1b703c706b454070e968aa0dc45f9890dab186",
          "body": "* Add shared README python-version sync tool (MIC-5670)\n\nDRY up the easylink-style README updater into vivarium-build-utils so each\nlib no longer copies its own update_readme.py.\n\n- Add vivarium.build_utils.readme module (stdlib-only): enumerated list,\n  \"requires Python X.Y+\" floor, and python=X.Y \n[…]\nminimal: README.rst only.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Update CHANGELOG.rst\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add shared README python-version sync tool (MIC-5670) (#185)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-08T23:05:26Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "319eaf8abb006eb780d2cc51c6b9e5d2781dcced",
          "body": "Albrja/public-health/fixture-taxonomy-pt1\n\nAdd shared InteractiveContext fixtures\n- *Category*: Test/Refactor\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-adds new InteractiveContext fixtures to share components to decrease runtime\n-update scope of fixtures to be more efficient",
          "is_bot": false,
          "headline": "Albrja/public-health/fixture-taxonomy-pt1 (#184)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-08T18:54:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "891cfb7105a41f46cba7eb79ddae1ff3f3c0db4c",
          "body": "Category: bugfix\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-7277\n\nChanges and notes\nMirrored distributions returned NaN for valid inputs because the computability window was in reflected space; this maps it back into data space via mirror_point - bound.\n\nTesting\nAdded test_mirrored_cdf_within_support_is_not_nan (parametrized over MirroredGumbel/MirroredGamma) is not NaN and equals 1 - underlying.cdf(mirror_point - x).\nExisting risk-distributions unit tests pass",
          "is_bot": false,
          "headline": "mirrored computability bounds bugfix (#176)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-08T18:35:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c859b932fd22fa8c8966c223ca6315a35fa659b7",
          "body": "Albrja/cluster-tools/bugfix/mic-7278/prevent-order-test-failures\n\nUpdate pandas and loguru fixtures to not leak state to later tests\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278\n\nChanges and notes\n-update pandas display settings to not leak to later tests\n-restore default loguru sink",
          "is_bot": false,
          "headline": "Albrja/cluster-tools/bugfix/mic-7278/prevent-order-test-failures (#177)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-07T16:44:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c6d8c5291e116df0d958d5cfb5c0c3c8303a1fe2",
          "body": "* ai-tools: add model-development workflow (MIC-6986)\n\nAdd /viv:model-development, the model-repo sibling of\n/viv:framework-development: a staged artifact->component->observer build\ndriven from an iteration plan, with blind parallel InteractiveContext\nverification, simulation-based checks, _review-c\n[…]\nranged up front rather than discovered mid-build.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add model-development workflow (MIC-6986) (#137)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-06T19:43:20Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "66246238e340b98f8d4c8f07c673d7a29e0ff7bf",
          "body": "## Pin Vivarium Inputs to be compatible with monorepo\n\nChanges and notes\nPin Vivarium Inputs to be compatible with monorepo",
          "is_bot": false,
          "headline": "Pin Vivarium Inputs to be compatible with monorepo (#183)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-06T19:36:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "32e04d64fdf98603f6b217902486d28c9996185a",
          "body": "* Add PyPI classifiers to lib pyproject.toml files\n\nWhen migrating from per-repo setup.py to the monorepo pyproject.toml, the\ntrove classifiers were not carried over. Restore them per lib, adapted\nfrom each library's pre-migration setup.py, with the license classifier\ncorrected to BSD-3-Clause (seve\n[…]\n 4.2.8 -> 4.2.9\n- profiling:      0.4.18 -> 0.5.1\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add PyPI classifiers to lib pyproject.toml files (#154)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-06T19:10:29Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "6265d9b8f77f0367d2ee0372b613dd8320052a55",
          "body": "…r with xdist\n\nAlbrja/testing-tuils/bugfix/prevent-malformed-data-with-ordering\n\nMore updates to prevent future CI failures from test ordering with xdist\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278",
          "is_bot": false,
          "headline": "Albrja/testing-tuils/bugfix/prevent-malformed-data-with-ordering (#175)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-02T22:38:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5994fa093023cb87dd7e5413443140cd0472076e",
          "body": "…0) (#182)",
          "is_bot": false,
          "headline": "Delete libs/compat from monorepo, drop profiling runtime dep (MIC-710…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-02T22:14:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "718dc75232003347a5817bd117133830bcc06003",
          "body": "…C-7100) (#181)",
          "is_bot": false,
          "headline": "Deprecate vivarium-compat: gut import hook, add retirement banner (MI…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-02T22:09:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0682a1d3151bae5ac5ae5410efdd19ae76abd976",
          "body": "Albrja/bugfix/test-ordering-malformation\n\nClear context to prevent test failure on ordering\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278\n\nChanges and notes\n-clear simulation context",
          "is_bot": false,
          "headline": "Albrja/bugfix/test-ordering-malformation (#174)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-02T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "53217794be0a3d2e3db9d2eafa9e930d0bf640a6",
          "body": null,
          "is_bot": false,
          "headline": "Sbachmei/build utils/mic 7086/leverage make targets (#173)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-01T21:51:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8a269051080fa677e1b6008ed2232c5758f4866f",
          "body": "Albrja/build-utils/mic-7854/Only use pip cache on push/PR\n\nOnly use pip cache on push/pr \n- *Category*: Build\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6854\n\nChanges and notes\n-update builds to only use pip cache on push/pr",
          "is_bot": false,
          "headline": "Albrja/build-utils/mic-6854/Only use pip cache on push/PR (#172)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-01T20:22:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b06329118069cebb273dcd0594a7ee63b9418d1",
          "body": "Albrja/public-health/mic-7255/Reduce pop size in tests\n\nReduce population size in test suites to improve runtime\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7255\n\nChanges and notes\n-Reduce population size in test suites to improve runtime",
          "is_bot": false,
          "headline": "Albrja/public-health/mic-7255/Reduce pop size in tests (#170)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-01T17:11:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "af2c4b7721686229c47418669fb34d1a4bb2cb5e",
          "body": "Fix order dependent test fixtures\n\nFix order dependent test fixtures causes results to not be reproduced\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-XYZ\n\nChanges and notes\n-Fix order dependent test fixtures",
          "is_bot": false,
          "headline": "Fix order dependent test fixtures (#165)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-30T22:58:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "06720bb7f8f531e80f8e3210ad2f9020d1e7654c",
          "body": null,
          "is_bot": false,
          "headline": "Isolate cluster-tools mkdir test with tmp_path (#171)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T22:19:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b8fedcdf45dd9daa3588dfdfa0fcfd75ae353191",
          "body": "Category: feature\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-7116\n\nChanges and notes\nFeature: LookupTable accepts DataFrame/Series with lookup attributes on the row index.\nAPI: LookupTable.value_columns is now a pandas.Index (was list[str]).\nAPI: Interpolation.__init__ infers parameter \n[…]\nDeprecation: passing a flat DataFrame to build_table/set_data is deprecated.\nDeprecation: passing a Mapping to build_table/set_data is deprecated.\n\nTesting\nAdded/updated unit tests for indexed inputs.",
          "is_bot": false,
          "headline": "lookup table multiindex (#110)",
          "author_name": "Rajan Mudambi",
          "author_login": "rmudambi",
          "committed_at": "2026-06-30T21:34:01Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "d883f45f3262da4c3379db416c008882c5eb768d",
          "body": null,
          "is_bot": false,
          "headline": "Add support for no artifactory access in 'make build-env' (#162)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:37:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "40fc585814432a46dae506c97a14ce90d7bc0fb5",
          "body": null,
          "is_bot": false,
          "headline": "Remove pytest-xdist as pytest dependency (#169)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:14:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c34198c5a3db3bf95f51c5ab0c6a16d158a8f888",
          "body": null,
          "is_bot": false,
          "headline": "Include pytest-xdist in pytest group (#168)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:08:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e774edc2fa26475c330773ffa9b4bb9c59050562",
          "body": "* ai-tools: fix doc drift found by /viv:repo-maintenance (MIC-7128)\n\nAudit of the ai-tools plugin docs and the root CLAUDE.md against their\nupstreams surfaced five stale references; correct them:\n\n- continuous-integration: GH runners install vivarium-build-utils from\n  PyPI, not git (build-utils its\n[…]\nRead the Docs API version\n\nBump ai-tools to 0.22.1.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\n\n* Update CHANGELOG.rst\n\n---------\n\nCo-authored-by: Claude Opus 4.8 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Fix doc drift found by /viv:repo-maintenance (MIC-7128) (#164)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-06-30T18:14:53Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "91cbd98744b1d7d2e3a050a22f2111402369d0c7",
          "body": "* Add confidence scoring and Sonnet review agents\n\nAdapt Anthropic's official code-review plugin into viv:code-reviewer:\n\n- Run the five _review_* lenses on Sonnet (model: sonnet).\n- Add a Haiku _review_scorer sub-agent that independently scores each\n  finding 0-100 against a verbatim rubric, judgin\n[…]\n\n\nMIC-7262\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Update CHANGELOG for version 0.22.1\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add confidence scoring and Sonnet review agents (#156)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-06-30T17:05:40Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "64eb00952ec31e617e76eb1231f5feb2067e56af",
          "body": "Albrja/build utils/mic 7254/turn cov off\n\nTurn on n auto and turn off coverage for test step of CI\n- *Category*: CI\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7254\n\nChanges and notes\n-turns --cov off to save runtime\n-enables n auto from pytest plugin",
          "is_bot": false,
          "headline": "Albrja/build utils/mic 7254/turn cov off, enable n auto (#158)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T23:25:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "454001730a8bc23736df4b397abff66b591a8050",
          "body": "Albrja/testing-utils/mic-7253Update xdist plugin behavior\n\nUpdate xdist plugin default behavior\n- *Category*: <!-- one of bugfix, feature, refactor, POC, CI/infrastructure, documentation, \n                   revert, test, release, other/misc -->\n- *JIRA issue*: https://jira.ihme.washington.edu/brows\n[…]\ndds a `pytest_report_header` line reporting the resolved worker\n  count and the CPU/memory it was derived from, so the decision is auditable in CI\n  logs (xdist still prints the actual spawned count).",
          "is_bot": false,
          "headline": "Albrja/testing-utils/mic-7253Update xdist plugin behavior (#155)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T23:14:34Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "90d53f7293c728d7480e9b97bc67eaeb9e0d4e3c",
          "body": null,
          "is_bot": false,
          "headline": "Changelog",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7807dca567f710af9a0e7044335b6fff094bf8e4",
          "body": "albrja/public-health/mic-7234/microdata-closed-cohort\n\nAdd implementation for single sample closed cohort feature of Microdata Observer\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7234\n\nChanges and notes\n-add single random sample for closed cohort",
          "is_bot": false,
          "headline": "albrja/public-health/mic-7234/microdata-closed-cohort (#148)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1196403fb85197a78f27137a36f39892feb4050c",
          "body": "Albrja/feature/mic 7064/microdata obs configuration\n\nConfiguration capabilities for Microdata Observer\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7064\n\nChanges and notes\n-add configuration for row filters\n-add configuration for row limit\n-add configuration for time step filtering",
          "is_bot": false,
          "headline": "Albrja/feature/mic 7064/microdata obs configuration (#140)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e4d94543e29cf7e04906a99e2bd4d1a1da697499",
          "body": null,
          "is_bot": false,
          "headline": "Add tutorial",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e1162375d557e507df022c4abb08c9ed36b7431e",
          "body": null,
          "is_bot": false,
          "headline": "Address pr comments",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d8aac8896c5a0b8cf18a3307e3aa3c336f73bb3f",
          "body": null,
          "is_bot": false,
          "headline": "Revert change",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ebfd9721d8d3fe2a859bc2e4bb77fcaf471a7688",
          "body": null,
          "is_bot": false,
          "headline": "Remove MicrodataCode from Engine",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a45630742a899ee8526d6db03510f486cd427dcc",
          "body": null,
          "is_bot": false,
          "headline": "Move Microdata Observer to public-health lib",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-29T22:44:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "25ebf13f8eeb3a67f7083bb5e7b730b63aeb07af",
          "body": null,
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                "key": "openssf_scorecard_signed_releases",
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                "key": "forks",
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            "note": null,
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                "key": "issue_template",
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      {
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                "key": "contributor_breadth",
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                "key": "openssf_scorecard_contributors",
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          {
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                "key": "issue_resolution",
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                "max_points": 46.75
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                "key": "pr_acceptance",
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                "max_points": 38.25
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              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
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                "max_points": 15
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            ]
          },
          {
            "key": "stewardship",
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            "note": null,
            "notes": [],
            "value": 71,
            "inputs": {
              "followers": 170,
              "owner_type": "Organization",
              "is_verified": null,
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              "account_age_days": 4789
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            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
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                "details": [
                  {
                    "code": "owner_organization",
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                "max_points": 30
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              {
                "key": "verified_domain",
                "name": "Verified domain",
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                "points": 0,
                "status": "missed",
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                "max_points": 20
              },
              {
                "key": "owner_reach",
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                "detail": "170 followers of ihmeuw",
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                    "code": "owner_followers",
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                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "203 public repos, account ~13 yr old",
                "points": 25,
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                "details": [
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                    "code": "public_repos",
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                      "count": 203
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                    "code": "account_age_years",
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                "max_points": 25
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          },
          {
            "key": "package_maintenance",
            "band": "excellent",
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            "note": null,
            "notes": [],
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            "inputs": {
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            "components": [
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                "key": "published_resolvable",
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                "detail": "8 package(s) on pypi",
                "points": 25,
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                "details": [
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                "key": "publish_recency",
                "name": "Publish recency",
                "detail": "latest publish 0 days ago",
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                "details": [
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                    "code": "publish_recency",
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                "key": "version_history",
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                "key": "not_deprecated",
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                "detail": "active, not deprecated or yanked",
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        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
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        "key": "engineering",
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        "weight": 0.2,
        "metrics": [
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            "components": [
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                "key": "ci_workflows",
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                    "code": "ci_workflows",
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                "key": "tests_present",
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                "key": "linter_config",
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                "key": "editorconfig",
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              {
                "key": "openssf_scorecard_ci_tests",
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            "key": "documentation",
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            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
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      {
        "key": "security",
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        "metrics": [
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            "key": "security_posture",
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                "code": "excluded_no_data",
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              {
                "code": "weights_renormalized",
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            "value": 48,
            "inputs": {
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            "components": [
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                "key": "binary_artifacts",
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              {
                "key": "branch_protection",
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                "key": "ci_tests",
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              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
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              {
                "key": "code_review",
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              {
                "key": "contributors",
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              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
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                "points": 10,
                "status": "met",
                "details": [],
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              },
              {
                "key": "dependency_update_tool",
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                "points": 0,
                "status": "missed",
                "details": [],
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              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
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                "status": "missed",
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                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
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                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "project was created within the last 90 days. Please review its contents carefully",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
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                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
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                "status": "missed",
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              {
                "key": "sast",
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                "status": "missed",
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              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
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                "key": "signed_releases",
                "name": "Signed-Releases",
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                "points": 0,
                "status": "excluded",
                "details": [
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                    "code": "no_data",
                    "params": {}
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                ],
                "max_points": 7.5
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                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
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              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
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                "status": "met",
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            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
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            "notes": [
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                "code": "jurisdiction_evidence_limits",
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            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
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              "policy_countries": [
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              "review_only_matches": 0,
              "assessed_self_published_locations": 5
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            "components": [
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                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
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                "max_points": 100
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            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "moderate",
        "name": "AI Readiness",
        "value": 68,
        "weight": 0,
        "metrics": [
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            "key": "ai_agent_context",
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            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
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            "inputs": {
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        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
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    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
    "deps.dev does not index pypi:vivarium-engine@5.5.3; advisories assessed against the repository dependency graph instead"
  ],
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  "generated_at": "2026-07-23T23:09:00.158533Z",
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  "full_name": "ihmeuw/vivarium-suite",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — PyPI.