ihmeuw / vivarium-suite

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        },
        {
          "oid": "b7417f1267e97a90194fe4ebf3c25945fdd19978",
          "body": "Point the labeler glob/label and the root README package table at the new\npackage, and refresh the build-utils comments that cited config-tree's now-gone\ntesting-utils test cycle (still accurate with pytest-vivarium, which likewise\ndepends on build-utils and so cannot be a dependency of it).\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Update references from testing-utils to pytest-vivarium",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-23T22:21:39Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "a85ab26906a5e5529033a63914b5dc973b8414b5",
          "body": "release.yml hardcoded the tag as vivarium-<dir>, which cannot express a\nnon-vivarium- distribution like pytest-vivarium. Derive the tag prefix from each\npackage's pyproject [project].name instead: for the push and workflow_dispatch\npaths via a get_dist pyproject reader, for the release-published pat\n[…]\nld emitted by build-release-matrix. Backward-compatible:\nevery existing lib's dist IS vivarium-<dir>, so their tags are unchanged.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Derive the release git tag from the dist name, not vivarium-<dir>",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-23T22:21:39Z",
          "body_truncated": true,
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        },
        {
          "oid": "0831cb8fc098ce601544acb989c206e2905b67b9",
          "body": "Every remaining consumer depended on vivarium-testing-utils only for the\nauto-loaded pytest plugin, so swap that test dependency for pytest-vivarium\nacross artifact, cluster-tools, config-tree, engine, fuzzy-checker, gbd-mapping,\nprofiling, public-health, risk-distributions, and validation. Stale version\npins (>=0.3.4, >=0.6.0) are dropped since pytest-vivarium starts at 0.1.0.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Repoint vivarium-testing-utils dependents to pytest-vivarium",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-23T22:21:39Z",
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          "is_coding_agent": true
        },
        {
          "oid": "e0f9fdad2492f193fa2da32ab2e9f9b7425378d4",
          "body": "Rewrite the moved plugin/test imports and docstring for the new package, add the\npackage __init__ (with numpy.seterr), pyproject (pytest11 entry point, deps,\npackaging), README, docs, and smoke tests, and delete the now-empty\nlibs/testing-utils (frozen on PyPI at 0.7.6).\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Adapt moved files, add pytest-vivarium scaffolding, delete testing-utils",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-23T22:21:39Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "7aff9d08498116905cf9a1ad50c80c92e80e68b7",
          "body": "Byte-identical git mv of the extracted files from libs/testing-utils to the new\nlibs/pytest-vivarium package, so history is preserved and reviewers can skip this\ncommit. All adaptation (imports, docstrings, new package config, deletion of the\nrest of testing-utils) is in the following commits.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Move pytest plugin + shared scaffolding into pytest-vivarium (pure move)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-23T22:21:39Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "59ea2977a41a4564968a609c31d953d6212e0330",
          "body": null,
          "is_bot": false,
          "headline": "Reorganize tests into subdirs (#222)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-22T18:01:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "238032150d077d03f83c0de9d1453829da603542",
          "body": "Add job id to name of performance logs\n\nAdd job id to name of performance logs\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6941\n\nChanges and notes\n-add job id to name of performance logs",
          "is_bot": false,
          "headline": "Add job id to name of performance logs (#217)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-22T17:58:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fa2204229f537028bfcc9960356902a6a11c07e9",
          "body": "Rename the distribution (vivarium-validation), import path\n(vivarium.validation), and lib directory (libs/validation) per the decision to\ndrop the 'auto' qualifier. git mv preserves file history; also repoints the\nsetuptools_scm tag_regex, the .readthedocs.yaml paths, and the .github/labeler.yml\nglob/label to the new name.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Rename package vivarium-auto-validation -> vivarium-validation",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "5a9a56df67338c57927d4749a9ecec55d8229f56",
          "body": null,
          "is_bot": false,
          "headline": "delete testing-utils jenkinsfile to stop running CI",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0cbc43e60a0f6ac58b5160136c649d835dd37a57",
          "body": null,
          "is_bot": false,
          "headline": "minor changelog tweak",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8f089ebf13e38235a450a2e301dde8a5572aa72d",
          "body": "- Drop scipy from core deps: it was inherited from vivarium-testing-utils where\n  it backed FuzzyChecker's beta fitting (now in vivarium-fuzzy-checker);\n  auto_validation imports no scipy.\n- Move matplotlib/ipython into the validation extra. They are imported\n  unconditionally by the feature (plotti\n[…]\nTML display) but were\n  declared only in docs, so pip install vivarium-auto-validation[validation]\n  could not import the package.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Prune and correct auto-validation dependencies",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "8a635aa6801456a2542a44566b05e2477c74d513",
          "body": "The list was inherited verbatim from vivarium-testing-utils, whose docs\nauto-documented an API; auto-validation's docs are narrative-only (no autodoc),\nso nitpicky mode emits no unresolved references and every entry was dead.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Trim copy-pasted nitpick-exceptions from auto-validation docs",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "e4c3080195e3f278d9e79a7bbddca2adcd7e176b",
          "body": "… docs\n\n- Restore pyyaml to core dependencies (interface.py uses yaml.safe_load; it was\n  explicit in testing-utils and the split had been leaning on config-tree's\n  transitive copy).\n- Re-add numpy.seterr(all=\"raise\") in the package __init__, which auto_validation\n  previously inherited via vivariu\n[…]\n proportions\n  docs and fix a stale automated_validation comment; document why the test extra\n  depends on vivarium-testing-utils.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Address review: restore pyyaml + numpy.seterr, tighten smoke test and…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "b3873530d2d2e3b6143ab397ce64ec7914e6762d",
          "body": "automated_validation moved to vivarium-auto-validation, so drop the validation\nextra, the pandera dep + pandera.mypy plugin, the stale plot_utils mypy exclude\nand the now-unused mypy overrides, trim the dependency set to what the pytest\nplugin needs, and remove the automated_v_and_v docs toctree entry.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Strip automated-V&V from vivarium-testing-utils",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "1af402067345ec6a78547a0d6d3abe95492ab09e",
          "body": "pyproject (test extra uses vivarium-testing-utils until the plugin is extracted;\nvalidation extra carries the artifactory-only deps), Makefile, Jenkinsfile,\nLICENSE, python_versions, README, CHANGELOG, docs, .readthedocs.yaml, and\npackage smoke tests. The moved automated_v_and_v doc drops the fuzzy-checking\nsection (now in vivarium-fuzzy-checker) + its figure/citation and cross-references\nfuzzy-checker instead.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add vivarium-auto-validation scaffolding and split the V&V docs",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "3b68bb35900010346b02392f3091608f0858e328",
          "body": "Rewrite internal vivarium.testing_utils.automated_validation.* imports to\nvivarium.auto_validation.* (fuzzy imports already point at vivarium.fuzzy_checker\nfrom the earlier split); add the package __version__, py.typed, and __init__.py\nmarkers for the data_transformation/visualization subpackages.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Adapt auto-validation imports and package markers",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "db4e895175b22f4828ca4733e9dd78c435129c89",
          "body": "…re move)\n\nByte-identical relocation of the automated-V&V subtree (source, tests, docs) out\nof vivarium-testing-utils, renamed automated_validation -> auto_validation. No\ncontent changes - reviewers can skip this commit.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Move automated_validation into a vivarium-auto-validation package (pu…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "c2096024478d04229d091bf5a266104be680e0cb",
          "body": null,
          "is_bot": false,
          "headline": "Update CHANGELOG.rst (#220)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-21T18:59:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bb53920c21d36b0669e89f1185607dadba6c91e3",
          "body": null,
          "is_bot": false,
          "headline": "Reorganize fuzzy-checker and rename assert_proportion (#219)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-21T18:18:39Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "58e626ffc410afd7ad7bc18cc8975d5496d9c65b",
          "body": "Category: CI/infrastructure\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-6034\n\nChanges and notes\nJenkins logged a spurious error — ERROR: Specified HTML directory '.../output/htmlcov_tests' does not exist — on every libs/* build. Root cause: the makefile only generates coverage when COV i\n[…]\ncribing the removal.\nCoverage opt-in machinery (pytest-cov, [tool.coverage], --cov plumbing) left intact, so no local coverage workflow is broken and no CI signal changes.\n🤖 Generated with Claude Code",
          "is_bot": false,
          "headline": "Stop test-coverage reporting in CI (#208)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-21T17:35:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "4e14275d412dda5af133b3d3ad3801e8b896ea6f",
          "body": "Albrja/mic-7309/Add pr labeler workflow\n\nAdd workflow to automatically label pull requests\n- *Category*: CI\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7309\n\nChanges and notes\n-add pr labeler workflow\n\nTesting\n<img width=\"1742\" height=\"606\" alt=\"image\" src=\"https://github.com/user-attachments/assets/610aa4a9-3f7f-47e9-a8e4-b634b80b223a\" />\n\nNote the Engine and Public-Health labels, and then the Public-Health update was removed, and the labels stay in sync.",
          "is_bot": false,
          "headline": "Albrja/mic-7309/Add pr labeler workflow (#212)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-20T21:40:34Z",
          "body_truncated": false,
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        },
        {
          "oid": "87a101d97f28c84df6f6544db79073ea7f229ff3",
          "body": null,
          "is_bot": false,
          "headline": "Move docs from testing-utils to fuzzy-checker (#216)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T20:02:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0ceafea4457696bf118caec591d02365453e7ae1",
          "body": null,
          "is_bot": false,
          "headline": "Add .readthedocs.yaml for vivarium-fuzzy-checker (#215)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:56:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fc53c0380d41c97447cfd21d4b3f5ae43e35ac68",
          "body": null,
          "is_bot": false,
          "headline": "Fix fuzzy-checker README underline to unblock the 0.1.0 release (#214)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:37:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cdf6973e25aae327aa232f2286c7c664a6b33f8f",
          "body": null,
          "is_bot": false,
          "headline": "Extract FuzzyChecker into vivarium-fuzzy-checker (#211)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-20T17:14:41Z",
          "body_truncated": false,
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        {
          "oid": "3fbd0e6a601b8c5b0111cb75ea3896131a8aef7b",
          "body": null,
          "is_bot": false,
          "headline": "Update CHANGELOG.rst",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "57d1e0a8655b53d77ac34c9c044f08feb0e4108f",
          "body": "* Vectorize order-0 interpolation merge (MIC-7097)\n\nInterpolation.__call__ scaled linearly with the number of categorical\ngroups: it grouped the population by the key columns and ran one\npd.merge per group via Order0Interp (74 merges per lookup for 37\nsubnationals x 2 sexes; ~30% of runtime over a 4\n[…]\n(1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\nCo-authored-by: Steve Bachmeier <23350991+stevebachmeier@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Vectorize order-0 interpolation merge (#194)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "c19ec91b87daf6f634567e2914b928254210b2be",
          "body": "* Tighten the lookup-key contract; simplify validation (MIC-7097)\n\n- Raise at construction (validate=True) when the key columns (categorical\n  values plus bin starts) do not uniquely identify a data row, replacing\n  the silent first-row-wins behavior for duplicate rows in purely\n  categorical tables\n[…]\nctly from\n__init__.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Remove jira ticket mention\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Tighten the lookup-key contract; simplify validation (#193)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "ac7e96617ef3ccba40ad53a46fe410f55bc2b9eb",
          "body": "Introduce ContinuousParameter (name, start_column, end_column) and pass\nit everywhere the interpolation machinery previously re-derived edge\ncolumn names from base-name strings: Order0Interp, validate_parameters,\nvalidate_call_data, and check_data_complete (whose (name, start, end)\ntuple interface p\n[…]\n the\nLookupTableData type it guards; its consumers are the LookupTable input\ncontract (table.py, interface.py), not interpolation.\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Represent continuous lookup parameters as records (MIC-7097) (#192)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "bd6f79576a791925ae3e2be50121db79477848f3",
          "body": "…n (MIC-7097)\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add consolidated 5.5.0 changelog entry for interpolation vectorizatio…",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "d177b0a1f8b97a0aad977f2ebffe63f6bcff6389",
          "body": "* Characterize order-0 lookup behavior (MIC-7097)\n\nTests-only: pin the observable behavior of the interpolation machinery\nahead of the MIC-7097 refactor stack, so later changes are reviewed\nagainst unchanged expectations. Adds multi-categorical selection, a\nshared-bin-edge fan-out guard, unknown-cat\n[…]\nngine unmodified.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Remove reference to 'Golden\"\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Characterize order-0 lookup behavior (#195)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-17T16:42:27Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "a55838ddbee6dc7c27cb7b521233e9237309c922",
          "body": "* Add load_tmred/load_categories data-source normalizers (MIC-7071)\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Route risk-effect data through config data_sources (MIC-7071)\n\nAdd tmred, relative_risk_scalar, and demographic_dimensions data sources to CausalFactorEffect (\n[…]\n.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Hussain Jafari <hjafari@uw.edu>\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Make VPH risk components artifact-less (MIC-7071) (#186)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-16T23:56:58Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "0dc425e1d65b4af6ef2a589cc37de2b45add7668",
          "body": "* Remove redundant scenario re-filter in _get_combined_data (MIC-7214)\n\nScenario levels are filtered and dropped at bundle formatting\n(RatioMeasureDataBundle._get_formatted_datasets), so the re-filter in\nplot_utils._get_combined_data always raised KeyError: 'Level scenario not\nfound' for any compari\n[…]\n pushed commit failed with 'reference is not a tree' before\nSphinx ever ran).\n\nCo-Authored-By: Claude Fable 5 <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Fable 5 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Remove redundant scenario re-filter in plotting (#206)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-16T18:13:43Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "475b897914d2c1d997c8c521b3d34b949efc1234",
          "body": null,
          "is_bot": false,
          "headline": "stop xfailing now-passing tests (#209)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-16T17:33:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0dfff8b1275c94ad2be3b356ec18b017036925e9",
          "body": null,
          "is_bot": false,
          "headline": "Sbachmei/public health/mic 7283/fix hardcoded entity type (#205)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-16T17:31:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e5d830ff41d461fde6ade92a152f849592492996",
          "body": "Albrja/mic 6867/change-population-events-order\n\nUpdate order in which population characteristics are updated\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6867",
          "is_bot": false,
          "headline": "Albrja/mic 6867/change-population-events-order (#125)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-15T17:07:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "43350455b3695eb57eea04f0f690b7c83f865d74",
          "body": "Albrja/mic 6867/observer priority\n\nAdd priority for observer and events\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6867\n\nChanges and notes\n-support priority for observers",
          "is_bot": false,
          "headline": "Albrja/mic 6867/observer priority (#124)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-15T16:48:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b510b9e3ded0d8f085a1491caf4e676ae2fa4737",
          "body": "* Update stale references\n\n* Fix stale :mod:`vivarium` cross-refs in cluster-tools docstrings\n\nThe vivarium-engine RTD inventory doesn't include a bare 'vivarium' module\n(that path is now just the namespace-package __init__), so the two\n:mod:`vivarium` cross-refs failed docs-build. Point them at\n:mod:`vivarium.engine` where the target now lives.",
          "is_bot": false,
          "headline": "Update stale references (#204)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-14T23:48:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a5749a7e6b4322bbf7de3ecd633bcb294a1c280e",
          "body": "…ms (MIC-7100) (#202)",
          "is_bot": false,
          "headline": "Remove pre-monorepo LayeredConfigTree + vivarium attribute-import shi…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-14T22:57:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "246e0264de05fc2813cc4f3433b119cf8f5891df",
          "body": "Use fuzzy checker for stochastic proportion assertions\n\nUse FuzzyChecker in test suite for stochastic proportion assertions\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7274\n\nChanges and notes\n-use FuzzyChecker for stochastic proportion assertions\n-tighten deterministic assertions that cannot use FuzzyChecker",
          "is_bot": false,
          "headline": "Use fuzzy checker for stochastic proportion assertions (#197)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T22:11:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b8728e0501e617bb7bc841289cf9474e04943222",
          "body": "The release workflow's detect job installs vivarium-build-utils with\n`uv pip install --system` to compute the dependency-ordered release\nmatrix, but had no Set up Python / Set up uv steps. uv therefore\ntargeted the runner's system interpreter at /usr, which is\nexternally-managed (PEP 668), and refus\n[…]\ne install targets\na managed toolcache interpreter. Latent until now because release.yml\nonly runs on release pushes, not on PR CI.\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Set up managed Python in release detect job (#203)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T21:48:48Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "7b381d43d6a34ba1e5510ae60f354e9c0c5d947b",
          "body": "Skip validation of lookup data. Only do once\n\nSkip validation of lookup table data to speed up test suite\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7257\n\nChanges and notes\n-Skip per build validation of lookup data. \n-Add new test to validate mocked data once per session",
          "is_bot": false,
          "headline": "Skip validation of lookup data. Only do once (#196)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T21:42:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "10f159be953d6a9736a917358fa335950dbf0439",
          "body": "* Add packaging and tomli runtime deps to vivarium-build-utils\n\nThe new vivarium.build_utils.dependencies module needs packaging\n(Requirement/SpecifierSet) and, on the 3.10 floor, the tomli tomllib backport.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Add vivarium.build_\n[…]\n order function; leverage graphlib\n\n* rename helper\n\n* change function name\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\nCo-authored-by: Patrick Nast <pnast@uw.edu>",
          "is_bot": false,
          "headline": "Support atomic cross-package PRs against in-tree sibling versions (#152)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T21:23:18Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "245fe4ff78887fda62be702c5357325f3f42dc29",
          "body": "Albrja/feature/mic 7107/jobmon all artifacts\n\nUse Jobmon instead of drmaa to parallelize \"all\" location artifact building\n- *Category*: Feature\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7107\n\nChanges and notes\n-use Jobmon to parallelize \"all\" artifact building by fanning out a workflow for each location\n\nTesting\n-successfully ran ``make_artifacts -vvv -l \"all\" -o ~/scartch ``",
          "is_bot": false,
          "headline": "Albrja/feature/mic 7107/jobmon all artifacts (#191)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-13T20:53:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2b9c36fe11867f39f305f12105f9d8cec502f6cd",
          "body": null,
          "is_bot": false,
          "headline": "push back the test_get_skip_post_processor_deprecation date (#199)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-13T17:18:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4d22214db8b3e61e38a01bdf2c013b2a185e90d5",
          "body": "Update mortality tests to use shared step fixture\n\nUpdate mortality tests to use shared step fixture\n- *Category*: Refactor/test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-Update mortality tests to use shared step fixture",
          "is_bot": false,
          "headline": "Albrja/public-health/mic-7256/part-3 (#188)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-09T00:28:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c61dc0a3eac325d1286df55a80640b8b24390948",
          "body": "Albrja/public health/mic 7256/pt 2\n\nMore fixture taxonomy updates\n- *Category*: Refactor/test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-more updates to use shared fixture InteractiveContext",
          "is_bot": false,
          "headline": "Albrja/public health/mic 7256/pt 2 (#187)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-08T23:58:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1e1b703c706b454070e968aa0dc45f9890dab186",
          "body": "* Add shared README python-version sync tool (MIC-5670)\n\nDRY up the easylink-style README updater into vivarium-build-utils so each\nlib no longer copies its own update_readme.py.\n\n- Add vivarium.build_utils.readme module (stdlib-only): enumerated list,\n  \"requires Python X.Y+\" floor, and python=X.Y \n[…]\nminimal: README.rst only.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n* Update CHANGELOG.rst\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add shared README python-version sync tool (MIC-5670) (#185)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-08T23:05:26Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "319eaf8abb006eb780d2cc51c6b9e5d2781dcced",
          "body": "Albrja/public-health/fixture-taxonomy-pt1\n\nAdd shared InteractiveContext fixtures\n- *Category*: Test/Refactor\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7256\n\nChanges and notes\n-adds new InteractiveContext fixtures to share components to decrease runtime\n-update scope of fixtures to be more efficient",
          "is_bot": false,
          "headline": "Albrja/public-health/fixture-taxonomy-pt1 (#184)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-08T18:54:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "891cfb7105a41f46cba7eb79ddae1ff3f3c0db4c",
          "body": "Category: bugfix\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-7277\n\nChanges and notes\nMirrored distributions returned NaN for valid inputs because the computability window was in reflected space; this maps it back into data space via mirror_point - bound.\n\nTesting\nAdded test_mirrored_cdf_within_support_is_not_nan (parametrized over MirroredGumbel/MirroredGamma) is not NaN and equals 1 - underlying.cdf(mirror_point - x).\nExisting risk-distributions unit tests pass",
          "is_bot": false,
          "headline": "mirrored computability bounds bugfix (#176)",
          "author_name": "Hussain Jafari",
          "author_login": "hussain-jafari",
          "committed_at": "2026-07-08T18:35:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c859b932fd22fa8c8966c223ca6315a35fa659b7",
          "body": "Albrja/cluster-tools/bugfix/mic-7278/prevent-order-test-failures\n\nUpdate pandas and loguru fixtures to not leak state to later tests\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278\n\nChanges and notes\n-update pandas display settings to not leak to later tests\n-restore default loguru sink",
          "is_bot": false,
          "headline": "Albrja/cluster-tools/bugfix/mic-7278/prevent-order-test-failures (#177)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-07T16:44:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c6d8c5291e116df0d958d5cfb5c0c3c8303a1fe2",
          "body": "* ai-tools: add model-development workflow (MIC-6986)\n\nAdd /viv:model-development, the model-repo sibling of\n/viv:framework-development: a staged artifact->component->observer build\ndriven from an iteration plan, with blind parallel InteractiveContext\nverification, simulation-based checks, _review-c\n[…]\nranged up front rather than discovered mid-build.\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add model-development workflow (MIC-6986) (#137)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-06T19:43:20Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "66246238e340b98f8d4c8f07c673d7a29e0ff7bf",
          "body": "## Pin Vivarium Inputs to be compatible with monorepo\n\nChanges and notes\nPin Vivarium Inputs to be compatible with monorepo",
          "is_bot": false,
          "headline": "Pin Vivarium Inputs to be compatible with monorepo (#183)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-06T19:36:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "32e04d64fdf98603f6b217902486d28c9996185a",
          "body": "* Add PyPI classifiers to lib pyproject.toml files\n\nWhen migrating from per-repo setup.py to the monorepo pyproject.toml, the\ntrove classifiers were not carried over. Restore them per lib, adapted\nfrom each library's pre-migration setup.py, with the license classifier\ncorrected to BSD-3-Clause (seve\n[…]\n 4.2.8 -> 4.2.9\n- profiling:      0.4.18 -> 0.5.1\n\nCo-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>\n\n---------\n\nCo-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Add PyPI classifiers to lib pyproject.toml files (#154)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-07-06T19:10:29Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
        {
          "oid": "6265d9b8f77f0367d2ee0372b613dd8320052a55",
          "body": "…r with xdist\n\nAlbrja/testing-tuils/bugfix/prevent-malformed-data-with-ordering\n\nMore updates to prevent future CI failures from test ordering with xdist\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278",
          "is_bot": false,
          "headline": "Albrja/testing-tuils/bugfix/prevent-malformed-data-with-ordering (#175)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-02T22:38:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5994fa093023cb87dd7e5413443140cd0472076e",
          "body": "…0) (#182)",
          "is_bot": false,
          "headline": "Delete libs/compat from monorepo, drop profiling runtime dep (MIC-710…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-02T22:14:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "718dc75232003347a5817bd117133830bcc06003",
          "body": "…C-7100) (#181)",
          "is_bot": false,
          "headline": "Deprecate vivarium-compat: gut import hook, add retirement banner (MI…",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-02T22:09:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0682a1d3151bae5ac5ae5410efdd19ae76abd976",
          "body": "Albrja/bugfix/test-ordering-malformation\n\nClear context to prevent test failure on ordering\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7278\n\nChanges and notes\n-clear simulation context",
          "is_bot": false,
          "headline": "Albrja/bugfix/test-ordering-malformation (#174)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-02T20:06:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "53217794be0a3d2e3db9d2eafa9e930d0bf640a6",
          "body": null,
          "is_bot": false,
          "headline": "Sbachmei/build utils/mic 7086/leverage make targets (#173)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-07-01T21:51:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8a269051080fa677e1b6008ed2232c5758f4866f",
          "body": "Albrja/build-utils/mic-7854/Only use pip cache on push/PR\n\nOnly use pip cache on push/pr \n- *Category*: Build\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-6854\n\nChanges and notes\n-update builds to only use pip cache on push/pr",
          "is_bot": false,
          "headline": "Albrja/build-utils/mic-6854/Only use pip cache on push/PR (#172)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-01T20:22:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5b06329118069cebb273dcd0594a7ee63b9418d1",
          "body": "Albrja/public-health/mic-7255/Reduce pop size in tests\n\nReduce population size in test suites to improve runtime\n- *Category*: Test\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-7255\n\nChanges and notes\n-Reduce population size in test suites to improve runtime",
          "is_bot": false,
          "headline": "Albrja/public-health/mic-7255/Reduce pop size in tests (#170)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-07-01T17:11:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "af2c4b7721686229c47418669fb34d1a4bb2cb5e",
          "body": "Fix order dependent test fixtures\n\nFix order dependent test fixtures causes results to not be reproduced\n- *Category*: Bugfix\n- *JIRA issue*: https://jira.ihme.washington.edu/browse/MIC-XYZ\n\nChanges and notes\n-Fix order dependent test fixtures",
          "is_bot": false,
          "headline": "Fix order dependent test fixtures (#165)",
          "author_name": "Jim Albright",
          "author_login": "albrja",
          "committed_at": "2026-06-30T22:58:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "06720bb7f8f531e80f8e3210ad2f9020d1e7654c",
          "body": null,
          "is_bot": false,
          "headline": "Isolate cluster-tools mkdir test with tmp_path (#171)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T22:19:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b8fedcdf45dd9daa3588dfdfa0fcfd75ae353191",
          "body": "Category: feature\nJIRA issue: https://jira.ihme.washington.edu/browse/MIC-7116\n\nChanges and notes\nFeature: LookupTable accepts DataFrame/Series with lookup attributes on the row index.\nAPI: LookupTable.value_columns is now a pandas.Index (was list[str]).\nAPI: Interpolation.__init__ infers parameter \n[…]\nDeprecation: passing a flat DataFrame to build_table/set_data is deprecated.\nDeprecation: passing a Mapping to build_table/set_data is deprecated.\n\nTesting\nAdded/updated unit tests for indexed inputs.",
          "is_bot": false,
          "headline": "lookup table multiindex (#110)",
          "author_name": "Rajan Mudambi",
          "author_login": "rmudambi",
          "committed_at": "2026-06-30T21:34:01Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "d883f45f3262da4c3379db416c008882c5eb768d",
          "body": null,
          "is_bot": false,
          "headline": "Add support for no artifactory access in 'make build-env' (#162)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:37:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "40fc585814432a46dae506c97a14ce90d7bc0fb5",
          "body": null,
          "is_bot": false,
          "headline": "Remove pytest-xdist as pytest dependency (#169)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:14:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c34198c5a3db3bf95f51c5ab0c6a16d158a8f888",
          "body": null,
          "is_bot": false,
          "headline": "Include pytest-xdist in pytest group (#168)",
          "author_name": "Steve Bachmeier",
          "author_login": "stevebachmeier",
          "committed_at": "2026-06-30T19:08:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e774edc2fa26475c330773ffa9b4bb9c59050562",
          "body": "* ai-tools: fix doc drift found by /viv:repo-maintenance (MIC-7128)\n\nAudit of the ai-tools plugin docs and the root CLAUDE.md against their\nupstreams surfaced five stale references; correct them:\n\n- continuous-integration: GH runners install vivarium-build-utils from\n  PyPI, not git (build-utils its\n[…]\nRead the Docs API version\n\nBump ai-tools to 0.22.1.\n\nCo-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>\n\n* Update CHANGELOG.rst\n\n---------\n\nCo-authored-by: Claude Opus 4.8 <noreply@anthropic.com>",
          "is_bot": false,
          "headline": "Fix doc drift found by /viv:repo-maintenance (MIC-7128) (#164)",
          "author_name": "Patrick Nast",
          "author_login": "patricktnast",
          "committed_at": "2026-06-30T18:14:53Z",
          "body_truncated": true,
          "is_coding_agent": true
        },
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            "key": "community_health",
            "band": "good",
            "name": "Community health",
            "note": null,
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            "inputs": {
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        "metrics": [
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            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "signed_releases"
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                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
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            "value": 48,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 17,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 1,
              "scorecard_aggregate": 4.8
            },
            "components": [
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                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 3.8,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "11 out of 11 merged PRs checked by a CI test -- score normalized to 10",
                "points": 2.5,
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                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 8/11 approved changesets -- score normalized to 7",
                "points": 5.2,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 6 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
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                "points": 10,
                "status": "met",
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              },
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                "key": "dependency_update_tool",
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                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "project was created within the last 90 days. Please review its contents carefully",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
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                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
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                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
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                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
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                "details": [
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                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
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            ]
          },
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            "key": "high_risk_jurisdiction_exposure",
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            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
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              }
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            "inputs": {
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              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
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              "review_only_matches": 0,
              "assessed_self_published_locations": 5
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "moderate",
        "name": "AI Readiness",
        "value": 68,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
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            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
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            "inputs": {
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              "legible_history_share": 0.82,
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                "key": "agent_instructions",
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                "detail": "CLAUDE.md",
                "points": 45,
                "status": "met",
                "details": [
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                "key": "machine_readable_docs_llms_txt",
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                "detail": null,
                "points": 0,
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                "details": [],
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              },
              {
                "key": "legible_commit_history",
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                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "legible_history",
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            "key": "ai_verify_loop",
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            "note": null,
            "notes": [],
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              "has_tests": true,
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                "libs/cluster-tools/Makefile",
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                "libs/config-tree/Makefile",
                "libs/config-tree/docs/Makefile",
                "libs/dependencies/Makefile",
                "libs/engine/Makefile",
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                "libs/fuzzy-checker/Makefile",
                "libs/fuzzy-checker/docs/Makefile",
                "libs/gbd-mapping/Makefile",
                "libs/gbd-mapping/docs/Makefile",
                "libs/profiling/Makefile",
                "libs/public-health/Makefile",
                "libs/public-health/docs/Makefile",
                "libs/pytest-vivarium/Makefile",
                "libs/pytest-vivarium/docs/Makefile",
                "libs/risk-distributions/Makefile",
                "libs/risk-distributions/docs/Makefile",
                "libs/validation/Makefile",
                "libs/validation/docs/Makefile"
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                "libs/config-tree/src/vivarium/config_tree/py.typed",
                "libs/engine/src/vivarium/engine/py.typed",
                "libs/fuzzy-checker/src/vivarium/fuzzy_checker/py.typed",
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              "toolchain_manifests": [],
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                "status": "met",
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                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 22,
                "status": "met",
                "details": [],
                "max_points": 22
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              {
                "key": "lint_format_config",
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                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
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              {
                "key": "static_type_checking",
                "name": "Static type checking",
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                "points": 11,
                "status": "met",
                "details": [
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                ],
                "max_points": 11
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              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "33 of the last 100 commits agent-authored or agent-credited",
                "points": 10,
                "status": "met",
                "details": [
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                    "code": "agent_authored_commits",
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                      "sampled": 100
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                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
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                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
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            "key": "ai_code_legibility",
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            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 81,
            "inputs": {
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              "largest_source_bytes": 903070,
              "source_files_sampled": 485,
              "oversized_source_files": 7
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "Python with type-check config (libs/artifact/src/vivarium/artifact/py.typed, libs/cluster-tools/src/vivarium/cluster_tools/py.typed, libs/config-tree/src/vivarium/config_tree/py.typed, libs/engine/src/vivarium/engine/py.typed, libs/fuzzy-checker/src/vivarium/fuzzy_checker/py.typed, libs/pytest-vivarium/src/pytest_vivarium/py.typed, libs/risk-distributions/src/vivarium/risk_distributions/py.typed, libs/validation/src/vivarium/validation/py.typed)",
                "points": 27,
                "status": "partial",
                "details": [
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                    "code": "typecheck_config_language",
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                      "language": "Python"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "7/485 source files over 60KB",
                "points": 54.2,
                "status": "partial",
                "details": [
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                      "sampled": 485,
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                ],
                "max_points": 55
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          {
            "key": "ai_interfaces",
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            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
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                "points": 0,
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              },
              {
                "key": "mcp_server",
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                "points": 0,
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                "details": [],
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              },
              {
                "key": "runnable_examples",
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                "detail": "examples, notebooks",
                "points": 40,
                "status": "met",
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                      "files": "examples, notebooks"
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        ],
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      }
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    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
    "deps.dev does not index pypi:vivarium-engine@5.5.3; advisories assessed against the repository dependency graph instead"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-23T23:09:00.158533Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/i/ihmeuw/vivarium-suite.svg",
  "full_name": "ihmeuw/vivarium-suite",
  "license_state": "standard",
  "license_spdx": "BSD-3-Clause"
}