Public recordModerate
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-30 20:15 UTC
niekwit / damid-seq
DamMapper: Snakemake workflow for DamID-Seq analysis
niekwit/damid-seq holds a health index of 51 out of 100, placing it in the Moderate band. It scores highest on Vitality (62/100) and lowest on AI Readiness (17/100). It was last updated 31 days ago. A single contributor accounts for most of its recent work.
51
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
51
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
Niek WitPersonal account
11 followers60 public repossince Jul 2018University of Cambridge
This repository is owned by a personal account. A single-owner project carries more continuity risk than an organization-backed one.
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
62
Development activity
48At risk
How it's scored
| 18/36 | Push recency — last push 31 days ago |
| 3.5/36 | Commit cadence — 5/52 weeks with commits |
| 16.2/18 | Commit volume — 62 commits in the last year |
| 10/10 | OpenSSF Scorecard: Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
Inputs used
| commits_last_year | 62 |
| human_commit_share | 1 |
| days_since_last_push | 31 |
| active_weeks_last_year | 5 |
Release discipline
84Good
How it's scored
| 27/27 | Ships releases — 5 releases published |
| 36/36 | Release recency — latest release 31 days ago |
| 12.6/27 | Release cadence — a release every ~212.4 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 5 |
| latest_release_tag | v0.7.0 |
| releases_from_tags | no |
| days_since_latest_release | 31 |
| mean_days_between_releases | 212.4 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
29
Popularity & adoption
10Critical
How it's scored
| 9.8/60 | Stars — 5 stars |
| 0/25 | Forks — 1 forks |
| 0/15 | Watchers — 1 watchers |
Inputs used
| forks | 1 |
| stars | 5 |
| watchers | 1 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
50Moderate
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (MIT) |
| 0/18 | CONTRIBUTING guide |
| 0/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | no |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
48
Maintainer resilience (bus factor)
13Critical
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 0/22.5 | Commit distribution — top contributor authored 100% of commits |
| 1.4/13.5 | Contributor breadth — 1 contributors |
| 3/10 | OpenSSF Scorecard: Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 1 |
| top_contributor_share | 1 |
Issue & PR responsiveness
85Excellent
How it's scored
| 46.8/46.8 | Issue resolution — 100% of issues closed |
| 38.2/38.3 | PR acceptance — 1/1 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/16 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 1 |
| open_issues | 0 |
| closed_issues | 1 |
| issue_closed_ratio | 1 |
| closed_unmerged_prs | 0 |
Ownership & stewardship
54Moderate
How it's scored
| 10/30 | Ownership backing — personal (user) account |
| 0/20 | Verified domain — not applicable to user accounts |
| 7.8/25 | Owner reach — 11 followers of niekwit |
| 25/25 | Track record — 60 public repos, account ~8 yr old |
Inputs used
| followers | 11 |
| owner_type | User |
| is_verified | — |
| owner_login | niekwit |
| public_repos | 60 |
| account_age_days | 2,936 |
Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.
Engineering Quality
Are baseline engineering and documentation practices in place?
60
Engineering practices
44At risk
How it's scored
| 24/24 | CI workflows — 3 workflow(s) |
| 0/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 20/20 | OpenSSF Scorecard: CI-Tests — 1 out of 1 merged PRs checked by a CI test -- score normalized to 10 |
Inputs used
| has_ci | yes |
| has_tests | no |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Documentation
85Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 10/10 | Repository description |
| 10/10 | Topics — 3 topics |
| 10/10 | Wiki |
Inputs used
| topics | bioinformatics-pipeline, damid, snakemake-workflow |
| has_wiki | yes |
| homepage | — |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
53
Security posture
41At risk
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 2.5/2.5 | CI-Tests — 1 out of 1 merged PRs checked by a CI test -- score normalized to 10 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/16 approved changesets -- score normalized to 0 |
| 0.8/2.5 | Contributors — project has 1 contributing companies or organizations -- score normalized to 3 |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 7.5/7.5 | Maintained — 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| 0/5 | Packaging — no data |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 4.1 |
Excluded from scoring (no data or not applicable): packaging, signed_releases. Remaining weights renormalized.
Dependency advisories
100Excellent
How it's scored
| 35/35 | Direct dependencies free of known advisories — no direct dependency carries a known advisory |
| 0/25 | Indirect dependencies free of known advisories — transitive set not separable from development and test dependencies in this scope |
| 0/40 | No advisories left outstanding — no advisory carries a publication date |
Inputs used
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 2 |
| unassessed_packages | 0 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 2 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
17
Agent context & guidance
2Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 1.6/40 | Legible commit history — 3 of 100 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| legible_history_share | 0.03 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Verify loop (build / test / typecheck)
14Critical
How it's scored
| 0/18 | One-command bootstrap |
| 0/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 10/10 | Reproducible environment — Dockerfile |
| 4/10 | Demonstrated agent practice — 2 of the last 100 commits agent-authored or agent-credited |
| 0/8 | Automated maintenance — no automated dependency updates observed |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | no |
| lockfiles | — |
| has_dockerfile | yes |
| typed_language | no |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | 0.02 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Code legibility for models
55Moderate
How it's scored
| 0/45 | Type-checkable code — Python without a type-check config |
| 55/55 | Manageable file sizes — 0/15 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 3,693 |
| source_files_sampled | 15 |
| oversized_source_files | 0 |
Key facts
5GitHub stars
1contributors
62commits, last 12 months
31days since last push
5releases
1bus factor
0open issues
PyPIpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
More detail
OpenSSF Scorecard 4.1 / 10
4.1aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| 10 | CI-Tests | 1 out of 1 merged PRs checked by a CI test -- score normalized to 10 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/16 approved changesets -- score normalized to 0 |
| 3 | Contributors | project has 1 contributing companies or organizations -- score normalized to 3 |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 10 | Maintained | 30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 |
| n/a | Packaging | packaging workflow not detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
All dependencies 2
Full resolved dependency set from the GitHub dependency graph: 0 direct and 2 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|---|---|---|
| PyPI | sphinx | 7.3.7 | indirect |
| PyPI | sphinx-rtd-theme | 2.0.0 | indirect |
Dependency advisories 0
This repository publishes no package the index resolves, so its own dependency graph was assessed — 2 packages, which also include development and test pins that never ship: 0 carry known advisories, of which 0 are direct.
No known advisories affect the assessed dependencies.
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [
"bioinformatics-pipeline",
"damid",
"snakemake-workflow"
],
"is_fork": false,
"size_kb": 140060,
"has_wiki": true,
"homepage": null,
"languages": {
"R": 16919,
"Perl": 7222,
"Shell": 644,
"Python": 112679,
"Dockerfile": 9761
},
"pushed_at": "2026-06-29T09:19:33Z",
"created_at": "2023-10-21T20:02:14Z",
"owner_type": "User",
"updated_at": "2026-06-25T14:51:42Z",
"description": "DamMapper: Snakemake workflow for DamID-Seq analysis",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "main",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python",
"R"
]
},
"owner": {
"blog": null,
"name": "Niek Wit",
"type": "User",
"login": "niekwit",
"company": "University of Cambridge",
"location": "Cambridge, UK",
"followers": 11,
"avatar_url": "https://avatars.githubusercontent.com/u/41302859?v=4",
"created_at": "2018-07-16T17:17:01Z",
"is_verified": null,
"public_repos": 60,
"account_age_days": 2936
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.7.0",
"kind": "minor",
"published_at": "2026-06-29T09:19:33Z"
},
{
"tag": "v0.6.0",
"kind": "minor",
"published_at": "2025-05-15T14:58:42Z"
},
{
"tag": "v0.5.0",
"kind": "minor",
"published_at": "2024-07-05T12:20:41Z"
},
{
"tag": "v0.4.0",
"kind": "minor",
"published_at": "2024-04-12T08:28:20Z"
},
{
"tag": "v0.3.0",
"kind": "minor",
"published_at": "2024-03-01T21:53:55Z"
}
],
"recent_commits": [
{
"oid": "5e7a30822c6fe17bbd40af01a04734e3077f7499",
"body": null,
"is_bot": false,
"headline": "removed Zenodo badge",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-25T14:52:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "822ee0d13ebd0f98cfc0078f88d02e1fb778b000",
"body": null,
"is_bot": false,
"headline": "point to correct Docker image",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-25T14:52:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "71820c16046b90992eac2d80f959b8dca38edf5d",
"body": null,
"is_bot": false,
"headline": "added damidBind ref sample",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T20:10:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8b435a2c633ec4dcb5d6a42152cacbafe7f13f55",
"body": null,
"is_bot": false,
"headline": "updated",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:55:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "12a5ef70ea699a25becde3de167cdc42ebc53375",
"body": null,
"is_bot": false,
"headline": "improved docs, and added info on damidBind",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:54:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86738861086f857f3481ce02ff3ca5d64efd59c9",
"body": null,
"is_bot": false,
"headline": "scaffold skip",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:54:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "72482a9aa00d554d4825bdedc9d911a55629872c",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:53:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8dc22a78b0a6d5b5ddab498ab48958270290967f",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:53:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9e2d69d202b573d2b758df9951e8675e6e72a93e",
"body": null,
"is_bot": false,
"headline": "damidBind possible with multiple pairwise comparisons",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:21:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8df1e82ccd83f1b8009812e4816cef08bbd82db8",
"body": null,
"is_bot": false,
"headline": "output csv with mapping rates for NGS Tracker",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:21:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8ea72af481b80371c07b1e9e57c2fbdcd7d7c14f",
"body": null,
"is_bot": false,
"headline": "damidBind possible with multiple pairwise comparisons",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:21:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8d6540ab2c9f221ddd79569a60b2c6e190b45d24",
"body": null,
"is_bot": false,
"headline": "output csv with mapping rates for NGS Tracker",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T19:13:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a5934fbe3f44a01f0db5eff2b77735caf0d4d219",
"body": null,
"is_bot": false,
"headline": "Integration with NGS Tracker and multiple comaprisons with damidBind",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T14:30:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d8a3aaf3dc28a2fbae0dcac8541ea30e843344fa",
"body": null,
"is_bot": false,
"headline": "restrict SE test to index_bam rule, full PE test --> reduce runtime",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T07:11:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f32555f1d8bb3652b2a38475d581ee044bea62fa",
"body": null,
"is_bot": false,
"headline": "deleted one replicate to reduce runtime",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-24T07:10:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e9c4351047fb71f0bc4c1ec4c49eb06bca450df6",
"body": "feat: added damidBind analysis",
"is_bot": false,
"headline": "Merge pull request #2 from niekwit/damidbind",
"author_name": "Niek Wit",
"author_login": "niekwit",
"committed_at": "2026-06-24T05:18:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "39da6a83034155f5f71d0b15d13f9b79fba4f2f2",
"body": null,
"is_bot": false,
"headline": "lowered stringency for test pe",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T21:29:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "64b667aecd176909069376f7a62f15e7f92b92d4",
"body": null,
"is_bot": false,
"headline": "free disk space after se test",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T20:29:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fcfdab95fc3496f8968aeb549f7a4991a2eea28a",
"body": null,
"is_bot": false,
"headline": "use BiocManager::install()",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T19:40:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "62f82c694080c1be7076bb577de7a21d211099f4",
"body": null,
"is_bot": false,
"headline": "fixed bug with conda env cache",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T19:40:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7ba147a0a34eb1ff7e435e07e3694c2f51149353",
"body": null,
"is_bot": false,
"headline": "activated Perl peak calling for PE test data",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T19:17:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ec68cc9fd519f992922e05bcfc3869aa80c91bd9",
"body": null,
"is_bot": false,
"headline": "samples csv included for pe test",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T18:59:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "567695fa3bd2223122a8fae954a6ef479c8fb545",
"body": null,
"is_bot": false,
"headline": "added pe test fastq files",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T14:48:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "962ad149ed4be8f75c0dbbd089579fb0b0e8a6b6",
"body": null,
"is_bot": false,
"headline": "2 threads for alignment",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T14:19:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "28ab5c7a72f01987ac4c9053d2add7aaa61c6fd1",
"body": null,
"is_bot": false,
"headline": "no more use of pipe()",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T14:04:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "64730288282fa4f3218965ee33db84785f4ae95a",
"body": null,
"is_bot": false,
"headline": "disable pathway enrichment analysis for Dm data",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T14:03:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7fe4ef90a89eb2f4f4aa7aea72eccab1d68f2fe6",
"body": null,
"is_bot": false,
"headline": "fixed broken counter",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:53:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f9f7791a84a5dc06d84711c4c007d0d03ef429e1",
"body": null,
"is_bot": false,
"headline": "changed resource cpu counts to 1",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:45:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0bb461d65aebd15edc13bc9250c1606e1202dc1b",
"body": null,
"is_bot": false,
"headline": "enabled PE testing",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:44:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7bfa05ee74f407ee5923838a6606af086befcdd",
"body": "The old script installed damidBind into the damid conda environment.\ndamidBind now has its own environment (damidbind.yaml) with a dedicated\npost-deploy script, so this file is no longer needed.\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Remove damid.post-deploy.sh (damidBind moved to damidbind env)",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:27:56Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "5ed6d571605303590cea4027df80e35b1319cd98",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:19:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1ab38ac85373eb876f7f073c56bf6ac32dc2a37c",
"body": null,
"is_bot": false,
"headline": "import resources as alias",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:16:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "50cad760403440a9180a0226ce48842cbe3f470f",
"body": "Resolved conflicts in favour of damidbind branch:\n- Dockerfile/README: new damidbind conda env, updated hashes, pinned v1.1.1\n- Snakefile: keep VERSION = \"v0.7.0\"\n- damid.yaml: keep wget, drop r-biocmanager (moved to damidbind env)\n\nCo-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Merge origin/main into damidbind, keeping damidbind changes",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T13:10:19Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "6a8fc6859c0cdff81aeea0f380541718c7a2f34c",
"body": null,
"is_bot": false,
"headline": "damidBind working now with test data",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T12:59:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a73acac7b017a3e040aef644c0db59b09ecbf629",
"body": null,
"is_bot": false,
"headline": "pin version to v1.1.1",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T12:59:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c02cc82a1bd5caa58b45865df60060fad4b57adb",
"body": null,
"is_bot": false,
"headline": "added wget",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T08:10:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "975ba68c92867cca4e8dedee97e976ba80ec934b",
"body": null,
"is_bot": false,
"headline": "do not update other packages when installing BioVenn of damidBind",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-23T08:10:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0db9a39c16c3761c1c2efac5cf035c1d8c4a259b",
"body": null,
"is_bot": false,
"headline": "added damidBind",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-19T14:26:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "277fc92c748fecd3424541cee31619bc29b8b20f",
"body": null,
"is_bot": false,
"headline": "added damidBind rule",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-19T14:24:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "276d151289532397484aa0c44c7e1a82e4f286df",
"body": null,
"is_bot": false,
"headline": "Initial commit",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-19T14:24:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c9d8bc21312ae37a5d0e4514ee39abe8dafbe73",
"body": null,
"is_bot": false,
"headline": "installation of damidBind",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-19T14:23:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7e5614b72f5daa5bf26f6595b181d1ba1afe6332",
"body": null,
"is_bot": false,
"headline": "v0.7.0, keep just one Dockerfile",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-06-19T14:22:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "95310a6b67a380bfceb0552dae1b4b9ec189c440",
"body": "… only",
"is_bot": false,
"headline": "added post-deploy script to install damidBind when running with Conda…",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T10:10:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "101bb8b99f82f6f440bf2ddb9ff687b2123430d6",
"body": null,
"is_bot": false,
"headline": "fixed error with non-existing command",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:57:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "963e769767fa551aed5e27415ffb245d621defd1",
"body": null,
"is_bot": false,
"headline": "changed df concatenation to avoid FutureWarning",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:56:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "85f4f0e5cff0658b769fcf2fe45fd43019c3e095",
"body": null,
"is_bot": false,
"headline": "deleted",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:28:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86ae97895fea03c5cb16fcdd02585b1985f368f0",
"body": null,
"is_bot": false,
"headline": "updated",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:27:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9b39f4c762c7a83907c7f2c3fdadb8f3d7e9a18f",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:23:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "511e2cb8af4890fdf93c58e0ac43dddf704c6c44",
"body": null,
"is_bot": false,
"headline": "one Dockerfile",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:22:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad29d903b04d23c1e774ac9b473c6632079de7a1",
"body": null,
"is_bot": false,
"headline": "added biocmanager",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T08:00:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f58f6caf56b5f32c3c7d4e265155a814333247df",
"body": null,
"is_bot": false,
"headline": "r-base=4.3.2",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:47:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cab659bd0d64c9ce467b976e3d1b5ff575d45131",
"body": null,
"is_bot": false,
"headline": "changed dir name",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:40:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e285842bdd58cdf6e39a9a25f630b90f0af333b6",
"body": null,
"is_bot": false,
"headline": "added missing validations",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:40:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cdac1091c4107439e730f413bd836ea08d125e2b",
"body": null,
"is_bot": false,
"headline": "changed replacement string",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:39:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "597d2b52216017344925d7229bf316e2910fd869",
"body": null,
"is_bot": false,
"headline": "moved code to general_functions.smk",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:38:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a0fd79ded8d513da51481d058ced2d8613f04e14",
"body": null,
"is_bot": false,
"headline": "bumped to v0.7.0",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2026-05-18T07:36:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c86e1bf512f3c64e5d2b1a9927199736c35db9b9",
"body": "Added citation information for DamMapper.",
"is_bot": false,
"headline": "Add citation section to README",
"author_name": "Niek Wit",
"author_login": "niekwit",
"committed_at": "2025-10-15T20:00:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "71dad9a10e08174f9bda575aa4953127d49bd2e4",
"body": null,
"is_bot": false,
"headline": "changed git version to 2.49",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-08-29T08:55:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5d2921628c21eeca0aa704b0572abb8f3e3ecc3",
"body": null,
"is_bot": false,
"headline": "changed r version",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-08-29T08:18:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "021f73b3166835fb09f8e65676d18f9a4c96f9fa",
"body": null,
"is_bot": false,
"headline": "added git",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-08-29T08:00:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88946ca4ba759b75f1ce01dd9ba8d559b0378e89",
"body": null,
"is_bot": false,
"headline": "point to specific commit",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-08-28T14:37:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f8cf4168ceae10e609ff90906ea7dada00814278",
"body": null,
"is_bot": false,
"headline": "added splash screen",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-08-28T13:21:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e9cd843fd175f6b6ef9854240b02f6b3daaad1e",
"body": null,
"is_bot": false,
"headline": "replaced damid-seq with DamMapper",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-06-04T09:07:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0d7cce4762506e9a6e6fc5156077c16853c981d5",
"body": null,
"is_bot": false,
"headline": "replaced damid-seq with DamMapper",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-06-04T09:02:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c072bc27194e45b584b6f5d5a506b36ad6365f4e",
"body": null,
"is_bot": false,
"headline": "updated",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-05-14T07:17:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "252ae1d9b0102aa9c1b3da115c4d80ec8ca8f2d0",
"body": null,
"is_bot": false,
"headline": "changed name",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-15T14:23:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "15cfeca08063e3e47fee509fbcf3f09466d9d9e2",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T14:49:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "50cfe153f52ccf64fb2cf5ef0d3fc3776f38ee4d",
"body": null,
"is_bot": false,
"headline": "fixed path issue attempt 4",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T14:46:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5ad401e4ba84788f8c5fcae6241652d1b3f93642",
"body": null,
"is_bot": false,
"headline": "fixed path issue attempt 3",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T14:37:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9a2253200955995afa44efb963938499108530c",
"body": null,
"is_bot": false,
"headline": "fixed path issue attempt 2",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T14:21:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5de8ded48fede3dfb89b2b858e305b01264f93c",
"body": null,
"is_bot": false,
"headline": "updated name",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:26:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "154427fe2668ad5f8284acab59472f49f05f83b8",
"body": null,
"is_bot": false,
"headline": "black formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:25:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5cb2f9452875cab849deb7f7f333dd38f9161ac8",
"body": null,
"is_bot": false,
"headline": "Air formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:24:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86e342944af1cb9b8a91d48ab7b87b91fbfe227d",
"body": null,
"is_bot": false,
"headline": "snakefmt formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:18:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ebe4205e0ae3399678ef9373de4e892223c1cebe",
"body": null,
"is_bot": false,
"headline": "sort gatc gff file",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:18:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "076c707704ece74c789ec59d5216997de6fdda33",
"body": null,
"is_bot": false,
"headline": "changed path",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:12:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d499bd2b774c417cb5ea41ee5c83063e0cd87430",
"body": null,
"is_bot": false,
"headline": "added warning after completion",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-11T13:10:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "edeba6a6ca106fe47df429fb948f9c73c401c818",
"body": null,
"is_bot": false,
"headline": "added mm38",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:24:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a1b8c47d7cadb39462f5cc1e38f120c632161eaa",
"body": null,
"is_bot": false,
"headline": "added mm38",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:24:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "18907a06f937acc19a307d730e107e96100c2427",
"body": null,
"is_bot": false,
"headline": "check for plasmid function",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:24:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "78e45e5dd239a5e8aa80f040185f5ade5a0fe72c",
"body": null,
"is_bot": false,
"headline": "simplified frip",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:22:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a129736b69864c42f342dc4c4d54f60603cbbc36",
"body": null,
"is_bot": false,
"headline": "updated wrapper to v5.8.3",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:22:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9bff7ddda224d4c15ae84c0df194c7b8ce9f591b",
"body": null,
"is_bot": false,
"headline": "simplified frip",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:22:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c81f1dd21674ffcb3bacd333b6160f8b1e85bacb",
"body": null,
"is_bot": false,
"headline": "updated wrapper to v5.8.3",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:20:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "019132e43da0766a830e075c275f6932d0b9234f",
"body": null,
"is_bot": false,
"headline": "updated wrapper to v5.8.3",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:20:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f2da3fc8a71b596f21c1f670b282375a496a3876",
"body": null,
"is_bot": false,
"headline": "removed redundant code",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:19:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "17da854cd478da5014120d6702bfbd0da349a1e8",
"body": null,
"is_bot": false,
"headline": "fixed issues with input/output and added samtools flag",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-07T10:19:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "414c13500fd81ba1cefe1bc1a1b9bc40eb01b7e2",
"body": null,
"is_bot": false,
"headline": "Initial commit",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-03T09:54:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9fe66b06549280d2507c1c41e2f987288bf59fe1",
"body": null,
"is_bot": false,
"headline": "simplified",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-02T14:27:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7c56263b0def4bf7f22fb01ff53ccd1bca79ce82",
"body": null,
"is_bot": false,
"headline": "added pybedtools",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-02T11:17:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "813a5dc484a5daf1091a88d0921bbcd88a839afc",
"body": null,
"is_bot": false,
"headline": "added pybedtools",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-02T10:55:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9d478360ff4f2977b05651ef7de896c003255818",
"body": null,
"is_bot": false,
"headline": "remove duplicate peaks",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-04-01T13:21:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ed0a8cb99f22defa6527eb799f0d54670dca1d97",
"body": null,
"is_bot": false,
"headline": "black formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-03-10T10:52:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "deb586c3d549d21b02a32a29f45e0e2643b9cf60",
"body": null,
"is_bot": false,
"headline": "wrapper v5.8.3",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-03-10T10:16:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6a281190424bcd26ea35e1c3adda3e8694546e03",
"body": null,
"is_bot": false,
"headline": "Changed versions of wrappers and Snakemake",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-03-10T10:15:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9061bfb94957721b0a8c7c1d617bcf75327e680f",
"body": null,
"is_bot": false,
"headline": "black formatting",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-03-10T09:16:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "237dc19ac6df1d6388e0a2d3713b40c8bcf228f8",
"body": null,
"is_bot": false,
"headline": "deleted",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2025-03-10T08:48:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c94e0364796bc6fff37973edbfed5a48b9ce347f",
"body": null,
"is_bot": false,
"headline": "increased CPU count for bowtie2",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2024-11-22T15:32:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da49a6b8e45d554e56fc22d2bf9672e1671b6f6b",
"body": null,
"is_bot": false,
"headline": "lowered CPU count",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2024-11-22T15:12:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "457ca120a0ccfc632547ce915af1364a8b54db95",
"body": null,
"is_bot": false,
"headline": "working again",
"author_name": "niekwit",
"author_login": "niekwit",
"committed_at": "2024-11-22T14:58:28Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 5,
"commits_last_year": 62,
"latest_release_at": "2026-06-29T09:19:33Z",
"latest_release_tag": "v0.7.0",
"releases_from_tags": false,
"days_since_last_push": 31,
"active_weeks_last_year": 5,
"days_since_latest_release": 31,
"mean_days_between_releases": 212.4
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 42,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 1,
"stars": 5,
"watchers": 1,
"fork_history": {
"days": [
{
"date": "2026-04-04",
"count": 1
}
],
"complete": true,
"collected": 1,
"total_forks": 1
},
"star_history": null,
"open_issues_and_prs": 0
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": true,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 3693,
"source_files_sampled": 15,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"docs/requirements.txt"
],
"advisories": {
"error": null,
"scope": "repository_graph",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 2,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [
{
"name": "sphinx",
"direct": false,
"version": "7.3.7",
"ecosystem": "pypi"
},
{
"name": "sphinx-rtd-theme",
"direct": false,
"version": "2.0.0",
"ecosystem": "pypi"
}
],
"collected": true,
"truncated": false,
"total_count": 2,
"direct_count": 0,
"indirect_count": 2
}
},
"maintainership": {
"issues": {
"open_prs": 0,
"merged_prs": 1,
"open_issues": 0,
"closed_ratio": 1,
"closed_issues": 1,
"closed_unmerged_prs": 0
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "niekwit",
"commits": 514,
"avatar_url": "https://avatars.githubusercontent.com/u/41302859?v=4"
}
],
"contributors_sampled": 1,
"top_contributor_share": 1
},
"quality_signals": {
"has_ci": true,
"has_tests": false,
"ci_workflows": [
"conventional-prs.yml",
"main.yml",
"release-please.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 0,
"reason": "branch protection not enabled on development/release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 10,
"reason": "1 out of 1 merged PRs checked by a CI test -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/16 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 3,
"reason": "project has 1 contributing companies or organizations -- score normalized to 3",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 10,
"reason": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": null,
"reason": "packaging workflow not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "5e7a30822c6fe17bbd40af01a04734e3077f7499",
"ran_at": "2026-07-30T20:15:44Z",
"aggregate_score": 4.1,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-06-29T09:04:38Z",
"oldest_open_prs": [],
"last_merged_pr_at": "2026-06-24T05:18:08Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": []
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/niekwit/damid-seq",
"host": "github.com",
"name": "damid-seq",
"owner": "niekwit"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 51,
"inputs": {
"security": 53,
"vitality": 62,
"community": 29,
"governance": 48,
"engineering": 60
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "moderate",
"name": "Vitality",
"value": 62,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "at_risk",
"name": "Development activity",
"note": null,
"notes": [],
"value": 48,
"inputs": {
"commits_last_year": 62,
"human_commit_share": 1,
"days_since_last_push": 31,
"active_weeks_last_year": 5
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 31 days ago",
"points": 18,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 31
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "5/52 weeks with commits",
"points": 3.5,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 5
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "62 commits in the last year",
"points": 16.2,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 62
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "good",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 84,
"inputs": {
"releases_count": 5,
"latest_release_tag": "v0.7.0",
"releases_from_tags": false,
"days_since_latest_release": 31,
"mean_days_between_releases": 212.4
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "5 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 5
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 31 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 31
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~212.4 days",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 212.4
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 35,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 35 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 35
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "critical",
"name": "Community & Adoption",
"value": 29,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "critical",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 10,
"inputs": {
"forks": 1,
"stars": 5,
"watchers": 1,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "5 stars",
"points": 9.8,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 5
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "1 forks",
"points": 0,
"status": "missed",
"details": [
{
"code": "forks",
"params": {
"count": 1
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "1 watchers",
"points": 0,
"status": "missed",
"details": [
{
"code": "watchers",
"params": {
"count": 1
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "at_risk",
"name": "Sustainability & Governance",
"value": 48,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "critical",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 13,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 1,
"top_contributor_share": 1
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 100% of commits",
"points": 0,
"status": "missed",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 100
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "1 contributors",
"points": 1.4,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 1
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 1 contributing companies or organizations -- score normalized to 3",
"points": 3,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "excellent",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"merged_prs": 1,
"open_issues": 0,
"closed_issues": 1,
"issue_closed_ratio": 1,
"closed_unmerged_prs": 0
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "100% of issues closed",
"points": 46.8,
"status": "met",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 100
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "1/1 decided PRs merged",
"points": 38.2,
"status": "met",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 1,
"decided": 1
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/16 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": "Excluded from scoring (no data or not applicable): Verified domain. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"verified_domain"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 54,
"inputs": {
"followers": 11,
"owner_type": "User",
"is_verified": null,
"owner_login": "niekwit",
"public_repos": 60,
"account_age_days": 2936
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "personal (user) account",
"points": 10,
"status": "partial",
"details": [
{
"code": "owner_personal",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": "not applicable to user accounts",
"points": 0,
"status": "excluded",
"details": [
{
"code": "not_applicable_to_user_accounts",
"params": {}
}
],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "11 followers of niekwit",
"points": 7.8,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 11,
"login": "niekwit"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "60 public repos, account ~8 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 60
}
},
{
"code": "account_age_years",
"params": {
"years": 8
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "moderate",
"name": "Engineering Quality",
"value": 60,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "at_risk",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 44,
"inputs": {
"has_ci": true,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "3 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 3
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "1 out of 1 merged PRs checked by a CI test -- score normalized to 10",
"points": 20,
"status": "met",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"topics": [
"bioinformatics-pipeline",
"damid",
"snakemake-workflow"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "3 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 3
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 53,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Packaging, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"packaging",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 41,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4.1
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "1 out of 1 merged PRs checked by a CI test -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/16 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 1 contributing companies or organizations -- score normalized to 3",
"points": 0.8,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): Indirect dependencies free of known advisories, No advisories left outstanding. Remaining weights renormalized. Matched 2 resolved dependencies against OSV. This repository publishes no package the index resolves, so the repository dependency graph was assessed instead. That graph mixes development and test pins with shipped dependencies, so only the declared runtime dependencies are scored; transitive findings are reported as context and excluded from the score. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"indirect_dependencies_free_of_known_advisories",
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_repository",
"params": {
"assessed": 2
}
},
{
"code": "advisories_repo_graph_caveat",
"params": {}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 2,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "transitive set not separable from development and test dependencies in this scope",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_scope_not_separable",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 2,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 2
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 17,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 2,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.03,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "3 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 1.6,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 3,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 14,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": true,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0.02,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "2 of the last 100 commits agent-authored or agent-credited",
"points": 4,
"status": "partial",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 2,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 3693,
"source_files_sampled": 15,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/15 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 15,
"oversized": 0
}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-30T20:15:58.825981Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/n/niekwit/damid-seq.svg",
"full_name": "niekwit/damid-seq",
"license_state": "standard",
"license_spdx": "MIT"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics.