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#bioinformatics-pipeline

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

6 records
Tagged “bioinformatics-pipeline”Ranked by health index
crates.io · PyPI · npm
91Excellenthealth index
stjude-rust-labs/sprocket
A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).
Rust★ 208↓ 731/moSep 15, 2026
Apache-2.0Sep 15, 2026 · metrics 2.10.0
PyPI · Go · npm
89Excellenthealth index
bacalhau-project/bacalhau
Community-driven, simple, yet powerful framework for fast, cost-effective distributed Compute over Data.
Go · Python★ 870↓ 103/moSep 13, 2026
Apache-2.0Sep 13, 2026 · metrics 2.10.0
crates.io
63Moderatehealth index
ngless-toolkit/ngless
NGLess: NGS with less work
Rust★ 152Oct 18, 2026
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
50Moderatehealth index
niekwit/damid-seq
DamMapper: Snakemake workflow for DamID-Seq analysis
Python · R★ 5Sep 14, 2026
MITSep 14, 2026 · metrics 2.10.0
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45Weakhealth index
MPUSP/snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
R · Python★ 8Sep 13, 2026
MITSep 13, 2026 · metrics 2.10.0
Maven
42Weakhealth index
GenomiqueENS/eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
Java★ 56Sep 18, 2026
Custom licenseSep 18, 2026 · metrics 2.10.0