Public recordGood
Software health reportschema 0.27.0 · metrics 1.13.0 · 2026-07-26 02:23 UTC
scverse / napari-spatialdata
Interactive visualization of spatial omics data
scverse/napari-spatialdata holds a health index of 74 out of 100, placing it in the Good band. It scores highest on Engineering Quality (94/100) and lowest on AI Readiness (58/100). It was last updated 23 days ago. 3 contributors account for most of its recent work.
74
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At risk ceiling of 49. AI Readiness sits outside the overall score.
74
Excellent85-100Exemplary; meets essentially all checked criteria
Good70-84Healthy; minor gaps
Moderate50-69Acceptable with notable gaps; review recommended
At risk30-49Significant weaknesses; adoption warrants caution
Critical1-29Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
Ownership
scverseOrganization
1,520 followers86 public repossince Nov 2021
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Package ecosystems
| Registry | Package | Version | Downloads / mo | Versions | Last publish |
|---|---|---|---|---|---|
| PyPI | napari-spatialdata | 0.7.2 | - | 28 | 23 days ago |
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
68
Development activity
52Moderate
How it's scored
| 28.8/36 | Push recency — last push 23 days ago |
| 6.2/36 | Commit cadence — 9/52 weeks with commits |
| 12.6/18 | Commit volume — 24 commits in the last year |
| 4/10 | OpenSSF Scorecard: Maintained — 4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4 |
Inputs used
| commits_last_year | 24 |
| human_commit_share | 0.77 |
| days_since_last_push | 23 |
| active_weeks_last_year | 9 |
Release discipline
92Excellent
How it's scored
| 27/27 | Ships releases — 29 releases published |
| 36/36 | Release recency — latest release 23 days ago |
| 19.8/27 | Release cadence — a release every ~71.7 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 29 |
| latest_release_tag | v0.7.2 |
| releases_from_tags | no |
| days_since_latest_release | 23 |
| mean_days_between_releases | 71.7 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
65
Popularity & adoption
48At risk
How it's scored
| 31.4/60 | Stars — 87 stars |
| 11.3/25 | Forks — 24 forks |
| 5.8/15 | Watchers — 12 watchers |
Inputs used
| forks | 24 |
| stars | 87 |
| watchers | 12 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
85Excellent
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (BSD-3-Clause) |
| 18/18 | CONTRIBUTING guide |
| 13.5/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| has_contributing | yes |
| has_issue_template | no |
| has_code_of_conduct | yes |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
77
How it's scored
| 36/54 | Bus factor — 3 contributor(s) cover half of all commits |
| 16.6/22.5 | Commit distribution — top contributor authored 26% of commits |
| 13.5/13.5 | Contributor breadth — 15 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 12 contributing companies or organizations |
Inputs used
| bus_factor | 3 |
| contributors_sampled | 15 |
| top_contributor_share | 0.262 |
Issue & PR responsiveness
62Moderate
How it's scored
| 27.1/46.8 | Issue resolution — 58% of issues closed |
| 34.6/38.3 | PR acceptance — 208/230 decided PRs merged |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 1/23 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 208 |
| open_issues | 68 |
| closed_issues | 94 |
| issue_closed_ratio | 0.58 |
| closed_unmerged_prs | 22 |
Ownership & stewardship
75Good
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 22.9/25 | Owner reach — 1,520 followers of scverse |
| 22.3/25 | Track record — 86 public repos, account ~4 yr old |
Inputs used
| followers | 1,520 |
| owner_type | Organization |
| is_verified | — |
| owner_login | scverse |
| public_repos | 86 |
| account_age_days | 1,698 |
Package maintenance
100Excellent
How it's scored
| 25/25 | Published & resolvable — 1 package(s) on pypi |
| 35/35 | Publish recency — latest publish 23 days ago |
| 20/20 | Version history — 28 published versions |
| 20/20 | Not deprecated — active, not deprecated or yanked |
Inputs used
| packages | napari-spatialdata |
| ecosystems | pypi |
| any_deprecated | no |
| min_days_since_publish | 23 |
Engineering Quality
Are baseline engineering and documentation practices in place?
94
Engineering practices
90Excellent
How it's scored
| 24/24 | CI workflows — 4 workflow(s) |
| 24/24 | Tests present |
| 16/16 | Linter config — tox.ini |
| 9.6/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 16/20 | OpenSSF Scorecard: CI-Tests — 17 out of 21 merged PRs checked by a CI test -- score normalized to 8 |
Inputs used
| has_ci | yes |
| has_tests | yes |
| has_editorconfig | no |
| has_linter_config | yes |
| has_precommit_config | yes |
Documentation
100Excellent
How it's scored
| 30/30 | README |
| 25/25 | Documentation directory |
| 15/15 | Documentation / homepage site — https://spatialdata.scverse.org/projects/napari/en/latest/ |
| 10/10 | Repository description |
| 10/10 | Topics — 5 topics |
| 10/10 | Wiki |
Inputs used
| topics | napari, napari-plugin, spatial-analysis, spatial-omics, visualization |
| has_wiki | yes |
| homepage | https://spatialdata.scverse.org/projects/napari/en/latest/ |
| has_readme | yes |
| has_docs_dir | yes |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
62
Security posture
53Moderate
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — no data |
| 2/2.5 | CI-Tests — 17 out of 21 merged PRs checked by a CI test -- score normalized to 8 |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 1/23 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 12 contributing companies or organizations |
| 10/10 | Dangerous-Workflow — no dangerous workflow patterns detected |
| 7.5/7.5 | Dependency-Update-Tool — update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 3/7.5 | Maintained — 4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4 |
| 5/5 | Packaging — packaging workflow detected |
| 0/5 | Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
| 0/5 | SAST — SAST tool is not run on all commits -- score normalized to 0 |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — detected GitHub workflow tokens with excessive permissions |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 16 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 2 |
| scorecard_aggregate | 5.3 |
Excluded from scoring (no data or not applicable): branch_protection, signed_releases. Remaining weights renormalized.
Dependency advisories
100Excellent
How it's scored
| 35/35 | Direct dependencies free of known advisories — no direct dependency carries a known advisory |
| 25/25 | Indirect dependencies free of known advisories — no indirect dependency carries a known advisory |
| 0/40 | No advisories left outstanding — no advisory carries a publication date |
Inputs used
| source | osv |
| advisories | 0 |
| affected_packages | 0 |
| assessed_packages | 184 |
| unassessed_packages | 0 |
| affected_by_severity | none |
| direct_affected_packages | 0 |
Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:napari-spatialdata@0.7.2 runtime dependency closure — what installing the published package pulls in — 184 packages. Reachability is not analyzed.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score.
58
Agent context & guidance
35At risk
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 35.3/40 | Legible commit history — 51 of 77 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| legible_history_share | 0.662 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
How it's scored
| 18/18 | One-command bootstrap — docs/Makefile |
| 22/22 | Automated tests |
| 11/11 | Lint / format config — tox.ini |
| 11/11 | Static type checking — .mypy.ini |
| 0/10 | Reproducible environment |
| 2/10 | Demonstrated agent practice — 1 of the last 100 commits agent-authored or agent-credited |
| 8/8 | Automated maintenance — 4 of the last 100 commits are automated dependency updates |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0 |
Inputs used
| has_nix | no |
| has_tests | yes |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | docs/Makefile |
| has_devcontainer | no |
| has_linter_config | yes |
| typecheck_configs | .mypy.ini |
| agent_commit_share | 0.01 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0.04 |
How it's scored
| 27/45 | Type-checkable code — Python with type-check config (.mypy.ini) |
| 55/55 | Manageable file sizes — 0/39 source files over 60KB |
Inputs used
| primary_language | Python |
| largest_source_bytes | 52,059 |
| source_files_sampled | 39 |
| oversized_source_files | 0 |
Machine-readable interfaces
40At risk
How it's scored
| 0/40 | API schema (OpenAPI/GraphQL/proto) |
| 0/20 | MCP server |
| 40/40 | Runnable examples — examples, notebooks |
Inputs used
| example_dirs | examples, notebooks |
| has_mcp_signal | no |
| api_schema_files | — |
Key facts
87GitHub stars
15contributors
24commits, last 12 months
23days since last push
29releases
3bus factor
68open issues
PyPIpackage ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
More detail
Star and fork history 0 ★ / 24 ⇿
0Stars
24Forks
28Releases
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Major 0Minor 6Patch 17
Each point covers 4 days.
OpenSSF Scorecard 5.3 / 10
5.3aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| n/a | Branch-Protection | internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md |
| 8 | CI-Tests | 17 out of 21 merged PRs checked by a CI test -- score normalized to 8 |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 1/23 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 12 contributing companies or organizations |
| 10 | Dangerous-Workflow | no dangerous workflow patterns detected |
| 10 | Dependency-Update-Tool | update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 4 | Maintained | 4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4 |
| 10 | Packaging | packaging workflow detected |
| 0 | Pinned-Dependencies | dependency not pinned by hash detected -- score normalized to 0 |
| 0 | SAST | SAST tool is not run on all commits -- score normalized to 0 |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| 0 | Token-Permissions | detected GitHub workflow tokens with excessive permissions |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Direct dependencies 26
| Registry | Package | Version constraint | Manifest |
|---|---|---|---|
| PyPI | anndata | >=0.12.0 | setup.cfg |
| PyPI | click | — | setup.cfg |
| PyPI | cycler | — | setup.cfg |
| PyPI | dask | >=2025.2.0 | setup.cfg |
| PyPI | geopandas | — | setup.cfg |
| PyPI | loguru | — | setup.cfg |
| PyPI | matplotlib | — | setup.cfg |
| PyPI | napari | >=0.6.2 | setup.cfg |
| PyPI | napari-matplotlib | >=3.0.2 | setup.cfg |
| PyPI | numba | — | setup.cfg |
| PyPI | numpy | — | setup.cfg |
| PyPI | packaging | — | setup.cfg |
| PyPI | pandas | — | setup.cfg |
| PyPI | pillow | — | setup.cfg |
| PyPI | pyqtgraph | — | setup.cfg |
| PyPI | qtpy | — | setup.cfg |
| PyPI | scanpy | — | setup.cfg |
| PyPI | scipy | — | setup.cfg |
| PyPI | shapely | — | setup.cfg |
| PyPI | scikit-learn | — | setup.cfg |
| PyPI | spatialdata | >=0.7.2 | setup.cfg |
| PyPI | superqt | — | setup.cfg |
| PyPI | typing_extensions | >=4.8.0 | setup.cfg |
| PyPI | vispy | — | setup.cfg |
| PyPI | xarray | — | setup.cfg |
| PyPI | xarray-datatree | — | setup.cfg |
All dependencies 0
Full resolved dependency set from the GitHub dependency graph: 0 direct and 0 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.
| Registry | Package | Version | Relation |
|---|
Dependency advisories 0
Installing pypi:napari-spatialdata@0.7.2 pulls in 184 packages, direct and transitive: 0 carry known advisories, of which 0 are direct dependencies.
No known advisories affect the assessed dependencies.
An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.
Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [
"napari",
"napari-plugin",
"spatial-analysis",
"spatial-omics",
"visualization"
],
"is_fork": false,
"size_kb": 53299,
"has_wiki": true,
"homepage": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"languages": {
"Python": 344187
},
"pushed_at": "2026-07-02T20:45:31Z",
"created_at": "2022-04-02T10:27:54Z",
"owner_type": "Organization",
"updated_at": "2026-07-02T07:27:23Z",
"description": "Interactive visualization of spatial omics data",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "https://scverse.org",
"name": "scverse",
"type": "Organization",
"login": "scverse",
"company": null,
"location": null,
"followers": 1520,
"avatar_url": "https://avatars.githubusercontent.com/u/95305807?v=4",
"created_at": "2021-11-30T17:11:32Z",
"is_verified": null,
"public_repos": 86,
"account_age_days": 1698
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.7.2",
"kind": "patch",
"published_at": "2026-07-02T20:45:31Z"
},
{
"tag": "v0.7.1",
"kind": "patch",
"published_at": "2026-05-06T16:08:37Z"
},
{
"tag": "v0.7.0",
"kind": "minor",
"published_at": "2026-01-30T12:54:59Z"
},
{
"tag": "v0.6.0",
"kind": "minor",
"published_at": "2025-11-03T17:50:09Z"
},
{
"tag": "v0.5.7",
"kind": "patch",
"published_at": "2025-08-15T21:45:50Z"
},
{
"tag": "v0.5.6",
"kind": "patch",
"published_at": "2025-04-21T18:48:33Z"
},
{
"tag": "v0.5.5",
"kind": "patch",
"published_at": "2025-01-20T15:12:29Z"
},
{
"tag": "v0.5.4post0",
"kind": "other",
"published_at": "2024-11-26T18:05:44Z"
},
{
"tag": "v0.5.4",
"kind": "patch",
"published_at": "2024-11-26T16:22:10Z"
},
{
"tag": "v0.5.3",
"kind": "patch",
"published_at": "2024-09-25T09:08:16Z"
},
{
"tag": "v0.5.2post1",
"kind": "other",
"published_at": "2024-08-16T13:45:38Z"
},
{
"tag": "v0.5.2post0",
"kind": "other",
"published_at": "2024-08-16T12:43:40Z"
},
{
"tag": "v0.5.2",
"kind": "patch",
"published_at": "2024-08-16T12:25:41Z"
},
{
"tag": "v0.5.1",
"kind": "patch",
"published_at": "2024-08-07T13:09:17Z"
},
{
"tag": "v0.5.0post1",
"kind": "other",
"published_at": "2024-07-05T14:03:54Z"
},
{
"tag": "v0.5.0post0",
"kind": "other",
"published_at": "2024-07-03T16:08:37Z"
},
{
"tag": "v0.5.0",
"kind": "minor",
"published_at": "2024-07-03T10:25:10Z"
},
{
"tag": "v0.4.1",
"kind": "patch",
"published_at": "2024-03-30T17:08:26Z"
},
{
"tag": "v0.4.0",
"kind": "minor",
"published_at": "2024-03-24T04:35:37Z"
},
{
"tag": "v0.3.1",
"kind": "patch",
"published_at": "2023-11-11T18:54:47Z"
},
{
"tag": "v0.3.0",
"kind": "minor",
"published_at": "2023-11-09T21:37:46Z"
},
{
"tag": "v0.2.8",
"kind": "patch",
"published_at": "2023-10-31T05:14:49Z"
},
{
"tag": "v0.2.7",
"kind": "patch",
"published_at": "2023-10-02T15:36:39Z"
},
{
"tag": "v0.2.6",
"kind": "patch",
"published_at": "2023-07-13T15:45:45Z"
},
{
"tag": "v0.2.5",
"kind": "patch",
"published_at": "2023-07-13T15:17:37Z"
},
{
"tag": "v0.2.4",
"kind": "patch",
"published_at": "2023-05-23T16:16:46Z"
},
{
"tag": "v0.2.3",
"kind": "patch",
"published_at": "2023-05-11T11:16:05Z"
},
{
"tag": "v0.2.1",
"kind": "patch",
"published_at": "2023-05-04T11:02:35Z"
},
{
"tag": "v0.2.0",
"kind": "minor",
"published_at": "2023-05-04T10:40:36Z"
}
],
"recent_commits": [
{
"oid": "a1150de77d9c42467ab0f27b4aa94a048765707e",
"body": "Replace `Window._dock_widgets` with the public `dock_widgets` property\n(removing now-redundant `.widget()` calls since the public API returns\nthe inner widget directly). Remove dead-code assignments to\n`DataModel._region_key` and `DataModel._instance_key`, whose backing\nfields are never read — the public properties derive both values from\n`get_table_keys(self.adata)` — and drop the unused dataclass fields.\n\nCo-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Fix deprecation GUI warnings for private napari attribute access (#396)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-05-15T11:56:29Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "3dfb2c00394826c680bc088a5744d8255e5868b0",
"body": "* fix the Issue #31\n\n* fix Issue #31\n\n* fix Issue #31\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* address review feedback PR#393\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": false,
"headline": "Support 3D visualization for points and 2.5D shapes (#393)",
"author_name": "Ahmet Sarıgün",
"author_login": "asarigun",
"committed_at": "2026-05-15T08:51:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88edca3fb841316f3fd4f901db5eaf9b83ed075f",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/pre-commit/mirrors-mypy: v1.19.1 → v1.20.2](https://github.com/pre-commit/mirrors-mypy/compare/v1.19.1...v1.20.2)\n- [github.com/psf/black-pre-commit-mirror: 25.12.0 → 26.3.1](https://github.com/psf/black-pre-commit-mirror/compare/25.12.\n[…]\n see https://pre-commit.ci\n\n* fix pre-commit\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#384)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-05-12T16:06:40Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "3a8b87fb616cd76b10056ee4dbda9f55c8441652",
"body": "…tes (#394)\n\nBumps the actions group with 4 updates in the / directory: [actions/upload-artifact](https://github.com/actions/upload-artifact), [actions/download-artifact](https://github.com/actions/download-artifact), [actions/github-script](https://github.com/actions/github-script) and [codecov/cod\n[…]\npe: version-update:semver-major\n dependency-group: actions\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group across 1 directory with 4 upda…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2026-05-05T14:34:42Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a5b423fd9db691caa46e95f9b4c410d5d1b77a28",
"body": "* patch headless tests due to vispy\n\n* improve docstring\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* fix precommit; fix spatialdata pre-release dep\n\n---------\n\nCo-authored-by: Ubuntu <ubuntu@machine.denbi.prod>\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Patch headless tests due to `QT_QPA_PLATFORM=offscreen` edgecase (#390)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-03-23T14:52:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "07ff794ac8470cbf8d4a50d6320c984363460259",
"body": "* fix docs links\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* cleanup import\n\n* attempt fix ci\n\n* add lowerbound spatialdata\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Fix docs links (#389)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-02-24T15:37:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6747bf035d791a6bc0eee9b49f48eb9fc1d31896",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' of https://github.com/scverse/napari-spatialdata",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-28T12:25:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c5d9fec4fdd2f1201319c7a442b859bb0ce1fecc",
"body": "* fix scanpy set_default_colors_for_categorical_obs\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* fix\n\n* fix\n\n* fix\n\n* fix tests\n\n* fix tests macos/linux\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Ubuntu <ubuntu@machine.denbi.prod>",
"is_bot": false,
"headline": "Fix scanpy set_default_colors_for_categorical_obs (#385)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-27T17:51:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9a49914032dfaa07dfc5369be6a94637633602eb",
"body": null,
"is_bot": false,
"headline": "fix scanpy set_default_colors_for_categorical_obs",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-27T15:41:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2e64014856f259b83c77e64db7cc4d278d2f5189",
"body": "* better 3D and 2.5D support for raster and vector data\n\n* fix mypy; workaround qt test (command double registration)\n\n* fix deprecated API\n\n* remove dask pin\n\n* cleanup\n\n* add tests for 3D points, 2.5D shapes; improve contribution guide\n\n* bump min spatialdata",
"is_bot": false,
"headline": "Better 3D and 2.5D support for raster and vector data (#366)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T16:31:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5daf882f8322923c8498713ba8dc82b132f2edb7",
"body": "* fix tests cleanup\n\n* remove test_aaa.py",
"is_bot": false,
"headline": "fix tests cleanup (#357)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T14:17:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "75268eb105ecc73f8dcb3f33f81eed16040c41c7",
"body": null,
"is_bot": false,
"headline": "add ui for changing point size in scatterplot (#383)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T13:54:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a67669f8d55977e1f365c65d70f1126833e63adc",
"body": "…tes (#380)\n\nBumps the actions group with 5 updates in the / directory:\n\n| Package | From | To |\n| --- | --- | --- |\n| [actions/checkout](https://github.com/actions/checkout) | `4` | `6` |\n| [actions/setup-python](https://github.com/actions/setup-python) | `5` | `6` |\n| [actions/upload-artifact](htt\n[…]\n dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group across 1 directory with 5 upda…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2026-01-06T13:53:47Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "39bbb38052ff59db4fa588228793f94c0bc3b034",
"body": "updates:\n- [github.com/pre-commit/mirrors-mypy: v1.17.1 → v1.19.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.17.1...v1.19.1)\n- https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror\n- [github.com/psf/black-pre-commit-mirror: 25.1.0 → 25.12.0](https://github.com/psf\n[…]\nade/compare/v3.20.0...v3.21.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#370)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-01-06T13:53:03Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "b39fc55104adde4b8dd3bdc61fa9795d65f80c62",
"body": "* bump mins: python, spatialdata, dask\n\n* fix min dask\n\n* bump napari-matplotlib, bump python mins\n\n* fix test scatterplot hover\n\n* fix seeds in tests\n\n* attempt fix readthedocs install\n\n* attempt fix readsthedocs\n\n* pre-release install in benchmark job\n\n* bump anndata and spatialdata mins\n\n* fix\n\n* attempt fix benchmark job\n\n* remove benchmarks section from test.yaml",
"is_bot": false,
"headline": "bump mins: python, spatialdata, dask (#377)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-03T14:15:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "232ac934755c402f5bcc555880dd356f1ab876af",
"body": null,
"is_bot": false,
"headline": "Update spatialdata pre version in setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-01T23:06:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c95e3e2711843b3884d3f4d63e754e2c742ff4fd",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' of https://github.com/scverse/napari-spatialdata",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-09-13T15:02:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03b58f35b5ead24f07e92c7562a1e0b5a91475c5",
"body": null,
"is_bot": false,
"headline": "fix docs typo",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-09-13T15:01:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1391e9efe7c2c6626132382ff21b870262aaa12f",
"body": "* simplify conditional\n\n* small changes for zarrv3 spatialdata\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "small updates for zarrv3 branch (#374)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-09-13T12:29:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8db31af9c9386707ab7b5c06d48c7963a71cafbd",
"body": null,
"is_bot": false,
"headline": "Update release.yml",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-15T21:48:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fde2382a8d8bf6b05b7042a082ce24868a88c8be",
"body": null,
"is_bot": false,
"headline": "fix skip tests if napari offscreen",
"author_name": "Luca Marconato",
"author_login": null,
"committed_at": "2025-08-15T18:51:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "77c08bf5a487a86cc9a6fb82afc5390b8519e4d3",
"body": null,
"is_bot": false,
"headline": "attempt napari tests with offscreen",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-15T18:47:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0cbb9f3c66ddd1e0a4d3e43dd63afd6d31bbfbc9",
"body": null,
"is_bot": false,
"headline": "better comments",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-14T15:53:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "29c1c1411bb77b7d44b4a11fa7091da7464cc5f3",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/pre-commit/mirrors-mypy: v1.15.0 → v1.17.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.15.0...v1.17.1)\n- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0.\n[…]\nmmand double registration)\n\n* fix pre-commit\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate + fix qt tests (#360)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-08-14T15:50:44Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "0429cf1ab2dc6ae647bff231f632f3dbe92d748e",
"body": "* simplify conditional\n\n* bump version, change to ctrl+l\n\n* add bermuda\n\n* add blog post\n\n* correct doc reference\n\n* use export_figure\n\n* remove argument\n\n* match type hint\n\n* verify path\n\n* update artefact path\n\n* revert viewer theme change\n\n* check readthedocs with pydanticv2\n\n* constrain dask\n\n* constrain dask\n\n* attempt fix mac\n\n* add warning\n\n* change caplog index\n\n* change access of deprecated _dock_widgets access",
"is_bot": false,
"headline": "Update napari to 0.6.2 and add bermuda (#368)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-07-04T09:22:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aea2eb559c536aae64ba1a57dc71d26c2c66db28",
"body": null,
"is_bot": false,
"headline": "Update README.md: add pypi and anaconda badges (#358)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-04-23T02:08:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fbab2563fe21d6aee6d050a940eb16a5346e8fbc",
"body": null,
"is_bot": false,
"headline": "fix docs urls (#356)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-04-21T18:36:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "77624cc154658385f91210d3adbf3c05508a16c9",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.5 → v0.11.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.5...v0.11.6)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#355)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-21T18:27:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4b9896afc991ae23dffecf78004dac06e3145ac8",
"body": "* simplify conditional\n\n* don't fetch specific branch\n\n* attempt fix\n\n* another attempt\n\n* reattempt fix benchmark on main\n\n* benchmark latest release commit directly\n\n* check whether on main\n\n* only latest commit",
"is_bot": false,
"headline": "Benchmark fix (#354)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-04-18T15:12:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dfc1a889ef7e17887180fa7ddc7ad83a821eeaf8",
"body": "* simplify conditional\n\n* don't fetch specific branch\n\n* attempt fix\n\n* another attempt",
"is_bot": false,
"headline": "Benchmark fix (#353)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-04-18T13:51:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "62751ce1feadb0048dddbb425e9cbf6a2ba297b9",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.9.6 → v0.11.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.6...v0.11.5)\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* add viewer c\n[…]\nse viewer\n\n* ensure fetching main\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Wouter-Michiel Vierdag <michiel.vierdag@embl.de>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#349)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-18T10:31:55Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "949d630665a49b542a1e0c0a1f43864356f369e0",
"body": null,
"is_bot": false,
"headline": "Update LICENSE",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:07:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e10e103c4df757f570998c5f47661f5d0eefe55a",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:06:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc7bf6186df488726d63efd18d6015f0963fa521",
"body": null,
"is_bot": false,
"headline": "Fix exception due to adata being none (#345)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-02-17T23:18:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "602db3c97fe666cb688b9927393110f4d5e5c479",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.14.1 → v1.15.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.14.1...v1.15.0)\r\n- [github.com/psf/black: 24.10.0 → 25.1.0](https://github.com/psf/black/compare/24.10.0...25.1.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.9.2 → v0.9.6](http\n[…]\ntral-sh/ruff-pre-commit/compare/v0.9.2...v0.9.6)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#343)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-02-17T12:35:04Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "0b3044a79da596cf386d75da9e30542fc98642a4",
"body": "* simplify conditional\r\n\r\n* temporarily constrain napari version",
"is_bot": false,
"headline": "Temporarily constrain napari version (#347)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-17T09:01:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "36fe3b96e829f45b39012238a5d1f4d8e1087eae",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.9.1 → v0.9.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.1...v0.9.2)\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#342)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-01-21T01:39:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6e643fef434a413528f324ab7f97b96fa8ecc192",
"body": null,
"is_bot": false,
"headline": "Update release.yml with labels from \"keepachangelog\"",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-20T17:39:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ed4c59ac54163adc14e950243a5b4e783ce9212",
"body": null,
"is_bot": false,
"headline": "Update release.yml",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-20T15:06:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a7b5faa7252fab7ced9b71e40cb65e3dfb3d6c29",
"body": null,
"is_bot": false,
"headline": "Improved release process and its documentation (#338)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-13T19:57:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c4f0620a9492566d5e877c5fb4362770995aa342",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.14.0 → v1.14.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.14.0...v1.14.1)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.8.4 → v0.9.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.4...v0.9.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#340)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-01-13T19:57:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "271d4bd39702105c879c32702880c7256fbaf359",
"body": null,
"is_bot": false,
"headline": "fix plot categorical with colors, on labels (#337)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-26T22:19:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4666968eec014097f764e81337b82212157175c3",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.14.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.14.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.8.3 → v0.8.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.3...v0.8.4)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#336)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-12-26T16:34:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0c6abf247b354c2e1f4a601e3d3375f7ad1b3be8",
"body": "* Sort elements and coordinate systems in widgets\r\n\r\n* Sort table names\r\n\r\n* fix test, update changelog\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Sort elements in widgets (#285)",
"author_name": "aeisenbarth",
"author_login": "aeisenbarth",
"committed_at": "2024-12-17T19:04:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e19e94c87dfe99519c7c90b43850616f19410e97",
"body": "* re-enable showing circles as points\r\n\r\n* fix pre-commit local ignore\r\n\r\n* fixes circles as points",
"is_bot": false,
"headline": "Small fix/circles as points (#334)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-17T18:43:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2bc64cb0fa9009a2cf496ce0d842dafeb3796fed",
"body": "* re-enable showing circles as points\r\n\r\n* fix pre-commit local ignore",
"is_bot": false,
"headline": "re-enable showing circles as points (#309)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-17T18:31:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "801c50e9238345e4011167c3b6c9e3827dd13689",
"body": "* move loading data to separate thread to prevent freezing viewer\r\n\r\n* workaround for macos\r\n\r\n* do not fail test fast\r\n\r\n* disable thread loading in test\r\n\r\n* add proper test for threading messaging\r\n\r\n* improve macos guard\r\n\r\n* improve guard because of new napari release fixing blas problem\r\n\r\n* fix typo in napari name\r\n\r\n* fix pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Move loading data to separate thread to prevent freezing viewer (#283)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-12-17T16:44:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "802b8129c9f2c27bca2ec17875c398a9592d308b",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.2 → v1.13.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.2...v1.13.0)\r\n- [github.com/psf/black: 24.8.0 → 24.10.0](https://github.com/psf/black/compare/24.8.0...24.10.0)\r\n- [github.com/pre-c\n[…]\n\r\n\r\n* fix precommit\r\n\r\n* fix pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#323)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-12-17T16:23:56Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "776c26e99f78da9d5ff8f1e79624cc7ff4db4ec3",
"body": "…s group (#332)\n\nBumps the actions group with 1 update: [codecov/codecov-action](https://github.com/codecov/codecov-action).\r\n\r\n\r\nUpdates `codecov/codecov-action` from 4 to 5\r\n- [Release notes](https://github.com/codecov/codecov-action/releases)\r\n- [Changelog](https://github.com/codecov/codecov-acti\n[…]\nersion-update:semver-major\r\n dependency-group: actions\r\n...\r\n\r\nSigned-off-by: dependabot[bot] <support@github.com>\r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump codecov/codecov-action from 4 to 5 in the action…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2024-12-17T15:47:27Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a5191c7d81d994467b4f2ad93a13a345925e6008",
"body": "* simplify conditional\r\n\r\n* basic pyqt graph\r\n\r\n* mouse actions test\r\n\r\n* editable rois added\r\n\r\n* working gradient widget\r\n\r\n* discret data works with lut widget\r\n\r\n* discrete widget prototype\r\n\r\n* discrete color widget works\r\n\r\n* Rectangular selection implemented\r\n\r\n* complex shapes columns saved \n[…]\nauthored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "pyqt scatter widget (#270)",
"author_name": "Kasia Kedziora",
"author_login": "fjorka",
"committed_at": "2024-12-17T15:38:20Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "b3ae66c325d151249243eb9f6906032bd38fc9f6",
"body": null,
"is_bot": false,
"headline": "Update setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-11-26T17:18:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94a73ab7b66fb029796fcc7e2a5c8e39cd0dae63",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-11-26T16:21:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "914e540d917a359f5238543b51c71db410c3ecfa",
"body": "* simplify conditional\r\n\r\n* add utility functions for datatree\r\n\r\n* update python version\r\n\r\n* migrate pre-commit config\r\n\r\n* adjust to multiscale_spatial_image\r\n\r\n* fix pre-release bencharmark CI; attempt0\r\n\r\n* fix pre-commit\r\n\r\n* prettier\r\n\r\n---------\r\n\r\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Xarray datatree support (#329)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-11-26T15:15:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a38e2866c9195866fecf1eca0f911d52587b163a",
"body": "* Add functions to interactive\r\n\r\nIn this commit two functions are added to the interactive class.\r\nget_layer grabs the layer name and returns the layer if it matches the user input.\r\nadd_text_to_polygons adds annotations to the chosen polygons/shapes layer\r\n\r\n* [pre-commit.ci] auto fixes from pre-c\n[…]\nauthored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": false,
"headline": "Add functions to interactive (#315)",
"author_name": "Minh Trinh",
"author_login": "minhtien-trinh",
"committed_at": "2024-10-09T13:39:34Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "7d49c2388850b1aff7d2bac2ab1ef3f22c45b88b",
"body": "Co-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Add teardown steep for example benchamark (#311)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-10-03T16:07:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9b8bb4a9465c5b0ce8b1d4d69c269cd8d3f9ae37",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.1 → v1.11.2](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.1...v1.11.2)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.7 → v0.6.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.7.\n[…]\nit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#300)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-10-02T18:31:32Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "f84b79bcbc2616ecf1736720f4ed029724b3d10c",
"body": "…(#320)",
"is_bot": false,
"headline": "Fix instance id shift bug; fix obsm viz; fix background color labels …",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-10-01T11:18:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8df1eb632b4f95042ef9b31d07a4546a97e17680",
"body": "* fix radii of transformed circles\r\n\r\n* fix pre-commit\r\n\r\n* fix mypy\r\n\r\n* remove last NDArray, replaced with ArrayLike\r\n\r\n* removed another NDArrayA",
"is_bot": false,
"headline": "fix radii of transformed circles (#318)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-30T12:27:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "803c35e632eb17732c17de90d02794f5c2e6065b",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-25T09:04:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3dc4e5b354288de248a59bb6801659ad4a5d4061",
"body": "* fix bug adata in model not being reset\r\n\r\n* changelog",
"is_bot": false,
"headline": "Fix bug adata in model not being reset (#317)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-25T08:39:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4385a20a1439358d016d76a9a38c210066f0826e",
"body": null,
"is_bot": false,
"headline": "extra fix annotations",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-11T12:01:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c3cd50adecd6d71911c0439c0bac02463996797c",
"body": null,
"is_bot": false,
"headline": "hotfix annotations",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-11T11:49:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "885b5fae92b6c177f298b60be53dcab667c0c91d",
"body": "* test to reproduce #302\r\n\r\n* fix single scale images\r\n\r\n---------\r\n\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": false,
"headline": "test to reproduce #302 (#303)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-26T20:22:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "14a93d7a391107c42b9a85ac0fec4fbc85a6e532",
"body": "…ory (#307)",
"is_bot": false,
"headline": "Fetch information about latest release informtion from proper reposit…",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-26T15:03:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "33fd676ca65f674e6670294d7adedf0af9d81300",
"body": "* bug categorical annotatoins points\r\n\r\n* added test for continuous column",
"is_bot": false,
"headline": "bug categorical annotatoins points (#304)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-23T11:16:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "060d5d0e145cc4819ba20427436e5a6ab43a03a4",
"body": "* fix #282 (error in channel selection due to #153)\r\n\r\n* cleanup commented code\r\n\r\n* fix test slider python 3.11",
"is_bot": false,
"headline": "fix #282 (error in channel selection due to #276) (#301)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-19T18:57:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "65d27a7e921960851f4bb9646076dcb401c5862e",
"body": "* minimum 3.9.2, testing against 3.11\r\n\r\n* fix pre-commit",
"is_bot": false,
"headline": "Minimum 3.9.2, testing against 3.11 (#299)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-19T12:50:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "de09eb4c3c7a62b72f7bab2e45c0c8dc763fdaab",
"body": "* ci(dependabot): bump the actions group with 4 updates\r\n\r\nBumps the actions group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [actions/setup-python](https://github.com/actions/setup-python), [codecov/codecov-action](https://github.com/codecov/codecov-action) and [action\n[…]\n-\r\n\r\nSigned-off-by: dependabot[bot] <support@github.com>\r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group with 4 updates (#292)",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2024-08-19T09:50:38Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a4f762638503d59a10b34885f02b282c2b55c1a9",
"body": null,
"is_bot": false,
"headline": "Fix paths in benchmarks (#297)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-19T09:49:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "13e69dfc664f7c80b354260641dadf11460104bd",
"body": "* add basic structure for asv\r\n\r\n* fix checking last release\r\n\r\n* attempt fix libmambapy related ci failure\r\n\r\n* reverted mamba attempted fix\r\n\r\n* update readme and add PR example\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Add basic structure for asv performance measurement (#289)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T15:58:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69105e01cd30f07fce8e94d03ca13ee88f6566af",
"body": null,
"is_bot": false,
"headline": "Fix deploy by using local directory (#295)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T13:44:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7c4d7de7cd46bd18ccf784c20786c0bda23143da",
"body": null,
"is_bot": false,
"headline": "Fix deploy by read dist path form output of previous steep (#294)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T12:42:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "069c0d47ea2c4239238166b112fa63ff9c7bb188",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-16T12:24:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f64dc327f0a2f969f6381df960def22d8799caf1",
"body": "* modernize release workflow\r\n\r\n* fix file path",
"is_bot": false,
"headline": "Modernize release workflow use most recent tool (#291)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T12:15:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b50df555d9c0e1335c99afc27bc7b63bf0324934",
"body": null,
"is_bot": false,
"headline": "miant: Add depenabot configuration (#290)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-15T11:51:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "682c26e8c01f7ca85c0dcc22dbb47b63a14223bc",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.6 → v0.5.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.6...v0.5.7)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#288)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-13T11:14:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00901e0f76fb01f1038182b8ea850629b23b9ca5",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-07T13:08:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0895642183a87ea7e86cc23800123b5c198b0451",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.0 → v1.11.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.0...v1.11.1)\r\n- [github.com/psf/black: 24.4.2 → 24.8.0](https://github.com/psf/black/compare/24.4.2...24.8.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.5 → v0.5.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.5...v0.5.6)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#281)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-06T21:55:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9f9c3cfe17280924b29dc5052071153a3a486f5",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.4 → v0.5.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.4...v0.5.5)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#280)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-31T16:23:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "221aa524d5653de3356df6b629eae54e858d635c",
"body": null,
"is_bot": false,
"headline": "docs: Fix installation instruction (#279)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-31T16:22:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "66b655567799e908b99c7b916036d56534dfb29d",
"body": null,
"is_bot": false,
"headline": "fix: use `current_point` instead of `displayed` (#278)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-24T07:17:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c1383034478ed5e0a7fc94cb6f682aa928c377d",
"body": "Co-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": false,
"headline": "fix return type _adjust_channels_order() (#269)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-22T21:55:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b8bdb6ee0effdafb48bcb017d43d34d0584fc8e1",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.10.1 → v1.11.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.10.1...v1.11.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.2 → v0.5.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.2...v0.5.4)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#277)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-22T18:51:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a57eebbf72b430c997dc7b96aab514308a7c3b2",
"body": "* fix: fix adjusting contrast limits for rgb data\r\n\r\n* fix pre-commit\r\n\r\n* Apply suggestions from code review\r\n\r\n* Update src/napari_spatialdata/_viewer.py\r\n\r\n---------\r\n\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": false,
"headline": "fix: fix adjusting contrast limits for rgb data (#276)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-22T14:00:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2f4f425a828c146fc1d33c5adb2dff9a1fbcc51e",
"body": "* Change RGB detection to be based on channel names, not number of channels\r\n\r\n* Ensure c-dim is ordered as r, g, b, a\r\n\r\n* Don't transpose c when c_coords are empty\r\n\r\n* adjust test for rgb\r\n\r\n* allow artifacts in git workflow\r\n\r\n* remove old plots\r\n\r\n* add new plots\r\n\r\n* fix tests\r\n\r\n---------\r\n\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>\r\nCo-authored-by: Wouter-Michiel Vierdag <michiel.vierdag@embl.de>",
"is_bot": false,
"headline": "Change RGB detection to be based on channel names (#153)",
"author_name": "aeisenbarth",
"author_login": "aeisenbarth",
"committed_at": "2024-07-22T11:20:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "39768254a59d26e870b7725aff01de0e9b8e7455",
"body": null,
"is_bot": false,
"headline": "Silence warning in data reader (#275)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-22T08:55:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ede93a854680bc93153c23e37561b0b2b4b85d6a",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.1 → v0.5.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.1...v0.5.2)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#274)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-16T14:33:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d6e55f93a1cc783e5ea61b62e93ff3f682642241",
"body": null,
"is_bot": false,
"headline": "added xarray-datatree dependency",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-12T18:18:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "27da97279e557b9c8f72a0615ad566ae2f1c3f55",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.0 → v0.5.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.0...v0.5.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#267)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-09T22:18:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "01e12da226223d49133375643901e7dbad96f868",
"body": null,
"is_bot": false,
"headline": "fix min spatialdata version",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-05T13:59:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c0aa988ad1ffbf94b78f05c47c33448588d933e",
"body": null,
"is_bot": false,
"headline": "fix url (#266)",
"author_name": "Giovanni Palla",
"author_login": "giovp",
"committed_at": "2024-07-03T13:45:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4f1242294758764bef0aabad315e07d899d5c48e",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.10.0 → v1.10.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.10.0...v1.10.1)\r\n- [github.com/asottile/blacken-docs: 1.16.0 → 1.18.0](https://github.com/asottile/blacken-docs/compare/1.16.0...1.18.0\n[…]\nre/v0.4.8...v0.5.0)\r\n\r\n* fir pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#256)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-03T10:46:41Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "7fe90dd6b95d9070d4ad7f0b4e2a94dbab8b6acc",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-03T10:24:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e0085a8fd1bc57a860292350a25d5e8f2276f90e",
"body": "* simplify conditional\r\n\r\n* avoid duplicates, correct overwrite message\r\n\r\n* fix issues\r\n\r\n* only delete table if shapes element name is still the same\r\n\r\n* delete old shapes if table_name stays the same\r\n\r\n* export not backed\r\n\r\n* change to warning\r\n\r\n* disallow editing first class",
"is_bot": false,
"headline": "Fix annotation (#261)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-27T14:33:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c667d898b3f4ee9a823aa850b1578d158b3714ab",
"body": "* simplify conditional\r\n\r\n* fix contrast limits",
"is_bot": false,
"headline": "fix contrast limits (#265)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-27T13:15:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d45606bf9d2bc13cb270119d3740c915c93b402",
"body": null,
"is_bot": false,
"headline": "simplify conditional (#264)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-26T09:32:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e2d02dd2bc8e9f27cefca59aeda4b8ac0da947f6",
"body": null,
"is_bot": false,
"headline": "Update setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-06-24T14:57:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4bc96052014cbdeb932b6fc0fd7d9245ec06e6da",
"body": "* simplify conditional\r\n\r\n* use get_element_annotators",
"is_bot": false,
"headline": "Get element annotators (#259)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-24T14:00:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d83d07cfc8b800dc686c051341ed135b2d77b5d",
"body": "* simplify conditional\r\n\r\n* initial adoptation of DataArray, DataTree\r\n\r\n* fix test",
"is_bot": false,
"headline": "Support DataArray, DataTree (#257)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-24T13:53:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d66297a1feec729ea7c2fe8750485b9c8fe26261",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.4.7 → v0.4.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.7...v0.4.8)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#251)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-06-15T23:07:32Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 29,
"commits_last_year": 24,
"latest_release_at": "2026-07-02T20:45:31Z",
"latest_release_tag": "v0.7.2",
"releases_from_tags": false,
"days_since_last_push": 23,
"active_weeks_last_year": 9,
"days_since_latest_release": 23,
"mean_days_between_releases": 71.7
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": true,
"health_percentage": 62,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "napari-spatialdata",
"exists": true,
"license": "BSD-3-Clause",
"keywords": [
"Development Status :: 2 - Pre-Alpha",
"Framework :: napari",
"Intended Audience :: Developers",
"License :: OSI Approved :: BSD License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Topic :: Software Development :: Testing"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/napari-spatialdata/",
"is_deprecated": false,
"latest_version": "0.7.2",
"repository_url": "https://github.com/scverse/napari-spatialdata",
"versions_count": 28,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2022-07-06T14:57:06.453889Z",
"latest_published_at": "2026-07-02T20:46:11.164742Z",
"latest_version_yanked": null,
"days_since_latest_publish": 23
}
]
},
"popularity": {
"forks": 24,
"stars": 87,
"watchers": 12,
"fork_history": {
"days": [
{
"date": "2022-07-13",
"count": 1
},
{
"date": "2022-07-28",
"count": 1
},
{
"date": "2023-03-08",
"count": 1
},
{
"date": "2023-04-26",
"count": 1
},
{
"date": "2023-04-27",
"count": 1
},
{
"date": "2023-08-24",
"count": 1
},
{
"date": "2023-10-23",
"count": 1
},
{
"date": "2023-11-29",
"count": 1
},
{
"date": "2024-05-17",
"count": 1
},
{
"date": "2024-05-30",
"count": 1
},
{
"date": "2024-06-15",
"count": 1
},
{
"date": "2024-07-19",
"count": 1
},
{
"date": "2024-09-09",
"count": 1
},
{
"date": "2024-10-03",
"count": 1
},
{
"date": "2024-10-09",
"count": 1
},
{
"date": "2025-04-22",
"count": 1
},
{
"date": "2025-06-23",
"count": 1
},
{
"date": "2025-08-06",
"count": 1
},
{
"date": "2025-09-19",
"count": 1
},
{
"date": "2025-09-22",
"count": 1
},
{
"date": "2025-11-28",
"count": 1
},
{
"date": "2025-12-11",
"count": 1
},
{
"date": "2026-04-14",
"count": 1
},
{
"date": "2026-05-15",
"count": 1
}
],
"complete": true,
"collected": 24,
"total_forks": 24
},
"star_history": null,
"open_issues_and_prs": 72
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"examples",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [
".mypy.ini"
],
"toolchain_manifests": [],
"largest_source_bytes": 52059,
"source_files_sampled": 39,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml",
"setup.cfg"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 184,
"malicious_count": 0,
"assessed_package": "pypi:napari-spatialdata@0.7.2",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "anndata",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.12.0"
},
{
"name": "click",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "cycler",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "dask",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=2025.2.0"
},
{
"name": "geopandas",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "loguru",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "matplotlib",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "napari",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.6.2"
},
{
"name": "napari-matplotlib",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=3.0.2"
},
{
"name": "numba",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "numpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "packaging",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pandas",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pillow",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pyqtgraph",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "qtpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scanpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scipy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "shapely",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scikit-learn",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "spatialdata",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.7.2"
},
{
"name": "superqt",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "typing_extensions",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=4.8.0"
},
{
"name": "vispy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "xarray",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "xarray-datatree",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [],
"collected": true,
"truncated": false,
"total_count": 0,
"direct_count": 0,
"indirect_count": 0
}
},
"maintainership": {
"issues": {
"open_prs": 4,
"merged_prs": 208,
"open_issues": 68,
"closed_ratio": 0.58,
"closed_issues": 94,
"closed_unmerged_prs": 22
},
"bus_factor": 3,
"bot_contributors": 2,
"top_contributors": [
{
"type": "User",
"login": "LucaMarconato",
"commits": 80,
"avatar_url": "https://avatars.githubusercontent.com/u/2664412?v=4"
},
{
"type": "User",
"login": "giovp",
"commits": 72,
"avatar_url": "https://avatars.githubusercontent.com/u/25887487?v=4"
},
{
"type": "User",
"login": "melonora",
"commits": 43,
"avatar_url": "https://avatars.githubusercontent.com/u/22346363?v=4"
},
{
"type": "User",
"login": "totmar101",
"commits": 41,
"avatar_url": "https://avatars.githubusercontent.com/u/107241132?v=4"
},
{
"type": "User",
"login": "rahulbshrestha",
"commits": 36,
"avatar_url": "https://avatars.githubusercontent.com/u/22676591?v=4"
},
{
"type": "User",
"login": "Czaki",
"commits": 13,
"avatar_url": "https://avatars.githubusercontent.com/u/3826210?v=4"
},
{
"type": "User",
"login": "aeisenbarth",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/54448967?v=4"
},
{
"type": "User",
"login": "kevinyamauchi",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/1120672?v=4"
},
{
"type": "User",
"login": "berombau",
"commits": 4,
"avatar_url": "https://avatars.githubusercontent.com/u/8041507?v=4"
},
{
"type": "User",
"login": "asarigun",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/47702994?v=4"
}
],
"contributors_sampled": 15,
"top_contributor_share": 0.262
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"benchmarks.yml",
"benchmarks_report.yml",
"release.yml",
"test.yml"
],
"has_docs_dir": true,
"linter_configs": [
"tox.ini"
],
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 8,
"reason": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 1/23 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 12 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 10,
"reason": "update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 4,
"reason": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "a1150de77d9c42467ab0f27b4aa94a048765707e",
"ran_at": "2026-07-26T02:23:29Z",
"aggregate_score": 5.3,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": true
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-02T20:45:47Z",
"oldest_open_prs": [
{
"number": 395,
"created_at": "2026-05-15T11:04:08Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 397,
"created_at": "2026-05-20T13:11:31Z",
"last_comment_at": "2026-05-20T13:16:51Z",
"last_comment_author": "codecov"
},
{
"number": 398,
"created_at": "2026-07-01T17:44:06Z",
"last_comment_at": "2026-07-01T17:44:07Z",
"last_comment_author": "dependabot"
},
{
"number": 399,
"created_at": "2026-07-16T19:21:43Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-05-15T11:56:29Z",
"ci_last_conclusion": "FAILURE",
"oldest_open_issues": [
{
"number": 5,
"created_at": "2022-06-22T11:40:02Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 25,
"created_at": "2022-08-26T11:22:54Z",
"last_comment_at": "2022-09-12T09:35:33Z",
"last_comment_author": "sophieRAIBAUD"
},
{
"number": 35,
"created_at": "2023-01-12T15:57:56Z",
"last_comment_at": "2025-12-22T13:30:31Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 42,
"created_at": "2023-03-07T07:53:33Z",
"last_comment_at": "2023-05-02T09:50:55Z",
"last_comment_author": "kevinyamauchi"
},
{
"number": 56,
"created_at": "2023-04-27T11:22:13Z",
"last_comment_at": "2023-10-16T20:20:06Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 57,
"created_at": "2023-04-27T11:30:50Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 67,
"created_at": "2023-05-05T15:56:09Z",
"last_comment_at": "2023-08-23T13:27:56Z",
"last_comment_author": "giovp"
},
{
"number": 76,
"created_at": "2023-05-19T13:35:23Z",
"last_comment_at": "2024-07-22T13:44:12Z",
"last_comment_author": "melonora"
},
{
"number": 105,
"created_at": "2023-06-05T10:00:31Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 122,
"created_at": "2023-06-28T12:34:07Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 141,
"created_at": "2023-07-23T08:38:45Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 143,
"created_at": "2023-07-28T16:11:43Z",
"last_comment_at": "2025-02-25T16:43:37Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 165,
"created_at": "2023-10-13T01:39:33Z",
"last_comment_at": "2023-10-15T18:00:50Z",
"last_comment_author": "melonora"
},
{
"number": 166,
"created_at": "2023-10-13T13:20:01Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 189,
"created_at": "2023-12-12T20:16:03Z",
"last_comment_at": "2024-03-13T20:59:36Z",
"last_comment_author": "aeisenbarth"
},
{
"number": 190,
"created_at": "2024-01-06T16:09:14Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 194,
"created_at": "2024-02-08T01:29:49Z",
"last_comment_at": "2024-02-09T00:18:44Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 195,
"created_at": "2024-02-27T18:13:21Z",
"last_comment_at": "2024-02-28T18:37:15Z",
"last_comment_author": "melonora"
},
{
"number": 206,
"created_at": "2024-03-13T16:48:40Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 214,
"created_at": "2024-03-21T15:51:26Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/scverse/napari-spatialdata",
"host": "github.com",
"name": "napari-spatialdata",
"owner": "scverse"
},
"metrics": {
"overall": {
"key": "overall",
"band": "good",
"name": "Overall health",
"note": null,
"notes": [],
"value": 74,
"inputs": {
"security": 62,
"vitality": 68,
"community": 65,
"governance": 77,
"engineering": 94
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "moderate",
"name": "Vitality",
"value": 68,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 52,
"inputs": {
"commits_last_year": 24,
"human_commit_share": 0.77,
"days_since_last_push": 23,
"active_weeks_last_year": 9
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 23 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 23
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "9/52 weeks with commits",
"points": 6.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 9
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "24 commits in the last year",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 24
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"points": 4,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 92,
"inputs": {
"releases_count": 29,
"latest_release_tag": "v0.7.2",
"releases_from_tags": false,
"days_since_latest_release": 23,
"mean_days_between_releases": 71.7
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "29 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 29
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 23 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 23
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~71.7 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 71.7
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 71,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 71 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 71
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 65,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 48,
"inputs": {
"forks": 24,
"stars": 87,
"watchers": 12,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "87 stars",
"points": 31.4,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 87
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "24 forks",
"points": 11.3,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 24
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "12 watchers",
"points": 5.8,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 12
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "excellent",
"name": "Community health",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": true,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 18,
"status": "met",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 13.5,
"status": "met",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "good",
"name": "Sustainability & Governance",
"value": 77,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "good",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 76,
"inputs": {
"bus_factor": 3,
"contributors_sampled": 15,
"top_contributor_share": 0.262
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "3 contributor(s) cover half of all commits",
"points": 36,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 3
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 26% of commits",
"points": 16.6,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 26
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "15 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 15
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"merged_prs": 208,
"open_issues": 68,
"closed_issues": 94,
"issue_closed_ratio": 0.58,
"closed_unmerged_prs": 22
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "58% of issues closed",
"points": 27.1,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 58
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "208/230 decided PRs merged",
"points": 34.6,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 208,
"decided": 230
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 1/23 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 75,
"inputs": {
"followers": 1520,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "scverse",
"public_repos": 86,
"account_age_days": 1698
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "1,520 followers of scverse",
"points": 22.9,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 1520,
"login": "scverse"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "86 public repos, account ~4 yr old",
"points": 22.3,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 86
}
},
{
"code": "account_age_years",
"params": {
"years": 4
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"napari-spatialdata"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 23
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 23 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 23
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "28 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 28
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 94,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "4 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 4
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": "tox.ini",
"points": 16,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "tox.ini"
}
}
],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"points": 16,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"topics": [
"napari",
"napari-plugin",
"spatial-analysis",
"spatial-omics",
"visualization"
],
"has_wiki": true,
"homepage": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "5 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 5
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 62,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 53,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 5.3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"points": 2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 1/23 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "update tool detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"points": 3,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:napari-spatialdata@0.7.2 runtime dependency closure — what installing the published package pulls in — 184 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:napari-spatialdata@0.7.2",
"assessed": 184
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 184,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 184,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 8
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "moderate",
"name": "AI Readiness",
"value": 58,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 35,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.662,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "51 of 77 human commits state their intent (structured subject or explanatory body)",
"points": 35.3,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 51,
"sampled": 77
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "good",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 72,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [
".mypy.ini"
],
"agent_commit_share": 0.01,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0.04
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": "tox.ini",
"points": 11,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "tox.ini"
}
}
],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": ".mypy.ini",
"points": 11,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": ".mypy.ini"
}
}
],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "1 of the last 100 commits agent-authored or agent-credited",
"points": 2,
"status": "partial",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 1,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "4 of the last 100 commits are automated dependency updates",
"points": 8,
"status": "met",
"details": [
{
"code": "dependency_bot_commits",
"params": {
"count": 4,
"sampled": 100
}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "good",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 82,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 52059,
"source_files_sampled": 39,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python with type-check config (.mypy.ini)",
"points": 27,
"status": "partial",
"details": [
{
"code": "typecheck_config_language",
"params": {
"files": ".mypy.ini",
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/39 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 39,
"oversized": 0
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"examples",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "examples, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "examples, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-26T02:23:49.904981Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/scverse/napari-spatialdata.svg",
"full_name": "scverse/napari-spatialdata",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v1.13.0, schema v0.27.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics — PyPI.