Звіт у форматі JSON машиночитний
{
"data": {
"repo": {
"topics": [
"napari",
"napari-plugin",
"spatial-analysis",
"spatial-omics",
"visualization"
],
"is_fork": false,
"size_kb": 53299,
"has_wiki": true,
"homepage": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"languages": {
"Python": 344187
},
"pushed_at": "2026-07-02T20:45:31Z",
"created_at": "2022-04-02T10:27:54Z",
"owner_type": "Organization",
"updated_at": "2026-07-02T07:27:23Z",
"description": "Interactive visualization of spatial omics data",
"is_archived": false,
"is_disabled": false,
"license_spdx": "BSD-3-Clause",
"default_branch": "main",
"license_spdx_raw": "BSD-3-Clause",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "https://scverse.org",
"name": "scverse",
"type": "Organization",
"login": "scverse",
"company": null,
"location": null,
"followers": 1520,
"avatar_url": "https://avatars.githubusercontent.com/u/95305807?v=4",
"created_at": "2021-11-30T17:11:32Z",
"is_verified": null,
"public_repos": 86,
"account_age_days": 1698
},
"license": {
"state": "standard",
"spdx_id": "BSD-3-Clause",
"raw_spdx": "BSD-3-Clause",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.7.2",
"kind": "patch",
"published_at": "2026-07-02T20:45:31Z"
},
{
"tag": "v0.7.1",
"kind": "patch",
"published_at": "2026-05-06T16:08:37Z"
},
{
"tag": "v0.7.0",
"kind": "minor",
"published_at": "2026-01-30T12:54:59Z"
},
{
"tag": "v0.6.0",
"kind": "minor",
"published_at": "2025-11-03T17:50:09Z"
},
{
"tag": "v0.5.7",
"kind": "patch",
"published_at": "2025-08-15T21:45:50Z"
},
{
"tag": "v0.5.6",
"kind": "patch",
"published_at": "2025-04-21T18:48:33Z"
},
{
"tag": "v0.5.5",
"kind": "patch",
"published_at": "2025-01-20T15:12:29Z"
},
{
"tag": "v0.5.4post0",
"kind": "other",
"published_at": "2024-11-26T18:05:44Z"
},
{
"tag": "v0.5.4",
"kind": "patch",
"published_at": "2024-11-26T16:22:10Z"
},
{
"tag": "v0.5.3",
"kind": "patch",
"published_at": "2024-09-25T09:08:16Z"
},
{
"tag": "v0.5.2post1",
"kind": "other",
"published_at": "2024-08-16T13:45:38Z"
},
{
"tag": "v0.5.2post0",
"kind": "other",
"published_at": "2024-08-16T12:43:40Z"
},
{
"tag": "v0.5.2",
"kind": "patch",
"published_at": "2024-08-16T12:25:41Z"
},
{
"tag": "v0.5.1",
"kind": "patch",
"published_at": "2024-08-07T13:09:17Z"
},
{
"tag": "v0.5.0post1",
"kind": "other",
"published_at": "2024-07-05T14:03:54Z"
},
{
"tag": "v0.5.0post0",
"kind": "other",
"published_at": "2024-07-03T16:08:37Z"
},
{
"tag": "v0.5.0",
"kind": "minor",
"published_at": "2024-07-03T10:25:10Z"
},
{
"tag": "v0.4.1",
"kind": "patch",
"published_at": "2024-03-30T17:08:26Z"
},
{
"tag": "v0.4.0",
"kind": "minor",
"published_at": "2024-03-24T04:35:37Z"
},
{
"tag": "v0.3.1",
"kind": "patch",
"published_at": "2023-11-11T18:54:47Z"
},
{
"tag": "v0.3.0",
"kind": "minor",
"published_at": "2023-11-09T21:37:46Z"
},
{
"tag": "v0.2.8",
"kind": "patch",
"published_at": "2023-10-31T05:14:49Z"
},
{
"tag": "v0.2.7",
"kind": "patch",
"published_at": "2023-10-02T15:36:39Z"
},
{
"tag": "v0.2.6",
"kind": "patch",
"published_at": "2023-07-13T15:45:45Z"
},
{
"tag": "v0.2.5",
"kind": "patch",
"published_at": "2023-07-13T15:17:37Z"
},
{
"tag": "v0.2.4",
"kind": "patch",
"published_at": "2023-05-23T16:16:46Z"
},
{
"tag": "v0.2.3",
"kind": "patch",
"published_at": "2023-05-11T11:16:05Z"
},
{
"tag": "v0.2.1",
"kind": "patch",
"published_at": "2023-05-04T11:02:35Z"
},
{
"tag": "v0.2.0",
"kind": "minor",
"published_at": "2023-05-04T10:40:36Z"
}
],
"recent_commits": [
{
"oid": "a1150de77d9c42467ab0f27b4aa94a048765707e",
"body": "Replace `Window._dock_widgets` with the public `dock_widgets` property\n(removing now-redundant `.widget()` calls since the public API returns\nthe inner widget directly). Remove dead-code assignments to\n`DataModel._region_key` and `DataModel._instance_key`, whose backing\nfields are never read — the public properties derive both values from\n`get_table_keys(self.adata)` — and drop the unused dataclass fields.\n\nCo-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>",
"is_bot": false,
"headline": "Fix deprecation GUI warnings for private napari attribute access (#396)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-05-15T11:56:29Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "3dfb2c00394826c680bc088a5744d8255e5868b0",
"body": "* fix the Issue #31\n\n* fix Issue #31\n\n* fix Issue #31\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* address review feedback PR#393\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": false,
"headline": "Support 3D visualization for points and 2.5D shapes (#393)",
"author_name": "Ahmet Sarıgün",
"author_login": "asarigun",
"committed_at": "2026-05-15T08:51:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88edca3fb841316f3fd4f901db5eaf9b83ed075f",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/pre-commit/mirrors-mypy: v1.19.1 → v1.20.2](https://github.com/pre-commit/mirrors-mypy/compare/v1.19.1...v1.20.2)\n- [github.com/psf/black-pre-commit-mirror: 25.12.0 → 26.3.1](https://github.com/psf/black-pre-commit-mirror/compare/25.12.\n[…]\n see https://pre-commit.ci\n\n* fix pre-commit\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#384)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-05-12T16:06:40Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "3a8b87fb616cd76b10056ee4dbda9f55c8441652",
"body": "…tes (#394)\n\nBumps the actions group with 4 updates in the / directory: [actions/upload-artifact](https://github.com/actions/upload-artifact), [actions/download-artifact](https://github.com/actions/download-artifact), [actions/github-script](https://github.com/actions/github-script) and [codecov/cod\n[…]\npe: version-update:semver-major\n dependency-group: actions\n...\n\nSigned-off-by: dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group across 1 directory with 4 upda…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2026-05-05T14:34:42Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a5b423fd9db691caa46e95f9b4c410d5d1b77a28",
"body": "* patch headless tests due to vispy\n\n* improve docstring\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* fix precommit; fix spatialdata pre-release dep\n\n---------\n\nCo-authored-by: Ubuntu <ubuntu@machine.denbi.prod>\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Patch headless tests due to `QT_QPA_PLATFORM=offscreen` edgecase (#390)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-03-23T14:52:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "07ff794ac8470cbf8d4a50d6320c984363460259",
"body": "* fix docs links\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* cleanup import\n\n* attempt fix ci\n\n* add lowerbound spatialdata\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "Fix docs links (#389)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-02-24T15:37:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6747bf035d791a6bc0eee9b49f48eb9fc1d31896",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' of https://github.com/scverse/napari-spatialdata",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-28T12:25:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c5d9fec4fdd2f1201319c7a442b859bb0ce1fecc",
"body": "* fix scanpy set_default_colors_for_categorical_obs\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* fix\n\n* fix\n\n* fix\n\n* fix tests\n\n* fix tests macos/linux\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Ubuntu <ubuntu@machine.denbi.prod>",
"is_bot": false,
"headline": "Fix scanpy set_default_colors_for_categorical_obs (#385)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-27T17:51:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9a49914032dfaa07dfc5369be6a94637633602eb",
"body": null,
"is_bot": false,
"headline": "fix scanpy set_default_colors_for_categorical_obs",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-27T15:41:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2e64014856f259b83c77e64db7cc4d278d2f5189",
"body": "* better 3D and 2.5D support for raster and vector data\n\n* fix mypy; workaround qt test (command double registration)\n\n* fix deprecated API\n\n* remove dask pin\n\n* cleanup\n\n* add tests for 3D points, 2.5D shapes; improve contribution guide\n\n* bump min spatialdata",
"is_bot": false,
"headline": "Better 3D and 2.5D support for raster and vector data (#366)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T16:31:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5daf882f8322923c8498713ba8dc82b132f2edb7",
"body": "* fix tests cleanup\n\n* remove test_aaa.py",
"is_bot": false,
"headline": "fix tests cleanup (#357)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T14:17:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "75268eb105ecc73f8dcb3f33f81eed16040c41c7",
"body": null,
"is_bot": false,
"headline": "add ui for changing point size in scatterplot (#383)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-06T13:54:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a67669f8d55977e1f365c65d70f1126833e63adc",
"body": "…tes (#380)\n\nBumps the actions group with 5 updates in the / directory:\n\n| Package | From | To |\n| --- | --- | --- |\n| [actions/checkout](https://github.com/actions/checkout) | `4` | `6` |\n| [actions/setup-python](https://github.com/actions/setup-python) | `5` | `6` |\n| [actions/upload-artifact](htt\n[…]\n dependabot[bot] <support@github.com>\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group across 1 directory with 5 upda…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2026-01-06T13:53:47Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "39bbb38052ff59db4fa588228793f94c0bc3b034",
"body": "updates:\n- [github.com/pre-commit/mirrors-mypy: v1.17.1 → v1.19.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.17.1...v1.19.1)\n- https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror\n- [github.com/psf/black-pre-commit-mirror: 25.1.0 → 25.12.0](https://github.com/psf\n[…]\nade/compare/v3.20.0...v3.21.2)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#370)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2026-01-06T13:53:03Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "b39fc55104adde4b8dd3bdc61fa9795d65f80c62",
"body": "* bump mins: python, spatialdata, dask\n\n* fix min dask\n\n* bump napari-matplotlib, bump python mins\n\n* fix test scatterplot hover\n\n* fix seeds in tests\n\n* attempt fix readthedocs install\n\n* attempt fix readsthedocs\n\n* pre-release install in benchmark job\n\n* bump anndata and spatialdata mins\n\n* fix\n\n* attempt fix benchmark job\n\n* remove benchmarks section from test.yaml",
"is_bot": false,
"headline": "bump mins: python, spatialdata, dask (#377)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-03T14:15:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "232ac934755c402f5bcc555880dd356f1ab876af",
"body": null,
"is_bot": false,
"headline": "Update spatialdata pre version in setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2026-01-01T23:06:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c95e3e2711843b3884d3f4d63e754e2c742ff4fd",
"body": null,
"is_bot": false,
"headline": "Merge branch 'main' of https://github.com/scverse/napari-spatialdata",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-09-13T15:02:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03b58f35b5ead24f07e92c7562a1e0b5a91475c5",
"body": null,
"is_bot": false,
"headline": "fix docs typo",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-09-13T15:01:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1391e9efe7c2c6626132382ff21b870262aaa12f",
"body": "* simplify conditional\n\n* small changes for zarrv3 spatialdata\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": false,
"headline": "small updates for zarrv3 branch (#374)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-09-13T12:29:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8db31af9c9386707ab7b5c06d48c7963a71cafbd",
"body": null,
"is_bot": false,
"headline": "Update release.yml",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-15T21:48:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fde2382a8d8bf6b05b7042a082ce24868a88c8be",
"body": null,
"is_bot": false,
"headline": "fix skip tests if napari offscreen",
"author_name": "Luca Marconato",
"author_login": null,
"committed_at": "2025-08-15T18:51:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "77c08bf5a487a86cc9a6fb82afc5390b8519e4d3",
"body": null,
"is_bot": false,
"headline": "attempt napari tests with offscreen",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-15T18:47:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0cbb9f3c66ddd1e0a4d3e43dd63afd6d31bbfbc9",
"body": null,
"is_bot": false,
"headline": "better comments",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2025-08-14T15:53:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "29c1c1411bb77b7d44b4a11fa7091da7464cc5f3",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/pre-commit/mirrors-mypy: v1.15.0 → v1.17.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.15.0...v1.17.1)\n- [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](https://github.com/pre-commit/pre-commit-hooks/compare/v5.0.0.\n[…]\nmmand double registration)\n\n* fix pre-commit\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate + fix qt tests (#360)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-08-14T15:50:44Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "0429cf1ab2dc6ae647bff231f632f3dbe92d748e",
"body": "* simplify conditional\n\n* bump version, change to ctrl+l\n\n* add bermuda\n\n* add blog post\n\n* correct doc reference\n\n* use export_figure\n\n* remove argument\n\n* match type hint\n\n* verify path\n\n* update artefact path\n\n* revert viewer theme change\n\n* check readthedocs with pydanticv2\n\n* constrain dask\n\n* constrain dask\n\n* attempt fix mac\n\n* add warning\n\n* change caplog index\n\n* change access of deprecated _dock_widgets access",
"is_bot": false,
"headline": "Update napari to 0.6.2 and add bermuda (#368)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-07-04T09:22:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aea2eb559c536aae64ba1a57dc71d26c2c66db28",
"body": null,
"is_bot": false,
"headline": "Update README.md: add pypi and anaconda badges (#358)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-04-23T02:08:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fbab2563fe21d6aee6d050a940eb16a5346e8fbc",
"body": null,
"is_bot": false,
"headline": "fix docs urls (#356)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-04-21T18:36:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "77624cc154658385f91210d3adbf3c05508a16c9",
"body": "updates:\n- [github.com/astral-sh/ruff-pre-commit: v0.11.5 → v0.11.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.11.5...v0.11.6)\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#355)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-21T18:27:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4b9896afc991ae23dffecf78004dac06e3145ac8",
"body": "* simplify conditional\n\n* don't fetch specific branch\n\n* attempt fix\n\n* another attempt\n\n* reattempt fix benchmark on main\n\n* benchmark latest release commit directly\n\n* check whether on main\n\n* only latest commit",
"is_bot": false,
"headline": "Benchmark fix (#354)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-04-18T15:12:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dfc1a889ef7e17887180fa7ddc7ad83a821eeaf8",
"body": "* simplify conditional\n\n* don't fetch specific branch\n\n* attempt fix\n\n* another attempt",
"is_bot": false,
"headline": "Benchmark fix (#353)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-04-18T13:51:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "62751ce1feadb0048dddbb425e9cbf6a2ba297b9",
"body": "* [pre-commit.ci] pre-commit autoupdate\n\nupdates:\n- [github.com/astral-sh/ruff-pre-commit: v0.9.6 → v0.11.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.6...v0.11.5)\n\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\n\nfor more information, see https://pre-commit.ci\n\n* add viewer c\n[…]\nse viewer\n\n* ensure fetching main\n\n---------\n\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\nCo-authored-by: Wouter-Michiel Vierdag <michiel.vierdag@embl.de>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#349)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-04-18T10:31:55Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "949d630665a49b542a1e0c0a1f43864356f369e0",
"body": null,
"is_bot": false,
"headline": "Update LICENSE",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:07:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e10e103c4df757f570998c5f47661f5d0eefe55a",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-28T15:06:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc7bf6186df488726d63efd18d6015f0963fa521",
"body": null,
"is_bot": false,
"headline": "Fix exception due to adata being none (#345)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-02-17T23:18:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "602db3c97fe666cb688b9927393110f4d5e5c479",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.14.1 → v1.15.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.14.1...v1.15.0)\r\n- [github.com/psf/black: 24.10.0 → 25.1.0](https://github.com/psf/black/compare/24.10.0...25.1.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.9.2 → v0.9.6](http\n[…]\ntral-sh/ruff-pre-commit/compare/v0.9.2...v0.9.6)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#343)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-02-17T12:35:04Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "0b3044a79da596cf386d75da9e30542fc98642a4",
"body": "* simplify conditional\r\n\r\n* temporarily constrain napari version",
"is_bot": false,
"headline": "Temporarily constrain napari version (#347)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2025-02-17T09:01:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "36fe3b96e829f45b39012238a5d1f4d8e1087eae",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.9.1 → v0.9.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.9.1...v0.9.2)\r\n\r\n* [pre-commit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#342)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-01-21T01:39:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6e643fef434a413528f324ab7f97b96fa8ecc192",
"body": null,
"is_bot": false,
"headline": "Update release.yml with labels from \"keepachangelog\"",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-20T17:39:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ed4c59ac54163adc14e950243a5b4e783ce9212",
"body": null,
"is_bot": false,
"headline": "Update release.yml",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-20T15:06:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a7b5faa7252fab7ced9b71e40cb65e3dfb3d6c29",
"body": null,
"is_bot": false,
"headline": "Improved release process and its documentation (#338)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2025-01-13T19:57:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c4f0620a9492566d5e877c5fb4362770995aa342",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.14.0 → v1.14.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.14.0...v1.14.1)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.8.4 → v0.9.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.4...v0.9.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#340)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2025-01-13T19:57:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "271d4bd39702105c879c32702880c7256fbaf359",
"body": null,
"is_bot": false,
"headline": "fix plot categorical with colors, on labels (#337)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-26T22:19:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4666968eec014097f764e81337b82212157175c3",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.13.0 → v1.14.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.13.0...v1.14.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.8.3 → v0.8.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.3...v0.8.4)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#336)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-12-26T16:34:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0c6abf247b354c2e1f4a601e3d3375f7ad1b3be8",
"body": "* Sort elements and coordinate systems in widgets\r\n\r\n* Sort table names\r\n\r\n* fix test, update changelog\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Sort elements in widgets (#285)",
"author_name": "aeisenbarth",
"author_login": "aeisenbarth",
"committed_at": "2024-12-17T19:04:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e19e94c87dfe99519c7c90b43850616f19410e97",
"body": "* re-enable showing circles as points\r\n\r\n* fix pre-commit local ignore\r\n\r\n* fixes circles as points",
"is_bot": false,
"headline": "Small fix/circles as points (#334)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-17T18:43:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2bc64cb0fa9009a2cf496ce0d842dafeb3796fed",
"body": "* re-enable showing circles as points\r\n\r\n* fix pre-commit local ignore",
"is_bot": false,
"headline": "re-enable showing circles as points (#309)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-12-17T18:31:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "801c50e9238345e4011167c3b6c9e3827dd13689",
"body": "* move loading data to separate thread to prevent freezing viewer\r\n\r\n* workaround for macos\r\n\r\n* do not fail test fast\r\n\r\n* disable thread loading in test\r\n\r\n* add proper test for threading messaging\r\n\r\n* improve macos guard\r\n\r\n* improve guard because of new napari release fixing blas problem\r\n\r\n* fix typo in napari name\r\n\r\n* fix pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Move loading data to separate thread to prevent freezing viewer (#283)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-12-17T16:44:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "802b8129c9f2c27bca2ec17875c398a9592d308b",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.2 → v1.13.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.2...v1.13.0)\r\n- [github.com/psf/black: 24.8.0 → 24.10.0](https://github.com/psf/black/compare/24.8.0...24.10.0)\r\n- [github.com/pre-c\n[…]\n\r\n\r\n* fix precommit\r\n\r\n* fix pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#323)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-12-17T16:23:56Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "776c26e99f78da9d5ff8f1e79624cc7ff4db4ec3",
"body": "…s group (#332)\n\nBumps the actions group with 1 update: [codecov/codecov-action](https://github.com/codecov/codecov-action).\r\n\r\n\r\nUpdates `codecov/codecov-action` from 4 to 5\r\n- [Release notes](https://github.com/codecov/codecov-action/releases)\r\n- [Changelog](https://github.com/codecov/codecov-acti\n[…]\nersion-update:semver-major\r\n dependency-group: actions\r\n...\r\n\r\nSigned-off-by: dependabot[bot] <support@github.com>\r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "ci(dependabot): bump codecov/codecov-action from 4 to 5 in the action…",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2024-12-17T15:47:27Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a5191c7d81d994467b4f2ad93a13a345925e6008",
"body": "* simplify conditional\r\n\r\n* basic pyqt graph\r\n\r\n* mouse actions test\r\n\r\n* editable rois added\r\n\r\n* working gradient widget\r\n\r\n* discret data works with lut widget\r\n\r\n* discrete widget prototype\r\n\r\n* discrete color widget works\r\n\r\n* Rectangular selection implemented\r\n\r\n* complex shapes columns saved \n[…]\nauthored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "pyqt scatter widget (#270)",
"author_name": "Kasia Kedziora",
"author_login": "fjorka",
"committed_at": "2024-12-17T15:38:20Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "b3ae66c325d151249243eb9f6906032bd38fc9f6",
"body": null,
"is_bot": false,
"headline": "Update setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-11-26T17:18:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94a73ab7b66fb029796fcc7e2a5c8e39cd0dae63",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-11-26T16:21:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "914e540d917a359f5238543b51c71db410c3ecfa",
"body": "* simplify conditional\r\n\r\n* add utility functions for datatree\r\n\r\n* update python version\r\n\r\n* migrate pre-commit config\r\n\r\n* adjust to multiscale_spatial_image\r\n\r\n* fix pre-release bencharmark CI; attempt0\r\n\r\n* fix pre-commit\r\n\r\n* prettier\r\n\r\n---------\r\n\r\nCo-authored-by: LucaMarconato <2664412+LucaMarconato@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Xarray datatree support (#329)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-11-26T15:15:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a38e2866c9195866fecf1eca0f911d52587b163a",
"body": "* Add functions to interactive\r\n\r\nIn this commit two functions are added to the interactive class.\r\nget_layer grabs the layer name and returns the layer if it matches the user input.\r\nadd_text_to_polygons adds annotations to the chosen polygons/shapes layer\r\n\r\n* [pre-commit.ci] auto fixes from pre-c\n[…]\nauthored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": false,
"headline": "Add functions to interactive (#315)",
"author_name": "Minh Trinh",
"author_login": "minhtien-trinh",
"committed_at": "2024-10-09T13:39:34Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "7d49c2388850b1aff7d2bac2ab1ef3f22c45b88b",
"body": "Co-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Add teardown steep for example benchamark (#311)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-10-03T16:07:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9b8bb4a9465c5b0ce8b1d4d69c269cd8d3f9ae37",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.1 → v1.11.2](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.1...v1.11.2)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.7 → v0.6.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.7.\n[…]\nit.ci] auto fixes from pre-commit.com hooks\r\n\r\nfor more information, see https://pre-commit.ci\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#300)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-10-02T18:31:32Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "f84b79bcbc2616ecf1736720f4ed029724b3d10c",
"body": "…(#320)",
"is_bot": false,
"headline": "Fix instance id shift bug; fix obsm viz; fix background color labels …",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-10-01T11:18:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8df1eb632b4f95042ef9b31d07a4546a97e17680",
"body": "* fix radii of transformed circles\r\n\r\n* fix pre-commit\r\n\r\n* fix mypy\r\n\r\n* remove last NDArray, replaced with ArrayLike\r\n\r\n* removed another NDArrayA",
"is_bot": false,
"headline": "fix radii of transformed circles (#318)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-30T12:27:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "803c35e632eb17732c17de90d02794f5c2e6065b",
"body": null,
"is_bot": false,
"headline": "Update CHANGELOG.md",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-25T09:04:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3dc4e5b354288de248a59bb6801659ad4a5d4061",
"body": "* fix bug adata in model not being reset\r\n\r\n* changelog",
"is_bot": false,
"headline": "Fix bug adata in model not being reset (#317)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-25T08:39:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4385a20a1439358d016d76a9a38c210066f0826e",
"body": null,
"is_bot": false,
"headline": "extra fix annotations",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-11T12:01:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c3cd50adecd6d71911c0439c0bac02463996797c",
"body": null,
"is_bot": false,
"headline": "hotfix annotations",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-09-11T11:49:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "885b5fae92b6c177f298b60be53dcab667c0c91d",
"body": "* test to reproduce #302\r\n\r\n* fix single scale images\r\n\r\n---------\r\n\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": false,
"headline": "test to reproduce #302 (#303)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-26T20:22:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "14a93d7a391107c42b9a85ac0fec4fbc85a6e532",
"body": "…ory (#307)",
"is_bot": false,
"headline": "Fetch information about latest release informtion from proper reposit…",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-26T15:03:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "33fd676ca65f674e6670294d7adedf0af9d81300",
"body": "* bug categorical annotatoins points\r\n\r\n* added test for continuous column",
"is_bot": false,
"headline": "bug categorical annotatoins points (#304)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-23T11:16:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "060d5d0e145cc4819ba20427436e5a6ab43a03a4",
"body": "* fix #282 (error in channel selection due to #153)\r\n\r\n* cleanup commented code\r\n\r\n* fix test slider python 3.11",
"is_bot": false,
"headline": "fix #282 (error in channel selection due to #276) (#301)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-19T18:57:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "65d27a7e921960851f4bb9646076dcb401c5862e",
"body": "* minimum 3.9.2, testing against 3.11\r\n\r\n* fix pre-commit",
"is_bot": false,
"headline": "Minimum 3.9.2, testing against 3.11 (#299)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-19T12:50:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "de09eb4c3c7a62b72f7bab2e45c0c8dc763fdaab",
"body": "* ci(dependabot): bump the actions group with 4 updates\r\n\r\nBumps the actions group with 4 updates: [actions/checkout](https://github.com/actions/checkout), [actions/setup-python](https://github.com/actions/setup-python), [codecov/codecov-action](https://github.com/codecov/codecov-action) and [action\n[…]\n-\r\n\r\nSigned-off-by: dependabot[bot] <support@github.com>\r\nCo-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>\r\nCo-authored-by: Grzegorz Bokota <bokota+github@gmail.com>",
"is_bot": true,
"headline": "ci(dependabot): bump the actions group with 4 updates (#292)",
"author_name": "dependabot[bot]",
"author_login": "dependabot[bot]",
"committed_at": "2024-08-19T09:50:38Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "a4f762638503d59a10b34885f02b282c2b55c1a9",
"body": null,
"is_bot": false,
"headline": "Fix paths in benchmarks (#297)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-19T09:49:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "13e69dfc664f7c80b354260641dadf11460104bd",
"body": "* add basic structure for asv\r\n\r\n* fix checking last release\r\n\r\n* attempt fix libmambapy related ci failure\r\n\r\n* reverted mamba attempted fix\r\n\r\n* update readme and add PR example\r\n\r\n---------\r\n\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": false,
"headline": "Add basic structure for asv performance measurement (#289)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T15:58:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69105e01cd30f07fce8e94d03ca13ee88f6566af",
"body": null,
"is_bot": false,
"headline": "Fix deploy by using local directory (#295)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T13:44:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7c4d7de7cd46bd18ccf784c20786c0bda23143da",
"body": null,
"is_bot": false,
"headline": "Fix deploy by read dist path form output of previous steep (#294)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T12:42:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "069c0d47ea2c4239238166b112fa63ff9c7bb188",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-16T12:24:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f64dc327f0a2f969f6381df960def22d8799caf1",
"body": "* modernize release workflow\r\n\r\n* fix file path",
"is_bot": false,
"headline": "Modernize release workflow use most recent tool (#291)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-16T12:15:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b50df555d9c0e1335c99afc27bc7b63bf0324934",
"body": null,
"is_bot": false,
"headline": "miant: Add depenabot configuration (#290)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-08-15T11:51:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "682c26e8c01f7ca85c0dcc22dbb47b63a14223bc",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.6 → v0.5.7](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.6...v0.5.7)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#288)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-13T11:14:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00901e0f76fb01f1038182b8ea850629b23b9ca5",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-08-07T13:08:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0895642183a87ea7e86cc23800123b5c198b0451",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.11.0 → v1.11.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.11.0...v1.11.1)\r\n- [github.com/psf/black: 24.4.2 → 24.8.0](https://github.com/psf/black/compare/24.4.2...24.8.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.5 → v0.5.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.5...v0.5.6)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#281)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-08-06T21:55:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9f9c3cfe17280924b29dc5052071153a3a486f5",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.4 → v0.5.5](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.4...v0.5.5)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#280)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-31T16:23:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "221aa524d5653de3356df6b629eae54e858d635c",
"body": null,
"is_bot": false,
"headline": "docs: Fix installation instruction (#279)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-31T16:22:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "66b655567799e908b99c7b916036d56534dfb29d",
"body": null,
"is_bot": false,
"headline": "fix: use `current_point` instead of `displayed` (#278)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-24T07:17:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c1383034478ed5e0a7fc94cb6f682aa928c377d",
"body": "Co-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": false,
"headline": "fix return type _adjust_channels_order() (#269)",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-22T21:55:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b8bdb6ee0effdafb48bcb017d43d34d0584fc8e1",
"body": "updates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.10.1 → v1.11.0](https://github.com/pre-commit/mirrors-mypy/compare/v1.10.1...v1.11.0)\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.2 → v0.5.4](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.2...v0.5.4)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#277)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-22T18:51:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a57eebbf72b430c997dc7b96aab514308a7c3b2",
"body": "* fix: fix adjusting contrast limits for rgb data\r\n\r\n* fix pre-commit\r\n\r\n* Apply suggestions from code review\r\n\r\n* Update src/napari_spatialdata/_viewer.py\r\n\r\n---------\r\n\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>",
"is_bot": false,
"headline": "fix: fix adjusting contrast limits for rgb data (#276)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-22T14:00:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2f4f425a828c146fc1d33c5adb2dff9a1fbcc51e",
"body": "* Change RGB detection to be based on channel names, not number of channels\r\n\r\n* Ensure c-dim is ordered as r, g, b, a\r\n\r\n* Don't transpose c when c_coords are empty\r\n\r\n* adjust test for rgb\r\n\r\n* allow artifacts in git workflow\r\n\r\n* remove old plots\r\n\r\n* add new plots\r\n\r\n* fix tests\r\n\r\n---------\r\n\r\nCo-authored-by: Wouter-Michiel Vierdag <w-mv@hotmail.com>\r\nCo-authored-by: Wouter-Michiel Vierdag <michiel.vierdag@embl.de>",
"is_bot": false,
"headline": "Change RGB detection to be based on channel names (#153)",
"author_name": "aeisenbarth",
"author_login": "aeisenbarth",
"committed_at": "2024-07-22T11:20:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "39768254a59d26e870b7725aff01de0e9b8e7455",
"body": null,
"is_bot": false,
"headline": "Silence warning in data reader (#275)",
"author_name": "Grzegorz Bokota",
"author_login": "Czaki",
"committed_at": "2024-07-22T08:55:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ede93a854680bc93153c23e37561b0b2b4b85d6a",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.1 → v0.5.2](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.1...v0.5.2)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#274)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-16T14:33:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d6e55f93a1cc783e5ea61b62e93ff3f682642241",
"body": null,
"is_bot": false,
"headline": "added xarray-datatree dependency",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-12T18:18:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "27da97279e557b9c8f72a0615ad566ae2f1c3f55",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.5.0 → v0.5.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.5.0...v0.5.1)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#267)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-09T22:18:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "01e12da226223d49133375643901e7dbad96f868",
"body": null,
"is_bot": false,
"headline": "fix min spatialdata version",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-05T13:59:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2c0aa988ad1ffbf94b78f05c47c33448588d933e",
"body": null,
"is_bot": false,
"headline": "fix url (#266)",
"author_name": "Giovanni Palla",
"author_login": "giovp",
"committed_at": "2024-07-03T13:45:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4f1242294758764bef0aabad315e07d899d5c48e",
"body": "* [pre-commit.ci] pre-commit autoupdate\r\n\r\nupdates:\r\n- [github.com/pre-commit/mirrors-mypy: v1.10.0 → v1.10.1](https://github.com/pre-commit/mirrors-mypy/compare/v1.10.0...v1.10.1)\r\n- [github.com/asottile/blacken-docs: 1.16.0 → 1.18.0](https://github.com/asottile/blacken-docs/compare/1.16.0...1.18.0\n[…]\nre/v0.4.8...v0.5.0)\r\n\r\n* fir pre-commit\r\n\r\n---------\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>\r\nCo-authored-by: Luca Marconato <m.lucalmer@gmail.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#256)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-07-03T10:46:41Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "7fe90dd6b95d9070d4ad7f0b4e2a94dbab8b6acc",
"body": null,
"is_bot": false,
"headline": "changelog",
"author_name": "Luca Marconato",
"author_login": "LucaMarconato",
"committed_at": "2024-07-03T10:24:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e0085a8fd1bc57a860292350a25d5e8f2276f90e",
"body": "* simplify conditional\r\n\r\n* avoid duplicates, correct overwrite message\r\n\r\n* fix issues\r\n\r\n* only delete table if shapes element name is still the same\r\n\r\n* delete old shapes if table_name stays the same\r\n\r\n* export not backed\r\n\r\n* change to warning\r\n\r\n* disallow editing first class",
"is_bot": false,
"headline": "Fix annotation (#261)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-27T14:33:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c667d898b3f4ee9a823aa850b1578d158b3714ab",
"body": "* simplify conditional\r\n\r\n* fix contrast limits",
"is_bot": false,
"headline": "fix contrast limits (#265)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-27T13:15:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d45606bf9d2bc13cb270119d3740c915c93b402",
"body": null,
"is_bot": false,
"headline": "simplify conditional (#264)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-26T09:32:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e2d02dd2bc8e9f27cefca59aeda4b8ac0da947f6",
"body": null,
"is_bot": false,
"headline": "Update setup.cfg",
"author_name": "LucaMarconato",
"author_login": "LucaMarconato",
"committed_at": "2024-06-24T14:57:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4bc96052014cbdeb932b6fc0fd7d9245ec06e6da",
"body": "* simplify conditional\r\n\r\n* use get_element_annotators",
"is_bot": false,
"headline": "Get element annotators (#259)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-24T14:00:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2d83d07cfc8b800dc686c051341ed135b2d77b5d",
"body": "* simplify conditional\r\n\r\n* initial adoptation of DataArray, DataTree\r\n\r\n* fix test",
"is_bot": false,
"headline": "Support DataArray, DataTree (#257)",
"author_name": "Wouter-Michiel Vierdag",
"author_login": "melonora",
"committed_at": "2024-06-24T13:53:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d66297a1feec729ea7c2fe8750485b9c8fe26261",
"body": "updates:\r\n- [github.com/astral-sh/ruff-pre-commit: v0.4.7 → v0.4.8](https://github.com/astral-sh/ruff-pre-commit/compare/v0.4.7...v0.4.8)\r\n\r\nCo-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",
"is_bot": true,
"headline": "[pre-commit.ci] pre-commit autoupdate (#251)",
"author_name": "pre-commit-ci[bot]",
"author_login": "pre-commit-ci[bot]",
"committed_at": "2024-06-15T23:07:32Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 29,
"commits_last_year": 24,
"latest_release_at": "2026-07-02T20:45:31Z",
"latest_release_tag": "v0.7.2",
"releases_from_tags": false,
"days_since_last_push": 23,
"active_weeks_last_year": 9,
"days_since_latest_release": 23,
"mean_days_between_releases": 71.7
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": true,
"health_percentage": 62,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"ecosystem": {
"packages": [
{
"name": "napari-spatialdata",
"exists": true,
"license": "BSD-3-Clause",
"keywords": [
"Development Status :: 2 - Pre-Alpha",
"Framework :: napari",
"Intended Audience :: Developers",
"License :: OSI Approved :: BSD License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: 3.13",
"Topic :: Software Development :: Testing"
],
"ecosystem": "pypi",
"matches_repo": true,
"registry_url": "https://pypi.org/project/napari-spatialdata/",
"is_deprecated": false,
"latest_version": "0.7.2",
"repository_url": "https://github.com/scverse/napari-spatialdata",
"versions_count": 28,
"total_downloads": null,
"dependents_count": null,
"deprecation_note": null,
"maintainers_count": null,
"monthly_downloads": null,
"first_published_at": "2022-07-06T14:57:06.453889Z",
"latest_published_at": "2026-07-02T20:46:11.164742Z",
"latest_version_yanked": null,
"days_since_latest_publish": 23
}
]
},
"popularity": {
"forks": 24,
"stars": 87,
"watchers": 12,
"fork_history": {
"days": [
{
"date": "2022-07-13",
"count": 1
},
{
"date": "2022-07-28",
"count": 1
},
{
"date": "2023-03-08",
"count": 1
},
{
"date": "2023-04-26",
"count": 1
},
{
"date": "2023-04-27",
"count": 1
},
{
"date": "2023-08-24",
"count": 1
},
{
"date": "2023-10-23",
"count": 1
},
{
"date": "2023-11-29",
"count": 1
},
{
"date": "2024-05-17",
"count": 1
},
{
"date": "2024-05-30",
"count": 1
},
{
"date": "2024-06-15",
"count": 1
},
{
"date": "2024-07-19",
"count": 1
},
{
"date": "2024-09-09",
"count": 1
},
{
"date": "2024-10-03",
"count": 1
},
{
"date": "2024-10-09",
"count": 1
},
{
"date": "2025-04-22",
"count": 1
},
{
"date": "2025-06-23",
"count": 1
},
{
"date": "2025-08-06",
"count": 1
},
{
"date": "2025-09-19",
"count": 1
},
{
"date": "2025-09-22",
"count": 1
},
{
"date": "2025-11-28",
"count": 1
},
{
"date": "2025-12-11",
"count": 1
},
{
"date": "2026-04-14",
"count": 1
},
{
"date": "2026-05-15",
"count": 1
}
],
"complete": true,
"collected": 24,
"total_forks": 24
},
"star_history": null,
"open_issues_and_prs": 72
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [
"examples",
"notebooks"
],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [
"docs/Makefile"
],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [
".mypy.ini"
],
"toolchain_manifests": [],
"largest_source_bytes": 52059,
"source_files_sampled": 39,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml",
"setup.cfg"
],
"advisories": {
"error": null,
"scope": "published_package",
"source": "osv",
"findings": [],
"collected": true,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 184,
"malicious_count": 0,
"assessed_package": "pypi:napari-spatialdata@0.7.2",
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [
{
"name": "anndata",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.12.0"
},
{
"name": "click",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "cycler",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "dask",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=2025.2.0"
},
{
"name": "geopandas",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "loguru",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "matplotlib",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "napari",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.6.2"
},
{
"name": "napari-matplotlib",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=3.0.2"
},
{
"name": "numba",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "numpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "packaging",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pandas",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pillow",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "pyqtgraph",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "qtpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scanpy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scipy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "shapely",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "scikit-learn",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "spatialdata",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=0.7.2"
},
{
"name": "superqt",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "typing_extensions",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": ">=4.8.0"
},
{
"name": "vispy",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "xarray",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
},
{
"name": "xarray-datatree",
"manifest": "setup.cfg",
"ecosystem": "pypi",
"version_constraint": null
}
],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [],
"collected": true,
"truncated": false,
"total_count": 0,
"direct_count": 0,
"indirect_count": 0
}
},
"maintainership": {
"issues": {
"open_prs": 4,
"merged_prs": 208,
"open_issues": 68,
"closed_ratio": 0.58,
"closed_issues": 94,
"closed_unmerged_prs": 22
},
"bus_factor": 3,
"bot_contributors": 2,
"top_contributors": [
{
"type": "User",
"login": "LucaMarconato",
"commits": 80,
"avatar_url": "https://avatars.githubusercontent.com/u/2664412?v=4"
},
{
"type": "User",
"login": "giovp",
"commits": 72,
"avatar_url": "https://avatars.githubusercontent.com/u/25887487?v=4"
},
{
"type": "User",
"login": "melonora",
"commits": 43,
"avatar_url": "https://avatars.githubusercontent.com/u/22346363?v=4"
},
{
"type": "User",
"login": "totmar101",
"commits": 41,
"avatar_url": "https://avatars.githubusercontent.com/u/107241132?v=4"
},
{
"type": "User",
"login": "rahulbshrestha",
"commits": 36,
"avatar_url": "https://avatars.githubusercontent.com/u/22676591?v=4"
},
{
"type": "User",
"login": "Czaki",
"commits": 13,
"avatar_url": "https://avatars.githubusercontent.com/u/3826210?v=4"
},
{
"type": "User",
"login": "aeisenbarth",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/54448967?v=4"
},
{
"type": "User",
"login": "kevinyamauchi",
"commits": 5,
"avatar_url": "https://avatars.githubusercontent.com/u/1120672?v=4"
},
{
"type": "User",
"login": "berombau",
"commits": 4,
"avatar_url": "https://avatars.githubusercontent.com/u/8041507?v=4"
},
{
"type": "User",
"login": "asarigun",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/47702994?v=4"
}
],
"contributors_sampled": 15,
"top_contributor_share": 0.262
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"benchmarks.yml",
"benchmarks_report.yml",
"release.yml",
"test.yml"
],
"has_docs_dir": true,
"linter_configs": [
"tox.ini"
],
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": null,
"reason": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 8,
"reason": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 1/23 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 12 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 10,
"reason": "update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 4,
"reason": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "a1150de77d9c42467ab0f27b4aa94a048765707e",
"ran_at": "2026-07-26T02:23:29Z",
"aggregate_score": 5.3,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": true
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-02T20:45:47Z",
"oldest_open_prs": [
{
"number": 395,
"created_at": "2026-05-15T11:04:08Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 397,
"created_at": "2026-05-20T13:11:31Z",
"last_comment_at": "2026-05-20T13:16:51Z",
"last_comment_author": "codecov"
},
{
"number": 398,
"created_at": "2026-07-01T17:44:06Z",
"last_comment_at": "2026-07-01T17:44:07Z",
"last_comment_author": "dependabot"
},
{
"number": 399,
"created_at": "2026-07-16T19:21:43Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": "2026-05-15T11:56:29Z",
"ci_last_conclusion": "FAILURE",
"oldest_open_issues": [
{
"number": 5,
"created_at": "2022-06-22T11:40:02Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 25,
"created_at": "2022-08-26T11:22:54Z",
"last_comment_at": "2022-09-12T09:35:33Z",
"last_comment_author": "sophieRAIBAUD"
},
{
"number": 35,
"created_at": "2023-01-12T15:57:56Z",
"last_comment_at": "2025-12-22T13:30:31Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 42,
"created_at": "2023-03-07T07:53:33Z",
"last_comment_at": "2023-05-02T09:50:55Z",
"last_comment_author": "kevinyamauchi"
},
{
"number": 56,
"created_at": "2023-04-27T11:22:13Z",
"last_comment_at": "2023-10-16T20:20:06Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 57,
"created_at": "2023-04-27T11:30:50Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 67,
"created_at": "2023-05-05T15:56:09Z",
"last_comment_at": "2023-08-23T13:27:56Z",
"last_comment_author": "giovp"
},
{
"number": 76,
"created_at": "2023-05-19T13:35:23Z",
"last_comment_at": "2024-07-22T13:44:12Z",
"last_comment_author": "melonora"
},
{
"number": 105,
"created_at": "2023-06-05T10:00:31Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 122,
"created_at": "2023-06-28T12:34:07Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 141,
"created_at": "2023-07-23T08:38:45Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 143,
"created_at": "2023-07-28T16:11:43Z",
"last_comment_at": "2025-02-25T16:43:37Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 165,
"created_at": "2023-10-13T01:39:33Z",
"last_comment_at": "2023-10-15T18:00:50Z",
"last_comment_author": "melonora"
},
{
"number": 166,
"created_at": "2023-10-13T13:20:01Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 189,
"created_at": "2023-12-12T20:16:03Z",
"last_comment_at": "2024-03-13T20:59:36Z",
"last_comment_author": "aeisenbarth"
},
{
"number": 190,
"created_at": "2024-01-06T16:09:14Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 194,
"created_at": "2024-02-08T01:29:49Z",
"last_comment_at": "2024-02-09T00:18:44Z",
"last_comment_author": "LucaMarconato"
},
{
"number": 195,
"created_at": "2024-02-27T18:13:21Z",
"last_comment_at": "2024-02-28T18:37:15Z",
"last_comment_author": "melonora"
},
{
"number": 206,
"created_at": "2024-03-13T16:48:40Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 214,
"created_at": "2024-03-21T15:51:26Z",
"last_comment_at": null,
"last_comment_author": null
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/scverse/napari-spatialdata",
"host": "github.com",
"name": "napari-spatialdata",
"owner": "scverse"
},
"metrics": {
"overall": {
"key": "overall",
"band": "good",
"name": "Overall health",
"note": null,
"notes": [],
"value": 74,
"inputs": {
"security": 62,
"vitality": 68,
"community": 65,
"governance": 77,
"engineering": 94
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "moderate",
"name": "Vitality",
"value": 68,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 52,
"inputs": {
"commits_last_year": 24,
"human_commit_share": 0.77,
"days_since_last_push": 23,
"active_weeks_last_year": 9
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 23 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 23
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "9/52 weeks with commits",
"points": 6.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 9
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "24 commits in the last year",
"points": 12.6,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 24
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"points": 4,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 92,
"inputs": {
"releases_count": 29,
"latest_release_tag": "v0.7.2",
"releases_from_tags": false,
"days_since_latest_release": 23,
"mean_days_between_releases": 71.7
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "29 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 29
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 23 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 23
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~71.7 days",
"points": 19.8,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 71.7
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 71,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 71 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 71
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 65,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "at_risk",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 48,
"inputs": {
"forks": 24,
"stars": 87,
"watchers": 12,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "87 stars",
"points": 31.4,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 87
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "24 forks",
"points": 11.3,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 24
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "12 watchers",
"points": 5.8,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 12
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "excellent",
"name": "Community health",
"note": null,
"notes": [],
"value": 85,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": true,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (BSD-3-Clause)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "BSD-3-Clause"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 18,
"status": "met",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 13.5,
"status": "met",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "good",
"name": "Sustainability & Governance",
"value": 77,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "good",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 76,
"inputs": {
"bus_factor": 3,
"contributors_sampled": 15,
"top_contributor_share": 0.262
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "3 contributor(s) cover half of all commits",
"points": 36,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 3
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 26% of commits",
"points": 16.6,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 26
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "15 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 15
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "moderate",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"merged_prs": 208,
"open_issues": 68,
"closed_issues": 94,
"issue_closed_ratio": 0.58,
"closed_unmerged_prs": 22
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "58% of issues closed",
"points": 27.1,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 58
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "208/230 decided PRs merged",
"points": 34.6,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 208,
"decided": 230
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 1/23 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 75,
"inputs": {
"followers": 1520,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "scverse",
"public_repos": 86,
"account_age_days": 1698
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "1,520 followers of scverse",
"points": 22.9,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 1520,
"login": "scverse"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "86 public repos, account ~4 yr old",
"points": 22.3,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 86
}
},
{
"code": "account_age_years",
"params": {
"years": 4
}
}
],
"max_points": 25
}
]
},
{
"key": "package_maintenance",
"band": "excellent",
"name": "Package maintenance",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"packages": [
"napari-spatialdata"
],
"ecosystems": "pypi",
"any_deprecated": false,
"min_days_since_publish": 23
},
"components": [
{
"key": "published_resolvable",
"name": "Published & resolvable",
"detail": "1 package(s) on pypi",
"points": 25,
"status": "met",
"details": [
{
"code": "packages_published",
"params": {
"count": 1,
"ecosystems": "pypi"
}
}
],
"max_points": 25
},
{
"key": "publish_recency",
"name": "Publish recency",
"detail": "latest publish 23 days ago",
"points": 35,
"status": "met",
"details": [
{
"code": "publish_recency",
"params": {
"days": 23
}
}
],
"max_points": 35
},
{
"key": "version_history",
"name": "Version history",
"detail": "28 published versions",
"points": 20,
"status": "met",
"details": [
{
"code": "published_versions",
"params": {
"count": 28
}
}
],
"max_points": 20
},
{
"key": "not_deprecated",
"name": "Not deprecated",
"detail": "active, not deprecated or yanked",
"points": 20,
"status": "met",
"details": [
{
"code": "package_not_deprecated",
"params": {}
}
],
"max_points": 20
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "excellent",
"name": "Engineering Quality",
"value": 94,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "excellent",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 90,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": true,
"has_precommit_config": true
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "4 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 4
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": "tox.ini",
"points": 16,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "tox.ini"
}
}
],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 9.6,
"status": "met",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"points": 16,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "excellent",
"name": "Documentation",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"topics": [
"napari",
"napari-plugin",
"spatial-analysis",
"spatial-omics",
"visualization"
],
"has_wiki": true,
"homepage": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"has_readme": true,
"has_docs_dir": true,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://spatialdata.scverse.org/projects/napari/en/latest/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "5 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 5
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "moderate",
"name": "Security",
"value": 62,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "moderate",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Branch-Protection, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"branch_protection",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 53,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 5.3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "17 out of 21 merged PRs checked by a CI test -- score normalized to 8",
"points": 2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 1/23 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 12 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "update tool detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "4 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 4",
"points": 3,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "dependency_advisories",
"band": "excellent",
"name": "Dependency advisories",
"note": "Excluded from scoring (no data or not applicable): No advisories left outstanding. Remaining weights renormalized. Matched the pypi:napari-spatialdata@0.7.2 runtime dependency closure — what installing the published package pulls in — 184 packages. Reachability is not analyzed.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"no_advisories_left_outstanding"
]
}
},
{
"code": "weights_renormalized",
"params": {}
},
{
"code": "advisories_scope_published",
"params": {
"package": "pypi:napari-spatialdata@0.7.2",
"assessed": 184
}
},
{
"code": "advisories_reachability",
"params": {}
}
],
"value": 100,
"inputs": {
"source": "osv",
"advisories": 0,
"affected_packages": 0,
"assessed_packages": 184,
"unassessed_packages": 0,
"affected_by_severity": "none",
"direct_affected_packages": 0
},
"components": [
{
"key": "direct_dependencies_free_of_known_advisories",
"name": "Direct dependencies free of known advisories",
"detail": "no direct dependency carries a known advisory",
"points": 35,
"status": "met",
"details": [
{
"code": "no_direct_advisories",
"params": {}
}
],
"max_points": 35
},
{
"key": "indirect_dependencies_free_of_known_advisories",
"name": "Indirect dependencies free of known advisories",
"detail": "no indirect dependency carries a known advisory",
"points": 25,
"status": "met",
"details": [
{
"code": "no_indirect_advisories",
"params": {}
}
],
"max_points": 25
},
{
"key": "no_advisories_left_outstanding",
"name": "No advisories left outstanding",
"detail": "no advisory carries a publication date",
"points": 0,
"status": "excluded",
"details": [
{
"code": "advisories_no_publication_date",
"params": {}
}
],
"max_points": 40
}
]
},
{
"key": "malicious_dependencies",
"band": "excellent",
"name": "Malicious dependencies",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"source": "osv",
"meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
"packages": [],
"red_flag": false,
"assessed_packages": 184,
"malicious_packages": 0,
"direct_malicious_packages": 0,
"withdrawn_malicious_packages": 0,
"installable_malicious_packages": 0
},
"components": [
{
"key": "no_dependency_reported_as_a_malicious_package",
"name": "No dependency reported as a malicious package",
"detail": "no dependency is reported as a malicious package",
"points": 100,
"status": "met",
"details": [
{
"code": "no_malicious_dependencies",
"params": {}
}
],
"max_points": 100
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 8
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "moderate",
"name": "AI Readiness",
"value": 58,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 35,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.662,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "51 of 77 human commits state their intent (structured subject or explanatory body)",
"points": 35.3,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 51,
"sampled": 77
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "good",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 72,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [
"docs/Makefile"
],
"has_devcontainer": false,
"has_linter_config": true,
"typecheck_configs": [
".mypy.ini"
],
"agent_commit_share": 0.01,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0.04
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": "docs/Makefile",
"points": 18,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "docs/Makefile"
}
}
],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": "tox.ini",
"points": 11,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "tox.ini"
}
}
],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": ".mypy.ini",
"points": 11,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": ".mypy.ini"
}
}
],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "1 of the last 100 commits agent-authored or agent-credited",
"points": 2,
"status": "partial",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 1,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "4 of the last 100 commits are automated dependency updates",
"points": 8,
"status": "met",
"details": [
{
"code": "dependency_bot_commits",
"params": {
"count": 4,
"sampled": 100
}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "good",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 82,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 52059,
"source_files_sampled": 39,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python with type-check config (.mypy.ini)",
"points": 27,
"status": "partial",
"details": [
{
"code": "typecheck_config_language",
"params": {
"files": ".mypy.ini",
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/39 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 39,
"oversized": 0
}
}
],
"max_points": 55
}
]
},
{
"key": "ai_interfaces",
"band": "at_risk",
"name": "Machine-readable interfaces",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"example_dirs": [
"examples",
"notebooks"
],
"has_mcp_signal": false,
"api_schema_files": []
},
"components": [
{
"key": "api_schema_openapi_graphql_proto",
"name": "API schema (OpenAPI/GraphQL/proto)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 40
},
{
"key": "mcp_server",
"name": "MCP server",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "runnable_examples",
"name": "Runnable examples",
"detail": "examples, notebooks",
"points": 40,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "examples, notebooks"
}
}
],
"max_points": 40
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-26T02:23:49.904981Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/s/scverse/napari-spatialdata.svg",
"full_name": "scverse/napari-spatialdata",
"license_state": "standard",
"license_spdx": "BSD-3-Clause"
}