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#computational-biophysics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

9 records
Tagged “computational-biophysics”Ranked by health index
PyPI
67Moderatehealth index
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1↓ 3,758/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
63Moderatehealth index
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
61Moderatehealth index
elkins-lab/synth-saxs
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
Python★ 1↓ 3,502/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
60Moderatehealth index
elkins-lab/diff-biophys
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
Python★ 0Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
59Moderatehealth index
elkins-lab/synth-nmr
NMR spectroscopy calculations for protein structures. Jupyter Notebook tutorials are available to visualize the concepts.
Python★ 2Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
elkins-lab/diff-ensemble
Differentiable VAE framework for predicting protein structural ensembles (IDPs) consistent with SAXS and NMR data. Built on JAX/Flax.
Python★ 1↓ 158/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
elkins-lab/resonance-flow
JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
52Moderatehealth index
elkins-lab/synth-cryo-em
Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.
Python · Jupyter Notebook★ 2Jul 17, 2026
No licenseJul 17, 2026 · metrics 1.13.0
PyPI
48At riskhealth index
elkins-lab/synth-dynamics
Fast Langevin dynamics engine using the Anisotropic Network Model (ANM) for rapid protein conformational ensemble generation.
Python · Shell★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0