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#scverse

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

8 records
Tagged “scverse”Ranked by health index
PyPI
98Exceptionalhealth index
scverse/anndata
Annotated data.
Python★ 768↓ 1.7M/moAug 27, 2026
BSD-3-ClauseAug 27, 2026 · metrics 2.10.0
PyPI
98Exceptionalhealth index
scverse/scanpy
Single-cell analysis in Python. Scales to >100M cells.
Python★ 2,559↓ 723.9K/moSep 12, 2026
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
PyPI
95Exceptionalhealth index
scverse/pertpy
Single-cell perturbation analysis
Python★ 337↓ 7,588/moAug 24, 2026
MITAug 24, 2026 · metrics 2.10.0
PyPI
94Exceptionalhealth index
scverse/scirpy
A scanpy extension to analyse single-cell TCR and BCR data.
Python★ 265↓ 3,226/moSep 19, 2026
BSD-3-ClauseSep 19, 2026 · metrics 2.10.0
PyPI
92Excellenthealth index
YosefLab/scib-metrics
Accelerated, Python-only, single-cell integration benchmarking metrics
Python★ 97Sep 12, 2026
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
PyPI
91Excellenthealth index
scverse/decoupler
Python package to perform enrichment analysis from omics data.
Python★ 294Sep 18, 2026
BSD-3-ClauseSep 18, 2026 · metrics 2.10.0
PyPI
90Excellenthealth index
scverse/rapids-singlecell
rapids-singlecell: GPU-accelerated framework for scRNA analysis
Python · Cuda★ 394Sep 12, 2026
MITSep 12, 2026 · metrics 2.10.0
PyPI
87Excellenthealth index
scverse/muon
muon is a multimodal omics Python framework
Python★ 279↓ 16.5K/moSep 14, 2026
BSD-3-ClauseSep 14, 2026 · metrics 2.10.0