#bioinformatics

Python library and a CLI tool to analyze protein sample files

A Rust library for parsing PDB (Protein Data Bank) files

Framework for building fast genomics web tools with WebAssembly and WebWorkers

Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

A BGEN file format reader library with python bindings. Maintained fork of limix/bgen and cbgen

A terminal-based molecular structure viewer

A fragment-based molecular assembly toolkit

Earl Grey: A fully automated TE curation and annotation pipeline

Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.

Generate realistic synthetic 3D Cryo-EM densities from structural models for testing algorithms and training ML models.

MCP interface to BioPython

Quick k-mer-based FASTA/FASTQ sequence record extraction, and SAM/BAM record filtering plus file annotation with k-mer tags.

Library of convenience functions specific to the CPG

Rust implementation of a fast, easy, interval tree library nim-lapper

A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.

Biobb_common is the base package required to use the biobb packages.

Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.

:dna: A batteries-included structural bioinformatics engine

A robust and fast clustering method for amplicon-based studies

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Build a Mine-schema database from PDB data. Load PDBj structural biology data into PostgreSQL with RDKit chemical search support.

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