#bioinformatics

Mapping sequencing data to De Bruijn graphs, fast

An open-source Python package for accurate and sensitive peptide and protein quantification.

A Go package for engineering organisms.

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The BridgeDb Library source code

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

NGLess: NGS with less work

Database for storing sample metadata

SortMeRNA: next-generation sequence filtering and alignment tool

A Julia package to read, write and manipulate macromolecular structures

Identifies relevant ligands in the PDB

The penultimate FastQ processor. Flexible Read Modification.

BGZF compression library in Rust

Cancer genomics data from osteosarc.com

Open-source bioinformatics components for Dash

gene tree React component

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Quality of life improvements in Rust.

Powerful long read aligner for Ruby

A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.

alignment to variation graph inducer

A crate for working with the Task Execution Service (TES) specification.

Genomic data analysis suite in python

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Toolkit for downstream processing of CiFi long reads.

A library for efficient nucleotide sequence manipulation using 2-bit encoding

Framework for building fast genomics web tools with WebAssembly and WebWorkers