Public recordCritical
Software health reportschema 0.27.0 · metrics 2.3.1 · 2026-08-01 12:19 UTC
broadinstitute / ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
broadinstitute/ichorCNA holds a health index of 16 out of 100, placing it in the Critical band. It scores highest on Community & Adoption (63/100) and lowest on AI Readiness (5/100). It was last updated 863 days ago. A single contributor accounts for most of its recent work.
16
overall / 100Software health index
Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.
16
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
Score profile
Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.
The weighted overall 33 is calibrated to 27 on the published index scale (record calibration 2026-08-02).
Ownership
Broad InstituteOrganization
1,290 followers1,515 public repossince Sep 2010
This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.
Metrics by category
Vitality
Is the project alive — is code being written and are releases shipping?
15
Development activity
1Critical
Abandonment alert
Work has arrived and nobody has attended to it
no human commit in 2418 daysautomated commits excludedpull requests left unansweredissues left unansweredreleases stalledOpenSSF Scorecard reports it unmaintainedOverall rating: At Risk ceiling
Silence alone is never the finding — a small, finished library may need no commits for years. This alert requires both: no human commit for a long time, and obligations the project is visibly not discharging. Automated commits do not count as maintenance.
How abandonment is assessedHow it's scored
| 0/36 | Push recency — last push 863 days ago |
| 0/36 | Commit cadence — 0/52 weeks with commits |
| 0/18 | Commit volume — 0 commits in the last year |
| 0/10 | OpenSSF Scorecard: Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
Inputs used
| commits_last_year | 0 |
| human_commit_share | 1 |
| days_since_last_push | 863 |
| active_weeks_last_year | 0 |
Release discipline
36Weak
How it's scored
| 27/27 | Ships releases — 2 releases published |
| 0/36 | Release recency — latest release 2,637 days ago |
| 5.4/27 | Release cadence — a release every ~640.3 days |
| 0/10 | OpenSSF Scorecard: Signed-Releases — no data |
Inputs used
| releases_count | 2 |
| latest_release_tag | v0.2.0 |
| releases_from_tags | no |
| days_since_latest_release | 2,637 |
| mean_days_between_releases | 640.3 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.
Community & Adoption
Does the project have users, downloads, attention, and a welcoming setup for contributors?
63
Popularity & adoption
61Moderate
How it's scored
| 37.8/60 | Stars — 214 stars |
| 16.7/25 | Forks — 103 forks |
| 6.8/15 | Watchers — 18 watchers |
Inputs used
| forks | 103 |
| stars | 214 |
| watchers | 18 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Community health
65Good
How it's scored
| 22.5/22.5 | README |
| 22.5/22.5 | License — recognized license (GPL-3.0) |
| 0/18 | CONTRIBUTING guide |
| 13.5/13.5 | Code of conduct |
| 0/7.2 | Issue template |
| 0/6.3 | PR template |
Inputs used
| has_readme | yes |
| has_license | yes |
| readme_badges | — |
| has_contributing | no |
| has_issue_template | no |
| has_code_of_conduct | yes |
| readme_badge_services | — |
| has_pull_request_template | no |
Sustainability & Governance
Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?
39
Maintainer resilience (bus factor)
28At Risk
How it's scored
| 9/54 | Bus factor — 1 contributor(s) cover half of all commits |
| 6.5/22.5 | Commit distribution — top contributor authored 71% of commits |
| 2.7/13.5 | Contributor breadth — 2 contributors |
| 10/10 | OpenSSF Scorecard: Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
Inputs used
| bus_factor | 1 |
| contributors_sampled | 2 |
| top_contributor_share | 0.709 |
Issue & PR responsiveness
15Critical
How it's scored
| 12.7/42 | Issue resolution — 30% of issues closed |
| 0/30 | PR acceptance — 0/6 decided PRs merged |
| 0/13 | Newcomer PR acceptance — no first-time contributor's PR decided in 30d |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
Inputs used
| merged_prs | 0 |
| open_issues | 97 |
| closed_issues | 42 |
| prs_merged_7d | — |
| prs_decided_7d | — |
| prs_merged_30d | — |
| prs_decided_30d | — |
| issue_closed_ratio | 0.302 |
| closed_unmerged_prs | 6 |
| first_time_authors_30d | — |
| first_time_prs_merged_30d | — |
| first_time_prs_decided_30d | — |
Excluded from scoring (no data or not applicable): newcomer_pr_acceptance. Remaining weights renormalized.
Ownership & stewardship
77Good
How it's scored
| 30/30 | Ownership backing — organization-owned |
| 0/20 | Verified domain |
| 22.4/25 | Owner reach — 1,290 followers of broadinstitute |
| 25/25 | Track record — 1,515 public repos, account ~15 yr old |
Inputs used
| followers | 1,290 |
| owner_type | Organization |
| is_verified | — |
| owner_login | broadinstitute |
| public_repos | 1,515 |
| account_age_days | 5,804 |
Engineering Quality
Are baseline engineering and documentation practices in place?
25
Engineering practices
1Critical
How it's scored
| 0/24 | CI workflows |
| 0/24 | Tests present |
| 0/16 | Linter config |
| 0/9.6 | Pre-commit hooks |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — no data |
Inputs used
| has_ci | no |
| has_tests | no |
| has_editorconfig | no |
| has_linter_config | no |
| has_precommit_config | no |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.
Documentation
60Moderate
How it's scored
| 30/30 | README |
| 0/25 | Documentation directory |
| 0/15 | Documentation / homepage site |
| 10/10 | Repository description |
| 10/10 | Topics — 3 topics |
| 10/10 | Wiki |
Inputs used
| topics | copy-number, low-coverage-sequencing, cell-free-dna |
| has_wiki | yes |
| homepage | — |
| has_readme | yes |
| has_docs_dir | no |
| has_description | yes |
Security
Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?
30
Security posture
30At Risk
How it's scored
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0/2.5 | CI-Tests — no data |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
| 0/10 | Dangerous-Workflow — no data |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | License — license file detected |
| 0/7.5 | Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| 0/5 | Packaging — no data |
| 0/5 | Pinned-Dependencies — no data |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — no data |
| 0/7.5 | Token-Permissions — no data |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Inputs used
| source | openssf_scorecard |
| checks_evaluated | 12 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 6 |
| scorecard_aggregate | 3 |
Excluded from scoring (no data or not applicable): ci_tests, dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions. Remaining weights renormalized.
AI Readiness
How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.
5
Agent context & guidance
12Critical
How it's scored
| 0/45 | Agent instructions — no CLAUDE.md / AGENTS.md / editor rules |
| 0/15 | Machine-readable docs (llms.txt) |
| 12.3/40 | Legible commit history — 23 of 100 human commits state their intent (structured subject or explanatory body) |
Inputs used
| has_llms_txt | no |
| legible_history_share | 0.23 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
How it's scored
| 0/18 | One-command bootstrap |
| 0/22 | Automated tests |
| 0/11 | Lint / format config |
| 0/11 | Static type checking |
| 0/10 | Reproducible environment |
| 0/10 | Demonstrated agent practice — no agent-authored commits among the last 100 |
| 0/8 | Automated maintenance — no automated dependency updates observed |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — no data |
Inputs used
| has_nix | no |
| has_tests | no |
| lockfiles | — |
| has_dockerfile | no |
| typed_language | no |
| bootstrap_files | — |
| has_devcontainer | no |
| has_linter_config | no |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.
Code legibility for models
1Critical
How it's scored
| 0/45 | Type-checkable code — R without a type-check config |
| 0/55 | Manageable file sizes — no source files detected |
Inputs used
| primary_language | R |
| largest_source_bytes | — |
| source_files_sampled | 0 |
| oversized_source_files | 0 |
Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.
Key facts
214GitHub stars
2contributors
0commits, last 12 months
863days since last push
2releases
1bus factor
97open issues
—package ecosystems
Data collection warnings
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
More detail
Star and fork history 0 ★ / 103 ⇿
0Stars
103Forks
1Releases
When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.
Major 0Minor 1Patch 0
Each point covers 8 days.
OpenSSF Scorecard 3.0 / 10
3.0aggregate
Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| n/a | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 3 contributing companies or organizations -- score normalized to 10 |
| n/a | Dangerous-Workflow | no workflows found |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 0 | Maintained | 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| n/a | Packaging | packaging workflow not detected |
| n/a | Pinned-Dependencies | no dependencies found |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| n/a | Signed-Releases | no releases found |
| n/a | Token-Permissions | No tokens found |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
All dependencies not collected
The resolved dependency set could not be collected for this report: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Raw JSON report machine-readable
{
"data": {
"repo": {
"topics": [
"copy-number",
"low-coverage-sequencing",
"cell-free-dna"
],
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},
"pushed_at": "2024-03-20T13:29:09Z",
"created_at": "2017-01-06T16:47:46Z",
"owner_type": "Organization",
"updated_at": "2026-07-18T12:48:24Z",
"description": "Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.",
"is_archived": false,
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"license": {
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"spdx_id": "GPL-3.0",
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"file_present": true,
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},
"activity": {
"releases": [
{
"tag": "v0.2.0",
"kind": "minor",
"published_at": "2019-05-13T00:51:56Z"
},
{
"tag": "v0.1.0",
"kind": "minor",
"published_at": "2017-08-10T17:30:49Z"
}
],
"recent_commits": [
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"oid": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
"body": "Fixes #68 where the corrected copy number for each bin is tumor-fraction-corrected even for low tumor fraction samples. correctIntegerCN now makes use of the argument \"minPurityToCorrect\" for bin-level correction (default set to 0.1 tumor fraction). The plotting, which uses the corrected copy number, should now be fixed.",
"is_bot": false,
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"headline": "update plotting of corrected integer CN",
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"author_login": "gavinha",
"committed_at": "2019-08-12T23:03:56Z",
"body_truncated": false,
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},
{
"oid": "b61ee8f77088486e7fdd553b9ab45e5106cdb267",
"body": "In getGenomeWidePositions, chrs arg is converted to character vector to avoid problem when finding chromosome positions\nFixes #58",
"is_bot": false,
"headline": "fix error in getGenomeWidePositions",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-24T19:05:41Z",
"body_truncated": false,
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},
{
"oid": "c9f4378e2749b744719dd3b3fc34fbb7a7bca1dd",
"body": "Avoid error for genomeWide plot of single chromosome - fixes #57\nModified runIchorCNA.R to not coerce list into GRangesList; require GenomicRanges v1.36.0; might help with #58.\nNew hg38 Panel of Normal files with GRanges version (replaces deprecated RangedData versions)",
"is_bot": false,
"headline": "fix plotting errors; update panel of normals",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-23T06:16:15Z",
"body_truncated": false,
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{
"oid": "bc89d52dc5a02e77094e5ca770c691494aca0911",
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"headline": "convert to GRanges for PON script",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-19T18:25:03Z",
"body_truncated": false,
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"oid": "569327b76c8c43ab4984efd96e5f47fe21eb74f5",
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"headline": "add getSeqInfo to NAMESPACE; fix #56",
"author_name": "Gavin Ha",
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"committed_at": "2019-07-17T17:07:18Z",
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"oid": "5c91f097f5a8d5e313943cc06690c7bda39d035f",
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"headline": "bug fix - typo for params",
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"body_truncated": false,
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},
{
"oid": "d1725c811deef170c7f35b431f2a33824eae1030",
"body": "Enhancement (issue #41): High level amplifications are corrected to represent the purity/ploidy correct integer CN. These are provided as 3 additional columns in cna.seg, seg.txt.\n (Corrected_Copy_Number, Corrected_Call, logR_Copy_Number)\nPlotting: Handles seqinfo input to determine the actual lengt\n[…]\ntered_median.rd) is now a GRanges object. Also fixed issue with TargetedSequences object. #50 #55\nSnakemake: included additional user options for how much subclonal fraction to tolerate for solutions.",
"is_bot": false,
"headline": "bug fixes, updates, enhancements",
"author_name": "Gavin Ha",
"author_login": "gavinha",
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"headline": "typo/bugs #54; add getSeqInfo",
"author_name": "Gavin Ha",
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},
{
"oid": "e271b7665a0b83604cbbfe09252d09aab418982e",
"body": null,
"is_bot": false,
"headline": "fix ichorCNA-package.Rd during install #52",
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"committed_at": "2019-06-27T23:19:18Z",
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"headline": "Merge branch 'master' of github.com:broadinstitute/ichorCNA",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-27T20:09:05Z",
"body_truncated": false,
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},
{
"oid": "03f353f9969573f5066ff632cb3dfbb171afced2",
"body": null,
"is_bot": false,
"headline": "update contacts, version",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-27T20:04:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d91730cd728dffeee62ea0171189d2fbcb7215e2",
"body": null,
"is_bot": false,
"headline": "move biocViews below depends",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-26T20:07:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00aa1e1055508e83f5183eb43b35910b7e5df3e9",
"body": null,
"is_bot": false,
"headline": "add biocViews",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-26T20:05:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b32b21519c150bd8e09258ad3896cba4550e41cc",
"body": "include wigToGRanges in list of public functions. Address issue #50",
"is_bot": false,
"headline": "expose wigToGRanges",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-05T20:02:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6ede008f2b2ce15f9dc67ff9cf122c399b5c13ee",
"body": null,
"is_bot": false,
"headline": "user specify chrY coverage cutoff in snakemake",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-05-30T00:57:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "414f3c1a8c32fbe4236293b339710186513aa03d",
"body": "The deprecation of RangedData, which was the main data structure used by HMMcopy, required the transition of the code to use GRanges (GenomicRanges package). A new function \"wigToGRanges\" has been added and other changes have been made throughout the code to support GRanges instead of RangedData. Addresses #50\nAlso, added the ability for users to specify in the snakemake pipeline the fraction of chrY coverage cutoff to determine male vs female.",
"is_bot": false,
"headline": "switched to GRanges",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-05-30T00:57:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "99801a51fa2580c3b5ca38a4e9f41b94b364a641",
"body": null,
"is_bot": false,
"headline": "add ichorCNA_genomeStyle to snakemake config.yaml",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-02-13T18:28:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6d7e1563dfe8bbb62de4e2a848a6d458ae0e3b05",
"body": "For slurm:\nsnakemake -s ichorCNA.snakefile --cluster-config config/cluster_slurm.yaml --cluster \"sbatch -p {cluster.partition} --mem={cluster.mem} -t {cluster.time} -c {cluster.ncpus} -n {cluster.ntasks} -o {cluster.output}\" -j 50\n\nFor qsub:\nsnakemake -s ichorCNA.snakefile --jobscript config/cluster_qsub.sh --cluster-config config/cluster_qsub.yaml --cluster-sync \"qsub -l h_vmem={cluster.h_vmem},h_rt={cluster.h_rt} -pe {cluster.pe} -binding {cluster.binding}\" -j 50",
"is_bot": false,
"headline": "updated cluster usage",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-02-06T18:50:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c79efe39dc75734517adbc673576bf5d980b6e5b",
"body": "Fixes #43 where chrX is not properly normalize for samples with UCSC chromosome names",
"is_bot": false,
"headline": "fix bug that doesn't properly normalize chrX to relative log ratios",
"author_name": "Gavin Ha",
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"note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"ci_tests",
"dangerous_workflow",
"packaging",
"pinned_dependencies",
"signed_releases",
"token_permissions"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 30,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 12,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 6,
"scorecard_aggregate": 3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no workflows found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "No tokens found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "exceptional",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"commit_weight_rule": {
"min_commits": 50,
"min_commit_share": 0.1
},
"review_only_matches": 0,
"below_threshold_exposures": [],
"assessed_self_published_locations": 2
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 5,
"weight": 0.04,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 12,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.23,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "23 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 12.3,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 23,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_pinned_dependencies"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "critical",
"name": "Code legibility for models",
"note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"manageable_file_sizes"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"primary_language": "R",
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "R without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "R"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "no source files detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_source_files",
"params": {}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
}
],
"classification": {
"labels": [],
"scores": {},
"primary": null,
"evidence": [],
"artifacts": [],
"confidence": "none",
"host_extension": false,
"runs_as_process": false,
"consumed_by_code": false
},
"metrics_version": "2.3.1"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-08-01T12:19:46.628283Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/ichorCNA.svg",
"full_name": "broadinstitute/ichorCNA",
"license_state": "standard",
"license_spdx": "GPL-3.0"
}Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.
Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.3.1, schema v0.27.0 — full methodology · metrics wiki.
How one result sits in the wider record: aggregate statistics.