Публічний реєстрКритичний
Звіт про здоров'я програмного забезпеченнясхема 0.27.0 · метрики 2.3.1 · 2026-08-01 12:19 UTC
broadinstitute / ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
broadinstitute/ichorCNA має індекс здоров’я 16 зі 100, що відповідає смузі «Критичний». Найвищий показник — Community & Adoption (63/100), найнижчий — AI Readiness (5/100). Останнє оновлення було 863 дні тому. Більшість нещодавньої роботи виконує один учасник.
16
загалом / 100Індекс здоров'я програмного забезпечення
Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє зважене середнє, відкаліброване за розподілом публічного реєстру, тож діапазони мають перцентильний зміст; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 34 («У зоні ризику»).
16
Винятковий93-100Верхній щабель реєстру (≈ топ-5%); відповідає практично всім перевіреним критеріям
Відмінний80-92Сильний за всіма напрямами; незначні прогалини
Добрий65-79Здоровий; прогалини обмежені та керовані
Помірний50-64Прийнятний, але з помітними прогалинами; рекомендовано перевірку
Слабкий35-49Суттєві недоліки в кількох сферах
У зоні ризику20-34Суттєві слабкі місця; впровадження потребує обережності
Критичний1-19Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
Профіль оцінок
Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.
Зважений загальний бал 33 калібровано до 27 за шкалою опублікованого індексу (калібрування реєстру 2026-08-02).
Власність
Broad InstituteОрганізація
1 290 підписників1 515 публічних репозиторіївз вер. 2010 р.
За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.
Метрики за категоріями
Життєздатність
Чи живий проєкт — чи пишеться код і чи виходять релізи?
15
Активність розробки
1Критичний
Ознака покинутості
Робота надійшла, і нею ніхто не зайнявся
жодного людського коміта за 2418 дн.автоматичні коміти не врахованопул-реквести без відповідіішюси без відповідірелізи зупинилисяOpenSSF Scorecard визнає проєкт без супроводуЗагальна оцінка: стеля «У зоні ризику»
Сама лише тиша ніколи не є підставою — невеликій завершеній бібліотеці коміти можуть бути не потрібні роками. Ця ознака вимагає двох умов водночас: тривалої відсутності людських комітів і зобов'язань, які проєкт очевидно не виконує. Автоматичні коміти супроводженням не вважаються.
Як оцінюється покинутістьЯк обчислюється оцінка
| 0/36 | Свіжість push — останній push 863 дн. тому |
| 0/36 | Ритм комітів — 0/52 тижнів із комітами |
| 0/18 | Обсяг комітів — 0 комітів за останній рік |
| 0/10 | OpenSSF Scorecard: Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
Використані вхідні дані
| commits_last_year | 0 |
| human_commit_share | 1 |
| days_since_last_push | 863 |
| active_weeks_last_year | 0 |
Дисципліна релізів
36Слабкий
Як обчислюється оцінка
| 27/27 | Випускає релізи — опубліковано 2 релізів |
| 0/36 | Свіжість релізів — останній реліз 2 637 дн. тому |
| 5.4/27 | Ритм релізів — реліз кожні ~640,3 дн. |
| 0/10 | OpenSSF Scorecard: Signed-Releases — немає даних |
Використані вхідні дані
| releases_count | 2 |
| latest_release_tag | v0.2.0 |
| releases_from_tags | ні |
| days_since_latest_release | 2 637 |
| mean_days_between_releases | 640,3 |
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Signed-Releases. Залишкові ваги перенормовано.
Спільнота та впровадження
Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?
63
Популярність і впровадження
61Помірний
Як обчислюється оцінка
| 37.8/60 | Зірки — 214 зірок |
| 16.7/25 | Форки — 103 форків |
| 6.8/15 | Спостерігачі — 18 спостерігачів |
Використані вхідні дані
| forks | 103 |
| stars | 214 |
| watchers | 18 |
| growth_state | unverified |
| growth_factor_pct | 100 |
| growth_unverified_reason | no_history |
Здоров'я спільноти
65Добрий
Як обчислюється оцінка
| 22.5/22.5 | README |
| 22.5/22.5 | Ліцензія — визнана ліцензія (GPL-3.0) |
| 0/18 | Настанови CONTRIBUTING |
| 13.5/13.5 | Кодекс поведінки |
| 0/7.2 | Шаблон issue |
| 0/6.3 | Шаблон PR |
Використані вхідні дані
| has_readme | так |
| has_license | так |
| readme_badges | — |
| has_contributing | ні |
| has_issue_template | ні |
| has_code_of_conduct | так |
| readme_badge_services | — |
| has_pull_request_template | ні |
Сталість та врядування
Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?
39
Стійкість мейнтейнерів (бас-фактор)
28У зоні ризику
Як обчислюється оцінка
| 9/54 | Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів |
| 6.5/22.5 | Розподіл комітів — головний контриб’ютор — автор 71% комітів |
| 2.7/13.5 | Широта контриб’юторів — 2 контриб’юторів |
| 10/10 | OpenSSF Scorecard: Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
Використані вхідні дані
| bus_factor | 1 |
| contributors_sampled | 2 |
| top_contributor_share | 0,709 |
Реактивність на issue та PR
15Критичний
Як обчислюється оцінка
| 12.7/42 | Вирішення issue — закрито 30% issue |
| 0/30 | Прийняття PR — злито 0/6 вирішених PR |
| 0/13 | Newcomer PR acceptance — за 30 дн. не вирішено жодного PR від новачка |
| 0/15 | OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
Використані вхідні дані
| merged_prs | 0 |
| open_issues | 97 |
| closed_issues | 42 |
| prs_merged_7d | — |
| prs_decided_7d | — |
| prs_merged_30d | — |
| prs_decided_30d | — |
| issue_closed_ratio | 0,302 |
| closed_unmerged_prs | 6 |
| first_time_authors_30d | — |
| first_time_prs_merged_30d | — |
| first_time_prs_decided_30d | — |
Виключено з оцінювання (немає даних або не застосовно): newcomer_pr_acceptance. Залишкові ваги перенормовано.
Власність та опіка
77Добрий
Як обчислюється оцінка
| 30/30 | Підтримка власника — у власності організації |
| 0/20 | Верифікований домен |
| 22.4/25 | Охоплення власника — 1 290 підписників у broadinstitute |
| 25/25 | Послужний список — 1 515 публічних репозиторіїв, вік облікового запису ~15 р. |
Використані вхідні дані
| followers | 1 290 |
| owner_type | Organization |
| is_verified | — |
| owner_login | broadinstitute |
| public_repos | 1 515 |
| account_age_days | 5 804 |
Інженерна якість
Чи наявні базові інженерні практики та документація?
25
Інженерні практики
1Критичний
Як обчислюється оцінка
| 0/24 | Процеси CI |
| 0/24 | Наявні тести |
| 0/16 | Конфігурація лінтера |
| 0/9.6 | Pre-commit-хуки |
| 0/6.4 | .editorconfig |
| 0/20 | OpenSSF Scorecard: CI-Tests — немає даних |
Використані вхідні дані
| has_ci | ні |
| has_tests | ні |
| has_editorconfig | ні |
| has_linter_config | ні |
| has_precommit_config | ні |
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: CI-Tests. Залишкові ваги перенормовано.
Документація
60Помірний
Як обчислюється оцінка
| 30/30 | README |
| 0/25 | Каталог документації |
| 0/15 | Сайт документації / домашня сторінка |
| 10/10 | Опис репозиторію |
| 10/10 | Теми — 3 тем |
| 10/10 | Wiki |
Використані вхідні дані
| topics | copy-number, low-coverage-sequencing, cell-free-dna |
| has_wiki | так |
| homepage | — |
| has_readme | так |
| has_docs_dir | ні |
| has_description | так |
Безпека
Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?
30
Стан безпеки
30У зоні ризику
Як обчислюється оцінка
| 7.5/7.5 | Binary-Artifacts — no binaries found in the repo |
| 0/7.5 | Branch-Protection — branch protection not enabled on development/release branches |
| 0/2.5 | CI-Tests — немає даних |
| 0/2.5 | CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected |
| 0/7.5 | Code-Review — Found 0/30 approved changesets -- score normalized to 0 |
| 2.5/2.5 | Contributors — project has 3 contributing companies or organizations -- score normalized to 10 |
| 0/10 | Dangerous-Workflow — немає даних |
| 0/7.5 | Dependency-Update-Tool — no update tool detected |
| 0/5 | Fuzzing — project is not fuzzed |
| 2.5/2.5 | Ліцензія — license file detected |
| 0/7.5 | Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| 0/5 | Packaging — немає даних |
| 0/5 | Pinned-Dependencies — немає даних |
| 0/5 | SAST — no SAST tool detected |
| 0/5 | Security-Policy — security policy file not detected |
| 0/7.5 | Signed-Releases — немає даних |
| 0/7.5 | Token-Permissions — немає даних |
| 7.5/7.5 | Vulnerabilities — 0 existing vulnerabilities detected |
Використані вхідні дані
| source | openssf_scorecard |
| checks_evaluated | 12 |
| scorecard_version | v5.5.0 |
| checks_inconclusive | 6 |
| scorecard_aggregate | 3 |
Виключено з оцінювання (немає даних або не застосовно): ci_tests, dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions. Залишкові ваги перенормовано.
Готовність до ШІ
Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Має свідомо малу вагу (4%): агентний інструментарій — реальний сигнал супроводу, але репозиторій без нього все одно може отримати 100/100.
5
Контекст і настанови для агентів
12Критичний
Як обчислюється оцінка
| 0/45 | Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора |
| 0/15 | Машиночитана документація (llms.txt) |
| 12.3/40 | Читабельна історія комітів — намір зазначено у 23 з 100 людських комітів (структурований заголовок або пояснювальний текст) |
Використані вхідні дані
| has_llms_txt | ні |
| legible_history_share | 0,23 |
| agent_instruction_files | — |
| agent_instruction_max_bytes | — |
Як обчислюється оцінка
| 0/18 | Розгортання однією командою |
| 0/22 | Автоматизовані тести |
| 0/11 | Конфігурація лінтера / форматера |
| 0/11 | Статична перевірка типів |
| 0/10 | Відтворюване середовище |
| 0/10 | Підтверджена практика роботи з агентами — серед останніх 100 комітів немає створених агентом |
| 0/8 | Автоматизоване супроводження — автоматичних оновлень залежностей не виявлено |
| 0/10 | OpenSSF Scorecard: Pinned-Dependencies — немає даних |
Використані вхідні дані
| has_nix | ні |
| has_tests | ні |
| lockfiles | — |
| has_dockerfile | ні |
| typed_language | ні |
| bootstrap_files | — |
| has_devcontainer | ні |
| has_linter_config | ні |
| typecheck_configs | — |
| agent_commit_share | 0 |
| toolchain_manifests | — |
| dependency_bot_commit_share | 0 |
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Pinned-Dependencies. Залишкові ваги перенормовано.
Читабельність коду для моделей
1Критичний
Як обчислюється оцінка
| 0/45 | Типізований код — R без конфігурації перевірки типів |
| 0/55 | Керовані розміри файлів — файлів вихідного коду не виявлено |
Використані вхідні дані
| primary_language | R |
| largest_source_bytes | — |
| source_files_sampled | 0 |
| oversized_source_files | 0 |
Виключено з оцінювання (немає даних або не застосовно): Керовані розміри файлів. Залишкові ваги перенормовано.
Ключові факти
214зірок GitHub
2контриб'юторів
0комітів за останні 12 місяців
863днів від останнього пушу
2релізів
1бас-фактор
97відкритих issue
—пакетних екосистем
Попередження щодо збору даних
- Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
- GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Докладніше
Історія зірок і форків 0 ★ / 103 ⇿
0Зірки
103Форки
1Релізи
Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.
Мажорні 0Мінорні 1Патчі 0
Кожна точка охоплює 8 днів.
OpenSSF Scorecard 3.0 / 10
3.0сукупно
Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).
| 10 | Binary-Artifacts | no binaries found in the repo |
| 0 | Branch-Protection | branch protection not enabled on development/release branches |
| н/д | CI-Tests | no pull request found |
| 0 | CII-Best-Practices | no effort to earn an OpenSSF best practices badge detected |
| 0 | Code-Review | Found 0/30 approved changesets -- score normalized to 0 |
| 10 | Contributors | project has 3 contributing companies or organizations -- score normalized to 10 |
| н/д | Dangerous-Workflow | no workflows found |
| 0 | Dependency-Update-Tool | no update tool detected |
| 0 | Fuzzing | project is not fuzzed |
| 10 | License | license file detected |
| 0 | Maintained | 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 |
| н/д | Packaging | packaging workflow not detected |
| н/д | Pinned-Dependencies | no dependencies found |
| 0 | SAST | no SAST tool detected |
| 0 | Security-Policy | security policy file not detected |
| н/д | Signed-Releases | no releases found |
| н/д | Token-Permissions | No tokens found |
| 10 | Vulnerabilities | 0 existing vulnerabilities detected |
Усі залежності не зібрано
Не вдалося зібрати розв'язаний набір залежностей для цього звіту: GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository
Звіт у форматі JSON машиночитний
{
"data": {
"repo": {
"topics": [
"copy-number",
"low-coverage-sequencing",
"cell-free-dna"
],
"is_fork": false,
"size_kb": 11270,
"has_wiki": true,
"homepage": null,
"languages": {
"R": 104262,
"Shell": 608
},
"pushed_at": "2024-03-20T13:29:09Z",
"created_at": "2017-01-06T16:47:46Z",
"owner_type": "Organization",
"updated_at": "2026-07-18T12:48:24Z",
"description": "Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.",
"is_archived": false,
"is_disabled": false,
"license_spdx": "GPL-3.0",
"default_branch": "master",
"license_spdx_raw": "GPL-3.0",
"primary_language": "R",
"significant_languages": [
"R"
]
},
"owner": {
"blog": "http://www.broadinstitute.org/",
"name": "Broad Institute",
"type": "Organization",
"login": "broadinstitute",
"company": null,
"location": "Cambridge, MA",
"followers": 1290,
"avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
"created_at": "2010-09-09T16:37:46Z",
"is_verified": null,
"public_repos": 1515,
"account_age_days": 5804
},
"license": {
"state": "standard",
"spdx_id": "GPL-3.0",
"raw_spdx": "GPL-3.0",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.2.0",
"kind": "minor",
"published_at": "2019-05-13T00:51:56Z"
},
{
"tag": "v0.1.0",
"kind": "minor",
"published_at": "2017-08-10T17:30:49Z"
}
],
"recent_commits": [
{
"oid": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
"body": "Fixes #68 where the corrected copy number for each bin is tumor-fraction-corrected even for low tumor fraction samples. correctIntegerCN now makes use of the argument \"minPurityToCorrect\" for bin-level correction (default set to 0.1 tumor fraction). The plotting, which uses the corrected copy number, should now be fixed.",
"is_bot": false,
"headline": "correct CN based on min tumor fraction",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-12-19T06:26:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "47ce8db4d81ada2d3ce09280661d1240f3dcd530",
"body": null,
"is_bot": false,
"headline": "fix bug when not estimating cell prev",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-08-22T23:11:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cd47551981c9e6667b0fc35df3dbc6502432a1e",
"body": null,
"is_bot": false,
"headline": "update plotting of corrected integer CN",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-08-12T23:03:56Z",
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"body": "In getGenomeWidePositions, chrs arg is converted to character vector to avoid problem when finding chromosome positions\nFixes #58",
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"headline": "fix error in getGenomeWidePositions",
"author_name": "Gavin Ha",
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"body": "Avoid error for genomeWide plot of single chromosome - fixes #57\nModified runIchorCNA.R to not coerce list into GRangesList; require GenomicRanges v1.36.0; might help with #58.\nNew hg38 Panel of Normal files with GRanges version (replaces deprecated RangedData versions)",
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"headline": "fix plotting errors; update panel of normals",
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"headline": "convert to GRanges for PON script",
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"headline": "add getSeqInfo to NAMESPACE; fix #56",
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"headline": "bug fix - typo for params",
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"body": "Enhancement (issue #41): High level amplifications are corrected to represent the purity/ploidy correct integer CN. These are provided as 3 additional columns in cna.seg, seg.txt.\n (Corrected_Copy_Number, Corrected_Call, logR_Copy_Number)\nPlotting: Handles seqinfo input to determine the actual lengt\n[…]\ntered_median.rd) is now a GRanges object. Also fixed issue with TargetedSequences object. #50 #55\nSnakemake: included additional user options for how much subclonal fraction to tolerate for solutions.",
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"headline": "bug fixes, updates, enhancements",
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"headline": "typo/bugs #54; add getSeqInfo",
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"headline": "fix ichorCNA-package.Rd during install #52",
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"headline": "Merge branch 'master' of github.com:broadinstitute/ichorCNA",
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"headline": "add biocViews",
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"body": "include wigToGRanges in list of public functions. Address issue #50",
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"headline": "expose wigToGRanges",
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"body": "The deprecation of RangedData, which was the main data structure used by HMMcopy, required the transition of the code to use GRanges (GenomicRanges package). A new function \"wigToGRanges\" has been added and other changes have been made throughout the code to support GRanges instead of RangedData. Addresses #50\nAlso, added the ability for users to specify in the snakemake pipeline the fraction of chrY coverage cutoff to determine male vs female.",
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"body": "For slurm:\nsnakemake -s ichorCNA.snakefile --cluster-config config/cluster_slurm.yaml --cluster \"sbatch -p {cluster.partition} --mem={cluster.mem} -t {cluster.time} -c {cluster.ncpus} -n {cluster.ntasks} -o {cluster.output}\" -j 50\n\nFor qsub:\nsnakemake -s ichorCNA.snakefile --jobscript config/cluster_qsub.sh --cluster-config config/cluster_qsub.yaml --cluster-sync \"qsub -l h_vmem={cluster.h_vmem},h_rt={cluster.h_rt} -pe {cluster.pe} -binding {cluster.binding}\" -j 50",
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"body": "Fixes #43 where chrX is not properly normalize for samples with UCSC chromosome names",
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"headline": "fix bug that doesn't properly normalize chrX to relative log ratios",
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"body": "The previous files had many bins that had scores < 0.9. This may be due to the use of different kmer read lengths.\nThis commit addresses Issue #22\nThe ones included in this commit were generated using the following:\n\nreference=\"GRCh38/Homo_sapiens_assembly38.fasta\";\nidxpref=\"GRCh38_index\";\npref=\"GRC\n[…]\nn/mapCounter -w 500000 -c chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY ${pref}_${kmer}bp.bw > map_hg38_500kb.wig",
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"headline": "hg19 gc map files for 10kb/50kb #35 [ci skip]",
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"headline": "read_counter use binSize wildcard in log [ci skip]",
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"headline": "hg38 mappability files; thanks to @leraman #22 [ci skip]",
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"headline": "fixes typo for #17",
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"headline": "add script to generate panel of normals #3",
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"headline": "refactor code for plotting genomeWide_all_sols",
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"headline": "fixed plotChrLine for plotSegs=F [ci skip]",
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"headline": "modifications to run with or without 'chr' contigs and hg38 aligned b…",
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"headline": "add hg38 centromere gap file for issue #1 [ci skip]",
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"detail": "top contributor authored 71% of commits",
"points": 6.5,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 71
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "2 contributors",
"points": 2.7,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 2
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "critical",
"name": "Issue & PR responsiveness",
"note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"newcomer_pr_acceptance"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 15,
"inputs": {
"merged_prs": 0,
"open_issues": 97,
"closed_issues": 42,
"prs_merged_7d": null,
"prs_decided_7d": null,
"prs_merged_30d": null,
"prs_decided_30d": null,
"issue_closed_ratio": 0.302,
"closed_unmerged_prs": 6,
"first_time_authors_30d": null,
"first_time_prs_merged_30d": null,
"first_time_prs_decided_30d": null
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "30% of issues closed",
"points": 12.7,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 30
}
}
],
"max_points": 42
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "0/6 decided PRs merged",
"points": 0,
"status": "missed",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 0,
"decided": 6
}
}
],
"max_points": 30
},
{
"key": "newcomer_pr_acceptance",
"name": "Newcomer PR acceptance",
"detail": "no first-time contributor's PR decided in 30d",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_newcomer_prs",
"params": {
"days": 30
}
}
],
"max_points": 13
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 77,
"inputs": {
"followers": 1290,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "broadinstitute",
"public_repos": 1515,
"account_age_days": 5804
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "1,290 followers of broadinstitute",
"points": 22.4,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 1290,
"login": "broadinstitute"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "1515 public repos, account ~15 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 1515
}
},
{
"code": "account_age_years",
"params": {
"years": 15
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "at_risk",
"name": "Engineering Quality",
"value": 25,
"weight": 0.19,
"metrics": [
{
"key": "engineering_practices",
"band": "critical",
"name": "Engineering practices",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_ci_tests"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_ci": false,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"topics": [
"copy-number",
"low-coverage-sequencing",
"cell-free-dna"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "3 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 3
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 30,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"ci_tests",
"dangerous_workflow",
"packaging",
"pinned_dependencies",
"signed_releases",
"token_permissions"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 30,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 12,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 6,
"scorecard_aggregate": 3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no workflows found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "No tokens found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "exceptional",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"commit_weight_rule": {
"min_commits": 50,
"min_commit_share": 0.1
},
"review_only_matches": 0,
"below_threshold_exposures": [],
"assessed_self_published_locations": 2
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 5,
"weight": 0.04,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 12,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.23,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "23 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 12.3,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 23,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_pinned_dependencies"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "critical",
"name": "Code legibility for models",
"note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"manageable_file_sizes"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"primary_language": "R",
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "R without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "R"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "no source files detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_source_files",
"params": {}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
}
],
"classification": {
"labels": [],
"scores": {},
"primary": null,
"evidence": [],
"artifacts": [],
"confidence": "none",
"host_extension": false,
"runs_as_process": false,
"consumed_by_code": false
},
"metrics_version": "2.3.1"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-08-01T12:19:46.628283Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/ichorCNA.svg",
"full_name": "broadinstitute/ichorCNA",
"license_state": "standard",
"license_spdx": "GPL-3.0"
}Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.
Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v2.3.1, схема v0.27.0 — повна методологія · вікі метрик.
Як окремий результат виглядає на тлі всього реєстру: сукупна статистика.