公开记录
软件健康报告模式 0.27.0 · 指标 2.3.1 · 2026-08-01 12:19 UTC

broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

RGPL-3.0★ 214 星标⑂ 103 复刻始于 2017年1月在 GitHub 上查看 ↗

broadinstitute/ichorCNA 的健康指数为 100 分中的 16 分,处于「危急」区间。 其得分最高的类别是Community & Adoption(63/100),最低的是AI Readiness(5/100)。 最近一次更新在 863 天前。 近期的大部分工作由 1 位贡献者完成。

16
总分 / 100
危急

软件健康指数

指标归入加权类别,统一采用 1–100 量表。总体分先取类别加权平均,再依据公开记录的分布进行校准,使各等级具有百分位含义;当公开证据触发高风险司法辖区政策时,评级会按政策调整,并设置 34(存在风险)的上限。

16
卓越93-100公开记录中的最高层级(约前 5%);基本满足所有检验标准
优秀80-92各方面均表现强劲;仅有少量不足
良好65-79健康;不足之处有限且可控
中等50-64可接受,但存在明显不足;建议进行审查
薄弱35-49多个领域存在实质性薄弱环节
存在风险20-34存在重大薄弱环节;采用时应保持审慎
危急1-19问题严重(项目被弃置、仅有单一维护者、缺乏基本工程规范)
活力社区与采用可持续性与治理工程质量安全AI 就绪度

评分画像

每条轴代表一个类别。形状比平均值更重要——健康的对象会填满整个图形,而“一峰一谷”式画像意味着某一维度的优势正掩盖另一维度的风险。

加权总体分 33 经校准后在公布的指数量表上为 27(记录校准 2026-08-02)。

所有权

1,290 关注者1,515 个公开仓库始于 2010年9月

该仓库由组织支持——共同承担、可问责的托管责任,可延续于任何单一维护者之后。

按类别列示的指标

活力

项目是否仍有生命——是否仍在编写代码,是否仍在发布版本?

15危急 · 占总体的 21%
评分方式
0/36推送新近度 — 最近一次推送于 863 天前
0/36提交节奏 — 52 周中有 0 周有提交
0/18提交量 — 最近一年 0 次提交
0/10OpenSSF Scorecard:Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
所用输入
commits_last_year0
human_commit_share1
days_since_last_push863
active_weeks_last_year0

发布纪律

36薄弱
评分方式
27/27有发布版本 — 已发布 2 个发布版本
0/36发布时效 — 最近一次发布版本于 2,637 天前
5.4/27发布节奏 — 约每 640.3 天发布一次
0/10OpenSSF Scorecard:Signed-Releases — 无数据
所用输入
releases_count2
latest_release_tagv0.2.0
releases_from_tags
days_since_latest_release2,637
mean_days_between_releases640.3
已排除计分(无数据或不适用):OpenSSF Scorecard:Signed-Releases。 其余权重已重新归一化。

社区与采用

项目是否拥有用户、下载量与关注度,并具备欢迎贡献者参与的配置?

63中等 · 占总体的 17%
评分方式
37.8/60星标 — 214 个星标
16.7/25复刻 — 103 个复刻
6.8/15关注者 — 18 位关注者
所用输入
forks103
stars214
watchers18
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

社区健康

65良好
评分方式
22.5/22.5README
22.5/22.5许可证 — 可识别的许可证(GPL-3.0)
0/18CONTRIBUTING 指南
13.5/13.5行为准则
0/7.2议题模板
0/6.3PR 模板
所用输入
has_readme
has_license
readme_badges
has_contributing
has_issue_template
has_code_of_conduct
readme_badge_services
has_pull_request_template

可持续性与治理

项目能否在其成员之外延续——巴士系数、响应能力、由谁支持,以及软件包的维护状况?

39薄弱 · 占总体的 23%
评分方式
9/54巴士系数 — 1 位贡献者贡献了半数提交
6.5/22.5提交分布 — 头号贡献者编写了 71% 的提交
2.7/13.5贡献者广度 — 2 位贡献者
10/10OpenSSF Scorecard:Contributors — project has 3 contributing companies or organizations -- score normalized to 10
所用输入
bus_factor1
contributors_sampled2
top_contributor_share0.709
评分方式
12.7/42议题解决 — 30% 的议题已关闭
0/30PR 接受 — 已裁定的 PR 中 0/6 已合并
0/13Newcomer PR acceptance — 30 天内没有首次贡献者的 PR 得到裁决
0/15OpenSSF Scorecard:Code-Review — Found 0/30 approved changesets -- score normalized to 0
所用输入
merged_prs0
open_issues97
closed_issues42
prs_merged_7d
prs_decided_7d
prs_merged_30d
prs_decided_30d
issue_closed_ratio0.302
closed_unmerged_prs6
first_time_authors_30d
first_time_prs_merged_30d
first_time_prs_decided_30d
已排除计分(无数据或不适用):newcomer_pr_acceptance。 其余权重已重新归一化。
评分方式
30/30所有权背书 — 组织持有
0/20已验证域名
22.4/25所有者影响力 — broadinstitute 有 1,290 位关注者
25/25既往记录 — 1,515 个公开仓库,账户约 15 年
所用输入
followers1,290
owner_typeOrganization
is_verified
owner_loginbroadinstitute
public_repos1,515
account_age_days5,804

工程质量

基础的工程与文档实践是否到位?

25存在风险 · 占总体的 19%
评分方式
0/24CI 工作流
0/24存在测试
0/16Linter 配置
0/9.6Pre-commit 钩子
0/6.4.editorconfig
0/20OpenSSF Scorecard:CI-Tests — 无数据
所用输入
has_ci
has_tests
has_editorconfig
has_linter_config
has_precommit_config
已排除计分(无数据或不适用):OpenSSF Scorecard:CI-Tests。 其余权重已重新归一化。

文档

60中等
评分方式
30/30README
0/25文档目录
0/15文档 / 主页站点
10/10仓库描述
10/10主题标签 — 3 个主题标签
10/10Wiki
所用输入
topicscopy-number, low-coverage-sequencing, cell-free-dna
has_wiki
homepage
has_readme
has_docs_dir
has_description

安全

可见的安全与供应链实践是否稳固,且不存在未解决的高风险司法辖区暴露?

30存在风险 · 占总体的 16%

安全态势

30存在风险
评分方式
7.5/7.5Binary-Artifacts — no binaries found in the repo
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — 无数据
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 3 contributing companies or organizations -- score normalized to 10
0/10Dangerous-Workflow — 无数据
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5许可证 — license file detected
0/7.5Maintained — 0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
0/5Packaging — 无数据
0/5Pinned-Dependencies — 无数据
0/5SAST — no SAST tool detected
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — 无数据
0/7.5Token-Permissions — 无数据
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
所用输入
sourceopenssf_scorecard
checks_evaluated12
scorecard_versionv5.5.0
checks_inconclusive6
scorecard_aggregate3
已排除计分(无数据或不适用):ci_tests, dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions。 其余权重已重新归一化。

AI 就绪度

该仓库在多大程度上具备与 AI 编码代理协同开发与维护的条件?权重刻意设小(4%):代理工具链是一项真实的维护信号,但完全不具备的仓库仍可达到 100/100。

5危急 · 占总体的 4%
评分方式
0/45代理指令 — 没有 CLAUDE.md / AGENTS.md / 编辑器规则
0/15机器可读文档(llms.txt)
12.3/40可读的提交历史 — 100 次人类提交中有 23 次说明了意图(结构化标题或解释性正文)
所用输入
has_llms_txt
legible_history_share0.23
agent_instruction_files
agent_instruction_max_bytes
评分方式
0/18一条命令的引导启动
0/22自动化测试
0/11Lint / 格式化配置
0/11静态类型检查
0/10可复现环境
0/10已体现的代理实践 — 最近 100 次提交中没有代理编写的提交
0/8自动化维护 — 未观察到自动依赖更新
0/10OpenSSF Scorecard:Pinned-Dependencies — 无数据
所用输入
has_nix
has_tests
lockfiles
has_dockerfile
typed_language
bootstrap_files
has_devcontainer
has_linter_config
typecheck_configs
agent_commit_share0
toolchain_manifests
dependency_bot_commit_share0
已排除计分(无数据或不适用):OpenSSF Scorecard:Pinned-Dependencies。 其余权重已重新归一化。
评分方式
0/45可类型检查的代码 — R,未配置类型检查
0/55可控的文件大小 — 未检测到源文件
所用输入
primary_languageR
largest_source_bytes
source_files_sampled0
oversized_source_files0
已排除计分(无数据或不适用):可控的文件大小。 其余权重已重新归一化。

关键数据

214GitHub 星标
2贡献者
0最近 12 个月提交数
863距最近推送天数
2发布版本数
1巴士系数(bus factor)
97开放议题
软件包生态系统数

数据采集警告

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token
  • GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository

更多细节

Star 与 Fork 历史 0 ★ / 103 ⇿
0Star
103Fork
1发布

每颗 star 和每个 fork 的添加时间,来自 GitHub 并按天汇总。累计增长位于其构成来源——每日新增——的正上方,二者可相互对照:稳定的自然增长与短暂的突增形态截然不同。当这一差别可被衡量时,它会作为增长真实性予以报告。

0204060801008822017-112022-032026-07
主版本 0次版本 1修订 0

每个点涵盖 8 天。

OpenSSF Scorecard 3.0 / 10
3.0综合

来自开源项目 OpenSSF Scorecard 的独立、工具无关的安全评估。每项检查奖励的是安全实践本身,而非特定供应商的工具。Scorecard 无法判定的检查项标记为 不适用,并从安全评分中剔除(绝不按零分计)。Scorecard v5.5.0 · 2026-08-01 12:19 UTC

10Binary-Artifactsno binaries found in the repo
0Branch-Protectionbranch protection not enabled on development/release branches
不适用CI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
10Contributorsproject has 3 contributing companies or organizations -- score normalized to 10
不适用Dangerous-Workflowno workflows found
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
0Maintained0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0
不适用Packagingpackaging workflow not detected
不适用Pinned-Dependenciesno dependencies found
0SASTno SAST tool detected
0Security-Policysecurity policy file not detected
不适用Signed-Releasesno releases found
不适用Token-PermissionsNo tokens found
10Vulnerabilities0 existing vulnerabilities detected
全部依赖 未采集

本报告未能采集到解析后的依赖集合:GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository

原始 JSON 报告 机器可读
{
  "data": {
    "repo": {
      "topics": [
        "copy-number",
        "low-coverage-sequencing",
        "cell-free-dna"
      ],
      "is_fork": false,
      "size_kb": 11270,
      "has_wiki": true,
      "homepage": null,
      "languages": {
        "R": 104262,
        "Shell": 608
      },
      "pushed_at": "2024-03-20T13:29:09Z",
      "created_at": "2017-01-06T16:47:46Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-18T12:48:24Z",
      "description": "Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "GPL-3.0",
      "default_branch": "master",
      "license_spdx_raw": "GPL-3.0",
      "primary_language": "R",
      "significant_languages": [
        "R"
      ]
    },
    "owner": {
      "blog": "http://www.broadinstitute.org/",
      "name": "Broad Institute",
      "type": "Organization",
      "login": "broadinstitute",
      "company": null,
      "location": "Cambridge, MA",
      "followers": 1290,
      "avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
      "created_at": "2010-09-09T16:37:46Z",
      "is_verified": null,
      "public_repos": 1515,
      "account_age_days": 5804
    },
    "license": {
      "state": "standard",
      "spdx_id": "GPL-3.0",
      "raw_spdx": "GPL-3.0",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v0.2.0",
          "kind": "minor",
          "published_at": "2019-05-13T00:51:56Z"
        },
        {
          "tag": "v0.1.0",
          "kind": "minor",
          "published_at": "2017-08-10T17:30:49Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
          "body": "Fixes #68 where the corrected copy number for each bin is tumor-fraction-corrected even for low tumor fraction samples. correctIntegerCN now makes use of the argument \"minPurityToCorrect\" for bin-level correction (default set to 0.1 tumor fraction). The plotting, which uses the corrected copy number, should now be fixed.",
          "is_bot": false,
          "headline": "correct CN based on min tumor fraction",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-12-19T06:26:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "47ce8db4d81ada2d3ce09280661d1240f3dcd530",
          "body": null,
          "is_bot": false,
          "headline": "fix bug when not estimating cell prev",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-08-22T23:11:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6cd47551981c9e6667b0fc35df3dbc6502432a1e",
          "body": null,
          "is_bot": false,
          "headline": "update plotting of corrected integer CN",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-08-12T23:03:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b61ee8f77088486e7fdd553b9ab45e5106cdb267",
          "body": "In  getGenomeWidePositions, chrs arg is converted to character vector to avoid problem when finding chromosome positions\nFixes #58",
          "is_bot": false,
          "headline": "fix error in getGenomeWidePositions",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-24T19:05:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c9f4378e2749b744719dd3b3fc34fbb7a7bca1dd",
          "body": "Avoid error for genomeWide plot of single chromosome - fixes #57\nModified runIchorCNA.R to not coerce list into GRangesList; require GenomicRanges v1.36.0; might help with #58.\nNew hg38 Panel of Normal files with GRanges version (replaces deprecated RangedData versions)",
          "is_bot": false,
          "headline": "fix plotting errors; update panel of normals",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-23T06:16:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bc89d52dc5a02e77094e5ca770c691494aca0911",
          "body": null,
          "is_bot": false,
          "headline": "convert to GRanges for PON script",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-19T18:25:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "569327b76c8c43ab4984efd96e5f47fe21eb74f5",
          "body": null,
          "is_bot": false,
          "headline": "add getSeqInfo to NAMESPACE; fix #56",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-17T17:07:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c91f097f5a8d5e313943cc06690c7bda39d035f",
          "body": null,
          "is_bot": false,
          "headline": "bug fix - typo for params",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-12T23:11:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d1725c811deef170c7f35b431f2a33824eae1030",
          "body": "Enhancement (issue #41): High level amplifications are corrected to represent the purity/ploidy correct integer CN. These are provided as 3 additional columns in cna.seg, seg.txt.\n (Corrected_Copy_Number, Corrected_Call, logR_Copy_Number)\nPlotting: Handles seqinfo input to determine the actual lengt\n[…]\ntered_median.rd) is now a GRanges object. Also fixed issue with TargetedSequences object. #50 #55\nSnakemake: included additional user options for how much subclonal fraction to tolerate for solutions.",
          "is_bot": false,
          "headline": "bug fixes, updates, enhancements",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-12T22:51:41Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "1e39f1b06949bbc2abe16aa0c4f177d52e990c04",
          "body": null,
          "is_bot": false,
          "headline": "typo/bugs #54; add getSeqInfo",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-07-08T16:37:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e271b7665a0b83604cbbfe09252d09aab418982e",
          "body": null,
          "is_bot": false,
          "headline": "fix ichorCNA-package.Rd during install #52",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-27T23:19:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6ff8f0e05509478d03d118998f656d38a849f6d7",
          "body": null,
          "is_bot": false,
          "headline": "Merge branch 'master' of github.com:broadinstitute/ichorCNA",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-27T20:09:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "03f353f9969573f5066ff632cb3dfbb171afced2",
          "body": null,
          "is_bot": false,
          "headline": "update contacts, version",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-27T20:04:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d91730cd728dffeee62ea0171189d2fbcb7215e2",
          "body": null,
          "is_bot": false,
          "headline": "move biocViews below depends",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-26T20:07:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "00aa1e1055508e83f5183eb43b35910b7e5df3e9",
          "body": null,
          "is_bot": false,
          "headline": "add biocViews",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-26T20:05:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b32b21519c150bd8e09258ad3896cba4550e41cc",
          "body": "include wigToGRanges in list of public functions. Address issue #50",
          "is_bot": false,
          "headline": "expose wigToGRanges",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-06-05T20:02:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6ede008f2b2ce15f9dc67ff9cf122c399b5c13ee",
          "body": null,
          "is_bot": false,
          "headline": "user specify chrY coverage cutoff in snakemake",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-05-30T00:57:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "414f3c1a8c32fbe4236293b339710186513aa03d",
          "body": "The deprecation of RangedData, which was the main data structure used by HMMcopy, required the transition of the code to use GRanges (GenomicRanges package). A new function \"wigToGRanges\" has been added and other changes have been made throughout the code to support GRanges instead of RangedData. Addresses #50\nAlso, added the ability for users to specify in the snakemake pipeline the fraction of chrY coverage cutoff to determine male vs female.",
          "is_bot": false,
          "headline": "switched to GRanges",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-05-30T00:57:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "99801a51fa2580c3b5ca38a4e9f41b94b364a641",
          "body": null,
          "is_bot": false,
          "headline": "add ichorCNA_genomeStyle to snakemake config.yaml",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-02-13T18:28:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6d7e1563dfe8bbb62de4e2a848a6d458ae0e3b05",
          "body": "For slurm:\nsnakemake -s ichorCNA.snakefile --cluster-config config/cluster_slurm.yaml --cluster \"sbatch -p {cluster.partition} --mem={cluster.mem} -t {cluster.time} -c {cluster.ncpus} -n {cluster.ntasks} -o {cluster.output}\" -j 50\n\nFor qsub:\nsnakemake -s ichorCNA.snakefile --jobscript config/cluster_qsub.sh --cluster-config config/cluster_qsub.yaml --cluster-sync \"qsub -l h_vmem={cluster.h_vmem},h_rt={cluster.h_rt} -pe {cluster.pe} -binding {cluster.binding}\" -j 50",
          "is_bot": false,
          "headline": "updated cluster usage",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-02-06T18:50:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c79efe39dc75734517adbc673576bf5d980b6e5b",
          "body": "Fixes #43 where chrX is not properly normalize for samples with UCSC chromosome names",
          "is_bot": false,
          "headline": "fix bug that doesn't properly normalize chrX to relative log ratios",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-01-18T20:47:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a0c2192577e81b68918baa7411562a433e694ce7",
          "body": "Address an error in later versions of snakemake that complains about multiple output paths being a child of another output.",
          "is_bot": false,
          "headline": "update for compatibility with snakemake v5+",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-01-15T23:29:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "24ade696ce8798cffa6ffd75b9f9935ab9706053",
          "body": "The previous files had many bins that had scores < 0.9. This may be due to the use of different kmer read lengths.\nThis commit addresses Issue #22\nThe ones included in this commit were generated using the following:\n\nreference=\"GRCh38/Homo_sapiens_assembly38.fasta\";\nidxpref=\"GRCh38_index\";\npref=\"GRC\n[…]\nn/mapCounter -w 500000 -c chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY ${pref}_${kmer}bp.bw > map_hg38_500kb.wig",
          "is_bot": false,
          "headline": "replaced mappability files for hg38 (1Mb and 500kb)",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-01-12T05:48:17Z",
          "body_truncated": true,
          "is_coding_agent": false
        },
        {
          "oid": "4b45be03e37e4db1c28c019e3e8adbb41cabd11f",
          "body": null,
          "is_bot": false,
          "headline": "allow user specified chrX log ratio threshold",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2019-01-12T05:39:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fe7aa5c4a4007eeca6b99a67f104981c637d512b",
          "body": null,
          "is_bot": false,
          "headline": "Update badge from travis-ci.org to travis-ci.com",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2019-01-09T13:54:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4260c64e3be6d36772aa253b4ef8bc306a63eb26",
          "body": null,
          "is_bot": false,
          "headline": "cytoband coords for hg38",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-09-26T20:42:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1d54a1fd4d8bd88aa0217791482be65bfe599db5",
          "body": null,
          "is_bot": false,
          "headline": "hg19 gc map files for 10kb/50kb #35 [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-08-10T19:11:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f2dc65795ac32887aa9ff9152cabf62f96f6ea3e",
          "body": null,
          "is_bot": false,
          "headline": "read_counter use binSize wildcard in log [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-08-03T00:45:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ccd357fae6036d080cbedd16d323f30f0543322a",
          "body": null,
          "is_bot": false,
          "headline": "update for hg38 and chr naming style #10",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-08-01T21:25:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "108b0bb5d2c52da9f6b87bb06292cb3703da061f",
          "body": null,
          "is_bot": false,
          "headline": "fixes bug where genomeStyle was undefined",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2018-08-01T20:06:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "56ce289320420c59d3fc7d3c7c2b2209208b37a7",
          "body": null,
          "is_bot": false,
          "headline": "set chrNormalize to same as chrTrain #10",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-07-31T16:52:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5cb462303e24523d62323a9548b355103ce22f23",
          "body": null,
          "is_bot": false,
          "headline": "some changes to support hg38 #10",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-07-31T16:51:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8021afa5b72f34e8fce3c30efe0bcae9f735122d",
          "body": null,
          "is_bot": false,
          "headline": "Added additional bin sizes for hg38 wig files #10",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-07-10T21:06:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "92c8bd1e54a1221c55d590c27a91c994da62577a",
          "body": null,
          "is_bot": false,
          "headline": "intersects tumour_copy with panel before normalizing, fixes #24",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2018-05-11T20:42:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d56208baba59256689d44dd60e60aa79e60bd14b",
          "body": null,
          "is_bot": false,
          "headline": "now with mappability filter",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2018-05-11T19:25:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "760ce1e619f262dac82f1beee3b359b0f201de5e",
          "body": null,
          "is_bot": false,
          "headline": "hg38 mappability files; thanks to @leraman #22 [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-05-09T13:55:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "05519bf02d4ae6c949b89551152cb107f86fdcb2",
          "body": null,
          "is_bot": false,
          "headline": "fixes typo for #17",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2018-04-03T13:31:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c039a8367c61b5de8216d857539074e73b6d25da",
          "body": null,
          "is_bot": false,
          "headline": "add script to generate panel of normals #3",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2018-03-02T01:05:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "91264fdc739f519d68cff9a9c6a18f32e410e3ab",
          "body": null,
          "is_bot": false,
          "headline": "refactor code for plotting genomeWide_all_sols",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-01-14T17:17:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e5445828ce18dfc31f829082d7e44b846a6021e4",
          "body": null,
          "is_bot": false,
          "headline": "exclude NA bins in segmentation",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-01-14T17:16:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0dac48b84d69553f9332f58589100cd388fb6b78",
          "body": null,
          "is_bot": false,
          "headline": "fixed plotChrLine for plotSegs=F [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-01-14T17:16:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0fb0fb440c092450508797a5176e36581d9b9948",
          "body": null,
          "is_bot": false,
          "headline": "fix coordEnd bug",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-01-14T02:02:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3455e1ecbb0be10b6685af5faa6647a2b4b5c687",
          "body": null,
          "is_bot": false,
          "headline": "fix bug for EM of 1 iteration",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2018-01-14T02:01:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c1e41a84d52beb3faf53a2db80a14427fd95892c",
          "body": null,
          "is_bot": false,
          "headline": "fixes plotting bug",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-11-29T17:20:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3df135e248b033418d99971e469f23131943f615",
          "body": null,
          "is_bot": false,
          "headline": "added paper citation",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-11-12T01:10:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a202b202d89c7ea6ffe25e40f85713c863d4768f",
          "body": null,
          "is_bot": false,
          "headline": "added option to plot or not plot seg green lines",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-10-25T21:13:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7f77c626ff8bdac55ca239550afada4bddeafe57",
          "body": null,
          "is_bot": false,
          "headline": "added doc for config settings",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-10-25T21:13:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "807f63c975aa27802cfe729d4d065f2b169e9ea3",
          "body": null,
          "is_bot": false,
          "headline": "fixed bug for segmentData() when includeHOMD=TRUE",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-10-25T21:12:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6c9f64c7782fe140adcd1b01313dc8851a5b2b60",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-09-01T20:36:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21c22072f1c4579665853430f0c6dcb959bb0c52",
          "body": null,
          "is_bot": false,
          "headline": "reformatted centromere table [ci skip]",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-21T14:38:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c7847033d56970f744ed1bfe34a058263fe40a49",
          "body": null,
          "is_bot": false,
          "headline": "PoN realigned to hg38",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-21T14:36:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "88e541d07f45bfa96a3cab5a584d5bc5b6ae8ac3",
          "body": "…ams #1",
          "is_bot": false,
          "headline": "modifications to run with or without 'chr' contigs and hg38 aligned b…",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-21T14:35:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "05c7f1f5849d04ffc4199a8a5cbb1f85c644c9c4",
          "body": null,
          "is_bot": false,
          "headline": "added GC reference files for hg38 for #1 [ci skip]",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-15T16:52:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bc04fe4e62556035e95ccfbaab667ca10ad16bea",
          "body": null,
          "is_bot": false,
          "headline": "updated license [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-14T14:04:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0d065e16e04ae83158815267a50ed5dd7f1a6bc0",
          "body": null,
          "is_bot": false,
          "headline": "add hg38 centromere gap file for issue #1 [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-11T17:00:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "66f96a4910d0f45bbe5d7da92fa1299e0fc59ea8",
          "body": null,
          "is_bot": false,
          "headline": "added contact info [ci skip]",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-10T16:41:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4625844b52fce9c3bc2ef6dffbbc09a92cb7e0d9",
          "body": null,
          "is_bot": false,
          "headline": "Delete ichorCNA.Rnw",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-09T21:52:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4d72fbe772aa76b68f2e31db1e0c1f8972405c99",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-09T21:17:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "69fb1067e7a750c293bd53401e437869bde9bc38",
          "body": null,
          "is_bot": false,
          "headline": "Update .travis.yml",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-09T21:13:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "12d6e62386b960b1b4414d60e41867039e3e3ef4",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-08-09T21:06:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "127d9fb34db70aea38c3ae822790e941e4d52315",
          "body": null,
          "is_bot": false,
          "headline": "added travis image",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-09T20:48:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fa0ba7ed46fbf5e1dbff6f9b595918f02b23328",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-09T16:05:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "47f660aba5a4beb80a1c3ba4e7068d2968c5333a",
          "body": null,
          "is_bot": false,
          "headline": "update email contacts",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-08-09T16:03:50Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4813ff7518714d2a7fbd90a741fb8f69d75ad3af",
          "body": null,
          "is_bot": false,
          "headline": "fixes small bug where data points were shifted on genome wide plot",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-26T18:53:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1da39972e31d229a7ba178e06b50efd1213ebdf8",
          "body": null,
          "is_bot": false,
          "headline": "minor updates to main R script",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-26T18:34:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "503fdf8eadc59f17f16c6eec7e7ca3cdbbd448ce",
          "body": null,
          "is_bot": false,
          "headline": "plot solutions to single PDF, added loglik to plot",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-20T16:03:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1a7e74b7f7e4e6c23509899bddf8e872c4570062",
          "body": null,
          "is_bot": false,
          "headline": "default values arguments in help",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-17T20:19:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a054d0f74b010c9ce86613ce5df44047ee37836",
          "body": null,
          "is_bot": false,
          "headline": "Add example genome wide plot",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-14T19:26:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1be4710d28cf0aeea28d6d574666494efdf8a665",
          "body": null,
          "is_bot": false,
          "headline": "updated snakemake to accept gcwig and mapwig",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-14T19:15:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "279e467a24b8107f644bff8db5531bd1df998124",
          "body": null,
          "is_bot": false,
          "headline": "Update README.md",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-13T19:50:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f0480ee10bae70c0671a73c3f656932331f976bc",
          "body": null,
          "is_bot": false,
          "headline": "Create LICESNSE",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-13T19:46:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f8db030bd870e9d99c1cfe53f5201c1e21ba291a",
          "body": null,
          "is_bot": false,
          "headline": "delete license",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-13T19:40:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "15cf321cc6ca5f5d81b841ffe8293e2113aa1868",
          "body": null,
          "is_bot": false,
          "headline": "moved details to wiki",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-13T19:21:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9174c6e5d8606aa854d82f835634f0f0c1529167",
          "body": null,
          "is_bot": false,
          "headline": "move installation and usage to wiki",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-13T19:10:04Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "558a9b673767f11b29ded95a2dad9dc8a802d433",
          "body": null,
          "is_bot": false,
          "headline": "add gcwig mapwig arguments to snakemake",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-13T18:18:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "548b3cd188524f6a31c38db138ea54f0b3e249d3",
          "body": null,
          "is_bot": false,
          "headline": "gcwig and mapwig arguments",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-12T21:25:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0871da56384b37898872e3f3ae98d584dfd69afd",
          "body": null,
          "is_bot": false,
          "headline": "expose output params function",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-12T21:04:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "020b278a144d554da37e5dab28494197aec26182",
          "body": null,
          "is_bot": false,
          "headline": "updated imports in NAMESPACE",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-12T20:38:43Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "48f8407a905517813996e9776dc87de4194e8b5a",
          "body": null,
          "is_bot": false,
          "headline": "added citation",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-07-06T14:33:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d985dc3d683591549108a05cb5c37d01ff5141f2",
          "body": null,
          "is_bot": false,
          "headline": "fix build failures",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-07-03T15:51:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "339263c11bc02291781d333d029331d43d1324cb",
          "body": null,
          "is_bot": false,
          "headline": "create readme",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-21T19:03:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4dbe96c45ca6556284f86e30532c0ea4c2861064",
          "body": null,
          "is_bot": false,
          "headline": "added viktor to acknowledgments",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-21T18:59:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "49179ffd9fc0840a6a6e068e1c34e281fbe73d19",
          "body": null,
          "is_bot": false,
          "headline": "removed runIchorcna.R instructions",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-21T18:57:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "57290ade629c714f7e35ef1c807c5b46e69396aa",
          "body": null,
          "is_bot": false,
          "headline": "update readme with snakemake instructions",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-14T19:52:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "893598fca4a823563566dcbc53be707fa307580f",
          "body": null,
          "is_bot": false,
          "headline": "snakemake runs for ichor",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-14T16:31:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8fb9127730124f261aab37ec9c900bfc7dfa8987",
          "body": null,
          "is_bot": false,
          "headline": "exons arg can be None",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-14T16:30:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "95a13b43a5f20ebcea25018240b0af998267c78e",
          "body": null,
          "is_bot": false,
          "headline": "minor mods",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-06-14T15:21:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "37490cc2f9d793f234b1138aced81b834c5464c0",
          "body": null,
          "is_bot": false,
          "headline": "init commit of scripts dir with snakemake template",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-05-30T13:46:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5a5d9b4f37a3888f10156cd9c70f3a387f4f6581",
          "body": null,
          "is_bot": false,
          "headline": "init commit of travis.yml",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-05-30T13:46:38Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "6316bf9b1995be137362dfa9d38036cd3f534c4e",
          "body": null,
          "is_bot": false,
          "headline": "added R build/inst ignore files; updated Desc file",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-05-30T13:46:12Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "21011979b3f1c353972dda1d80a1ab50c0823439",
          "body": null,
          "is_bot": false,
          "headline": "merge multiSample branch",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-05-11T20:44:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e0b306b07ec2b09a04dbd7c3a5b19fac6b0df234",
          "body": null,
          "is_bot": false,
          "headline": "bringing back multisample",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-05-11T20:35:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3fcef3f66068db96b33d0ec70ca45040f07db9dd",
          "body": null,
          "is_bot": false,
          "headline": "added second time point wig",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-05-08T14:27:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8bf4f49dd5f2e2b11b1c9bccb792cf88ff47025a",
          "body": null,
          "is_bot": false,
          "headline": "progress on vignette",
          "author_name": "Justin Rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-05-08T14:26:08Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "de30bfe33c779fde96b16088ff370acada4fb140",
          "body": null,
          "is_bot": false,
          "headline": "added missing function argument",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-04-19T19:21:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1c9c9e0116b527324a14807d4c9373bfdb7bbbcf",
          "body": null,
          "is_bot": false,
          "headline": "typo",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-04-19T18:10:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a461d8f0c35b764807586d42ffaa6cb4c9fa868a",
          "body": null,
          "is_bot": false,
          "headline": "added plotting params for opening device, specifying title",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-04-19T15:29:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4b3eeb4ef5e1bb919b3e51ee8152f1b5b463b7d4",
          "body": null,
          "is_bot": false,
          "headline": "minor change to plotting code",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-04-18T21:02:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5c929cd11e0ef6b6e0a03bfb768b6149ae5402e4",
          "body": null,
          "is_bot": false,
          "headline": "new files, updated plotting function",
          "author_name": "rhoades",
          "author_login": "jurhoades",
          "committed_at": "2017-04-18T18:32:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "67d9a32929265857989b5725bf4301766b1c695e",
          "body": null,
          "is_bot": false,
          "headline": "adjust chromosome plots based on ploidy estimate",
          "author_name": "Gavin Ha",
          "author_login": "gavinha",
          "committed_at": "2017-03-29T15:52:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 2,
      "commits_last_year": 0,
      "latest_release_at": "2019-05-13T00:51:56Z",
      "latest_release_tag": "v0.2.0",
      "releases_from_tags": false,
      "days_since_last_push": 863,
      "active_weeks_last_year": 0,
      "days_since_latest_release": 2637,
      "mean_days_between_releases": 640.3
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 50,
      "has_issue_template": false,
      "has_code_of_conduct": true,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": []
    },
    "popularity": {
      "forks": 103,
      "stars": 214,
      "watchers": 18,
      "fork_history": {
        "days": [
          {
            "date": "2017-11-02",
            "count": 1
          },
          {
            "date": "2017-12-19",
            "count": 1
          },
          {
            "date": "2018-03-08",
            "count": 1
          },
          {
            "date": "2018-03-27",
            "count": 1
          },
          {
            "date": "2018-03-28",
            "count": 1
          },
          {
            "date": "2018-05-17",
            "count": 1
          },
          {
            "date": "2018-06-27",
            "count": 1
          },
          {
            "date": "2018-07-13",
            "count": 1
          },
          {
            "date": "2018-08-07",
            "count": 1
          },
          {
            "date": "2018-08-09",
            "count": 1
          },
          {
            "date": "2018-08-26",
            "count": 1
          },
          {
            "date": "2018-08-28",
            "count": 1
          },
          {
            "date": "2018-10-25",
            "count": 1
          },
          {
            "date": "2018-12-03",
            "count": 1
          },
          {
            "date": "2019-03-15",
            "count": 2
          },
          {
            "date": "2019-04-04",
            "count": 1
          },
          {
            "date": "2019-04-08",
            "count": 1
          },
          {
            "date": "2019-04-11",
            "count": 1
          },
          {
            "date": "2019-04-17",
            "count": 1
          },
          {
            "date": "2019-05-02",
            "count": 1
          },
          {
            "date": "2019-05-29",
            "count": 1
          },
          {
            "date": "2019-07-15",
            "count": 1
          },
          {
            "date": "2019-12-02",
            "count": 1
          },
          {
            "date": "2019-12-06",
            "count": 1
          },
          {
            "date": "2020-01-15",
            "count": 1
          },
          {
            "date": "2020-02-05",
            "count": 1
          },
          {
            "date": "2020-03-25",
            "count": 1
          },
          {
            "date": "2020-04-21",
            "count": 1
          },
          {
            "date": "2020-04-23",
            "count": 1
          },
          {
            "date": "2020-04-28",
            "count": 1
          },
          {
            "date": "2020-05-28",
            "count": 1
          },
          {
            "date": "2020-07-28",
            "count": 1
          },
          {
            "date": "2020-08-17",
            "count": 1
          },
          {
            "date": "2020-08-31",
            "count": 1
          },
          {
            "date": "2020-09-22",
            "count": 1
          },
          {
            "date": "2020-10-24",
            "count": 1
          },
          {
            "date": "2020-11-19",
            "count": 1
          },
          {
            "date": "2020-11-29",
            "count": 1
          },
          {
            "date": "2021-01-06",
            "count": 1
          },
          {
            "date": "2021-01-20",
            "count": 1
          },
          {
            "date": "2021-01-26",
            "count": 1
          },
          {
            "date": "2021-02-08",
            "count": 1
          },
          {
            "date": "2021-04-12",
            "count": 1
          },
          {
            "date": "2021-04-14",
            "count": 1
          },
          {
            "date": "2021-04-24",
            "count": 1
          },
          {
            "date": "2021-05-19",
            "count": 1
          },
          {
            "date": "2021-09-21",
            "count": 1
          },
          {
            "date": "2021-10-14",
            "count": 1
          },
          {
            "date": "2021-11-15",
            "count": 1
          },
          {
            "date": "2021-11-24",
            "count": 1
          },
          {
            "date": "2022-02-24",
            "count": 1
          },
          {
            "date": "2022-04-16",
            "count": 1
          },
          {
            "date": "2022-08-08",
            "count": 1
          },
          {
            "date": "2022-09-20",
            "count": 1
          },
          {
            "date": "2022-09-21",
            "count": 1
          },
          {
            "date": "2022-10-18",
            "count": 1
          },
          {
            "date": "2022-11-14",
            "count": 1
          },
          {
            "date": "2023-01-04",
            "count": 1
          },
          {
            "date": "2023-01-26",
            "count": 1
          },
          {
            "date": "2023-01-30",
            "count": 1
          },
          {
            "date": "2023-02-10",
            "count": 1
          },
          {
            "date": "2023-02-25",
            "count": 1
          },
          {
            "date": "2023-04-19",
            "count": 1
          },
          {
            "date": "2023-05-29",
            "count": 1
          },
          {
            "date": "2023-07-16",
            "count": 1
          },
          {
            "date": "2023-12-13",
            "count": 1
          },
          {
            "date": "2023-12-25",
            "count": 1
          },
          {
            "date": "2024-02-08",
            "count": 1
          },
          {
            "date": "2024-02-25",
            "count": 1
          },
          {
            "date": "2024-03-01",
            "count": 1
          },
          {
            "date": "2024-03-15",
            "count": 1
          },
          {
            "date": "2024-06-05",
            "count": 1
          },
          {
            "date": "2024-06-21",
            "count": 1
          },
          {
            "date": "2024-07-09",
            "count": 1
          },
          {
            "date": "2024-11-30",
            "count": 1
          },
          {
            "date": "2025-07-16",
            "count": 1
          },
          {
            "date": "2025-09-05",
            "count": 1
          },
          {
            "date": "2025-09-26",
            "count": 1
          },
          {
            "date": "2025-10-02",
            "count": 1
          },
          {
            "date": "2025-12-09",
            "count": 1
          },
          {
            "date": "2026-03-05",
            "count": 1
          },
          {
            "date": "2026-03-20",
            "count": 1
          },
          {
            "date": "2026-04-24",
            "count": 1
          },
          {
            "date": "2026-05-27",
            "count": 1
          },
          {
            "date": "2026-05-28",
            "count": 1
          },
          {
            "date": "2026-06-09",
            "count": 1
          },
          {
            "date": "2026-07-11",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 88,
        "total_forks": 103
      },
      "star_history": null,
      "open_issues_and_prs": 102
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": null,
      "source_files_sampled": 0,
      "oversized_source_files": 0,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [],
      "advisories": {
        "error": null,
        "scope": null,
        "source": null,
        "findings": [],
        "collected": false,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 0,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [],
      "dependencies": [],
      "all_dependencies": {
        "error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
        "source": null,
        "packages": [],
        "collected": false,
        "truncated": false,
        "total_count": null,
        "direct_count": null,
        "indirect_count": null
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 5,
        "merged_prs": 0,
        "open_issues": 97,
        "closed_ratio": 0.302,
        "closed_issues": 42,
        "closed_unmerged_prs": 6
      },
      "bus_factor": 1,
      "bot_contributors": 0,
      "top_contributors": [
        {
          "type": "User",
          "login": "gavinha",
          "commits": 78,
          "avatar_url": "https://avatars.githubusercontent.com/u/9221688?v=4"
        },
        {
          "type": "User",
          "login": "jurhoades",
          "commits": 32,
          "avatar_url": "https://avatars.githubusercontent.com/u/15793246?v=4"
        }
      ],
      "contributors_sampled": 2,
      "top_contributor_share": 0.709
    },
    "quality_signals": {
      "has_ci": false,
      "has_tests": false,
      "ci_workflows": [],
      "has_docs_dir": false,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 0,
            "reason": "branch protection not enabled on development/release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": null,
            "reason": "no pull request found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/30 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 3 contributing companies or organizations -- score normalized to 10",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": null,
            "reason": "no workflows found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 0,
            "reason": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": null,
            "reason": "no dependencies found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "no SAST tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": null,
            "reason": "No tokens found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
        "ran_at": "2026-08-01T12:19:40Z",
        "aggregate_score": 3,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": null,
      "oldest_open_prs": [
        {
          "number": 38,
          "created_at": "2018-08-28T19:36:47Z",
          "last_comment_at": "2021-02-02T03:38:44Z",
          "last_comment_author": "ryanrichholt"
        },
        {
          "number": 91,
          "created_at": "2021-01-27T15:28:35Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 106,
          "created_at": "2021-11-24T17:38:06Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 130,
          "created_at": "2024-02-25T14:05:32Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 145,
          "created_at": "2025-12-09T21:16:58Z",
          "last_comment_at": null,
          "last_comment_author": null
        }
      ],
      "last_merged_pr_at": null,
      "ci_last_conclusion": null,
      "oldest_open_issues": [
        {
          "number": 10,
          "created_at": "2017-12-11T17:47:48Z",
          "last_comment_at": "2018-08-01T09:39:06Z",
          "last_comment_author": "enmce"
        },
        {
          "number": 11,
          "created_at": "2017-12-14T11:50:06Z",
          "last_comment_at": "2022-05-24T20:21:38Z",
          "last_comment_author": "EvoMedLab"
        },
        {
          "number": 13,
          "created_at": "2018-03-06T18:02:59Z",
          "last_comment_at": "2023-12-08T14:15:02Z",
          "last_comment_author": "ilykos"
        },
        {
          "number": 15,
          "created_at": "2018-03-27T07:14:42Z",
          "last_comment_at": "2018-05-18T12:55:15Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 16,
          "created_at": "2018-03-27T09:21:26Z",
          "last_comment_at": "2018-04-11T09:14:28Z",
          "last_comment_author": "thestarocean"
        },
        {
          "number": 18,
          "created_at": "2018-04-11T13:47:50Z",
          "last_comment_at": "2018-04-12T15:28:36Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 20,
          "created_at": "2018-04-18T09:56:38Z",
          "last_comment_at": "2018-04-19T14:03:14Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 21,
          "created_at": "2018-04-19T11:54:52Z",
          "last_comment_at": "2018-04-19T18:42:32Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 23,
          "created_at": "2018-04-24T03:27:47Z",
          "last_comment_at": "2018-04-27T10:08:22Z",
          "last_comment_author": "thestarocean"
        },
        {
          "number": 24,
          "created_at": "2018-05-04T21:12:14Z",
          "last_comment_at": "2018-05-11T18:59:31Z",
          "last_comment_author": "2075222"
        },
        {
          "number": 25,
          "created_at": "2018-06-05T20:02:07Z",
          "last_comment_at": "2018-06-15T00:11:35Z",
          "last_comment_author": "andreykoch"
        },
        {
          "number": 26,
          "created_at": "2018-06-13T03:47:20Z",
          "last_comment_at": "2018-06-13T13:26:34Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 28,
          "created_at": "2018-07-09T07:57:56Z",
          "last_comment_at": "2018-12-10T12:43:13Z",
          "last_comment_author": "seedgeorge"
        },
        {
          "number": 30,
          "created_at": "2018-08-04T22:03:50Z",
          "last_comment_at": "2023-09-29T20:09:21Z",
          "last_comment_author": "ahstram"
        },
        {
          "number": 31,
          "created_at": "2018-08-07T07:56:01Z",
          "last_comment_at": "2018-08-08T15:48:33Z",
          "last_comment_author": "gavinha"
        },
        {
          "number": 33,
          "created_at": "2018-08-07T21:49:11Z",
          "last_comment_at": "2021-02-02T02:26:09Z",
          "last_comment_author": "ju-cheng"
        },
        {
          "number": 35,
          "created_at": "2018-08-09T23:43:57Z",
          "last_comment_at": "2023-11-27T12:09:35Z",
          "last_comment_author": "haojam"
        },
        {
          "number": 37,
          "created_at": "2018-08-14T22:15:14Z",
          "last_comment_at": null,
          "last_comment_author": null
        },
        {
          "number": 39,
          "created_at": "2018-08-29T23:51:47Z",
          "last_comment_at": "2018-09-04T16:47:36Z",
          "last_comment_author": "sengoku93"
        },
        {
          "number": 42,
          "created_at": "2018-09-05T14:37:36Z",
          "last_comment_at": "2018-09-17T23:16:21Z",
          "last_comment_author": "gavinha"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/broadinstitute/ichorCNA",
    "host": "github.com",
    "name": "ichorCNA",
    "owner": "broadinstitute"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "critical",
      "name": "Overall health",
      "note": "The weighted overall 33 is calibrated to 27 on the published index scale (record calibration 2026-08-02). Abandonment Policy applies a 60% multiplier to weighted overall health and gives it a ceiling of 34.",
      "notes": [
        {
          "code": "overall_calibration",
          "params": {
            "raw": 33,
            "calibrated": 27,
            "calibration": "2026-08-02"
          }
        },
        {
          "code": "abandonment_overall_adjustment",
          "params": {
            "cap": 34,
            "pct": 60
          }
        }
      ],
      "value": 16,
      "inputs": {
        "security": 30,
        "vitality": 15,
        "community": 63,
        "governance": 39,
        "calibration": "2026-08-02",
        "engineering": 25,
        "ai_readiness": 5,
        "abandonment_cap": 34,
        "abandonment_state": "likely_abandoned",
        "weighted_overall_raw": 33,
        "abandonment_multiplier": 60,
        "weighted_overall_before_abandonment": 27,
        "overall_after_abandonment_multiplier": 16
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "critical",
        "name": "Vitality",
        "value": 15,
        "weight": 0.21,
        "metrics": [
          {
            "key": "development_activity",
            "band": "critical",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 1,
            "inputs": {
              "commits_last_year": 0,
              "human_commit_share": 1,
              "days_since_last_push": 863,
              "active_weeks_last_year": 0
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 863 days ago",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 863
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "0/52 weeks with commits",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 0
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "0 commits in the last year",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 0
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "weak",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 36,
            "inputs": {
              "releases_count": 2,
              "latest_release_tag": "v0.2.0",
              "releases_from_tags": false,
              "days_since_latest_release": 2637,
              "mean_days_between_releases": 640.3
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "2 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 2637 days ago",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 2637
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~640.3 days",
                "points": 5.4,
                "status": "partial",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 640.3
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "moderate",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 60,
            "inputs": {
              "cap": 34,
              "state": "likely_abandoned",
              "guards": [],
              "signals": [
                "unanswered_contributions",
                "issue_rot",
                "release_stall",
                "scorecard_unmaintained"
              ],
              "red_flag": true,
              "multiplier_pct": 60,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": 5,
              "unanswered_open_issues": 13,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 2418,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "no human commit for 2418 days; 4 unmet obligation(s): pull requests unanswered, issues unanswered, releases stalled, Scorecard reports it unmaintained",
                "points": 60,
                "status": "partial",
                "details": [
                  {
                    "code": "abandonment_flagged",
                    "params": {
                      "days": 2418,
                      "count": 4,
                      "signals": "pull requests unanswered, issues unanswered, releases stalled, Scorecard reports it unmaintained"
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "moderate",
        "name": "Community & Adoption",
        "value": 63,
        "weight": 0.17,
        "metrics": [
          {
            "key": "popularity",
            "band": "moderate",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 61,
            "inputs": {
              "forks": 103,
              "stars": 214,
              "watchers": 18,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "214 stars",
                "points": 37.8,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 214
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "103 forks",
                "points": 16.7,
                "status": "partial",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 103
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "18 watchers",
                "points": 6.8,
                "status": "partial",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 18
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "good",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 65,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "readme_badges": null,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": true,
              "readme_badge_services": [],
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (GPL-3.0)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "GPL-3.0"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 13.5,
                "status": "met",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "weak",
        "name": "Sustainability & Governance",
        "value": 39,
        "weight": 0.23,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "at_risk",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 28,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 2,
              "top_contributor_share": 0.709
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 71% of commits",
                "points": 6.5,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 71
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "2 contributors",
                "points": 2.7,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 3 contributing companies or organizations -- score normalized to 10",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "critical",
            "name": "Issue & PR responsiveness",
            "note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "newcomer_pr_acceptance"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 15,
            "inputs": {
              "merged_prs": 0,
              "open_issues": 97,
              "closed_issues": 42,
              "prs_merged_7d": null,
              "prs_decided_7d": null,
              "prs_merged_30d": null,
              "prs_decided_30d": null,
              "issue_closed_ratio": 0.302,
              "closed_unmerged_prs": 6,
              "first_time_authors_30d": null,
              "first_time_prs_merged_30d": null,
              "first_time_prs_decided_30d": null
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "30% of issues closed",
                "points": 12.7,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 30
                    }
                  }
                ],
                "max_points": 42
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "0/6 decided PRs merged",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 0,
                      "decided": 6
                    }
                  }
                ],
                "max_points": 30
              },
              {
                "key": "newcomer_pr_acceptance",
                "name": "Newcomer PR acceptance",
                "detail": "no first-time contributor's PR decided in 30d",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_newcomer_prs",
                    "params": {
                      "days": 30
                    }
                  }
                ],
                "max_points": 13
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "good",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 77,
            "inputs": {
              "followers": 1290,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "broadinstitute",
              "public_repos": 1515,
              "account_age_days": 5804
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "1,290 followers of broadinstitute",
                "points": 22.4,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 1290,
                      "login": "broadinstitute"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "1515 public repos, account ~15 yr old",
                "points": 25,
                "status": "met",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 1515
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 15
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "at_risk",
        "name": "Engineering Quality",
        "value": 25,
        "weight": 0.19,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "critical",
            "name": "Engineering practices",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_ci_tests"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "has_ci": false,
              "has_tests": false,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "moderate",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 60,
            "inputs": {
              "topics": [
                "copy-number",
                "low-coverage-sequencing",
                "cell-free-dna"
              ],
              "has_wiki": true,
              "homepage": null,
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "3 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 3
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 30,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "ci_tests",
                    "dangerous_workflow",
                    "packaging",
                    "pinned_dependencies",
                    "signed_releases",
                    "token_permissions"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 30,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 12,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 6,
              "scorecard_aggregate": 3
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 3 contributing companies or organizations -- score normalized to 10",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no workflows found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "no SAST tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "No tokens found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 2
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "critical",
        "name": "AI Readiness",
        "value": 5,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "critical",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 12,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.23,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "23 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 12.3,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 23,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "critical",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_pinned_dependencies"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "has_nix": false,
              "has_tests": false,
              "lockfiles": [],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "critical",
            "name": "Code legibility for models",
            "note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "manageable_file_sizes"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "primary_language": "R",
              "largest_source_bytes": null,
              "source_files_sampled": 0,
              "oversized_source_files": 0
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "R without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "R"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "no source files detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_source_files",
                    "params": {}
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [],
      "scores": {},
      "primary": null,
      "evidence": [],
      "artifacts": [],
      "confidence": "none",
      "host_extension": false,
      "runs_as_process": false,
      "consumed_by_code": false
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
    "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
  ],
  "report_type": "repository",
  "generated_at": "2026-08-01T12:19:46.628283Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/ichorCNA.svg",
  "full_name": "broadinstitute/ichorCNA",
  "license_state": "standard",
  "license_spdx": "GPL-3.0"
}

评分是信号,而非担保。 评分反映的是 GitHub 上公开可见的实践——不是代码审计,也不是安全保证。

缺失数据将被剔除并重新归一化权重,绝不按零分计。方法论已版本化并公开:指标 v2.3.1、模式 v0.27.0—— 完整方法论 · 指标知识库.

单项结果在整体记录中的位置: 汇总统计.