原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"copy-number",
"low-coverage-sequencing",
"cell-free-dna"
],
"is_fork": false,
"size_kb": 11270,
"has_wiki": true,
"homepage": null,
"languages": {
"R": 104262,
"Shell": 608
},
"pushed_at": "2024-03-20T13:29:09Z",
"created_at": "2017-01-06T16:47:46Z",
"owner_type": "Organization",
"updated_at": "2026-07-18T12:48:24Z",
"description": "Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.",
"is_archived": false,
"is_disabled": false,
"license_spdx": "GPL-3.0",
"default_branch": "master",
"license_spdx_raw": "GPL-3.0",
"primary_language": "R",
"significant_languages": [
"R"
]
},
"owner": {
"blog": "http://www.broadinstitute.org/",
"name": "Broad Institute",
"type": "Organization",
"login": "broadinstitute",
"company": null,
"location": "Cambridge, MA",
"followers": 1290,
"avatar_url": "https://avatars.githubusercontent.com/u/393552?v=4",
"created_at": "2010-09-09T16:37:46Z",
"is_verified": null,
"public_repos": 1515,
"account_age_days": 5804
},
"license": {
"state": "standard",
"spdx_id": "GPL-3.0",
"raw_spdx": "GPL-3.0",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v0.2.0",
"kind": "minor",
"published_at": "2019-05-13T00:51:56Z"
},
{
"tag": "v0.1.0",
"kind": "minor",
"published_at": "2017-08-10T17:30:49Z"
}
],
"recent_commits": [
{
"oid": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
"body": "Fixes #68 where the corrected copy number for each bin is tumor-fraction-corrected even for low tumor fraction samples. correctIntegerCN now makes use of the argument \"minPurityToCorrect\" for bin-level correction (default set to 0.1 tumor fraction). The plotting, which uses the corrected copy number, should now be fixed.",
"is_bot": false,
"headline": "correct CN based on min tumor fraction",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-12-19T06:26:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "47ce8db4d81ada2d3ce09280661d1240f3dcd530",
"body": null,
"is_bot": false,
"headline": "fix bug when not estimating cell prev",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-08-22T23:11:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cd47551981c9e6667b0fc35df3dbc6502432a1e",
"body": null,
"is_bot": false,
"headline": "update plotting of corrected integer CN",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-08-12T23:03:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b61ee8f77088486e7fdd553b9ab45e5106cdb267",
"body": "In getGenomeWidePositions, chrs arg is converted to character vector to avoid problem when finding chromosome positions\nFixes #58",
"is_bot": false,
"headline": "fix error in getGenomeWidePositions",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-24T19:05:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c9f4378e2749b744719dd3b3fc34fbb7a7bca1dd",
"body": "Avoid error for genomeWide plot of single chromosome - fixes #57\nModified runIchorCNA.R to not coerce list into GRangesList; require GenomicRanges v1.36.0; might help with #58.\nNew hg38 Panel of Normal files with GRanges version (replaces deprecated RangedData versions)",
"is_bot": false,
"headline": "fix plotting errors; update panel of normals",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-23T06:16:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc89d52dc5a02e77094e5ca770c691494aca0911",
"body": null,
"is_bot": false,
"headline": "convert to GRanges for PON script",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-19T18:25:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "569327b76c8c43ab4984efd96e5f47fe21eb74f5",
"body": null,
"is_bot": false,
"headline": "add getSeqInfo to NAMESPACE; fix #56",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-17T17:07:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5c91f097f5a8d5e313943cc06690c7bda39d035f",
"body": null,
"is_bot": false,
"headline": "bug fix - typo for params",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-12T23:11:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d1725c811deef170c7f35b431f2a33824eae1030",
"body": "Enhancement (issue #41): High level amplifications are corrected to represent the purity/ploidy correct integer CN. These are provided as 3 additional columns in cna.seg, seg.txt.\n (Corrected_Copy_Number, Corrected_Call, logR_Copy_Number)\nPlotting: Handles seqinfo input to determine the actual lengt\n[…]\ntered_median.rd) is now a GRanges object. Also fixed issue with TargetedSequences object. #50 #55\nSnakemake: included additional user options for how much subclonal fraction to tolerate for solutions.",
"is_bot": false,
"headline": "bug fixes, updates, enhancements",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-12T22:51:41Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "1e39f1b06949bbc2abe16aa0c4f177d52e990c04",
"body": null,
"is_bot": false,
"headline": "typo/bugs #54; add getSeqInfo",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-07-08T16:37:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e271b7665a0b83604cbbfe09252d09aab418982e",
"body": null,
"is_bot": false,
"headline": "fix ichorCNA-package.Rd during install #52",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-27T23:19:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6ff8f0e05509478d03d118998f656d38a849f6d7",
"body": null,
"is_bot": false,
"headline": "Merge branch 'master' of github.com:broadinstitute/ichorCNA",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-27T20:09:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "03f353f9969573f5066ff632cb3dfbb171afced2",
"body": null,
"is_bot": false,
"headline": "update contacts, version",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-27T20:04:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d91730cd728dffeee62ea0171189d2fbcb7215e2",
"body": null,
"is_bot": false,
"headline": "move biocViews below depends",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-26T20:07:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "00aa1e1055508e83f5183eb43b35910b7e5df3e9",
"body": null,
"is_bot": false,
"headline": "add biocViews",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-26T20:05:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b32b21519c150bd8e09258ad3896cba4550e41cc",
"body": "include wigToGRanges in list of public functions. Address issue #50",
"is_bot": false,
"headline": "expose wigToGRanges",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-06-05T20:02:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6ede008f2b2ce15f9dc67ff9cf122c399b5c13ee",
"body": null,
"is_bot": false,
"headline": "user specify chrY coverage cutoff in snakemake",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-05-30T00:57:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "414f3c1a8c32fbe4236293b339710186513aa03d",
"body": "The deprecation of RangedData, which was the main data structure used by HMMcopy, required the transition of the code to use GRanges (GenomicRanges package). A new function \"wigToGRanges\" has been added and other changes have been made throughout the code to support GRanges instead of RangedData. Addresses #50\nAlso, added the ability for users to specify in the snakemake pipeline the fraction of chrY coverage cutoff to determine male vs female.",
"is_bot": false,
"headline": "switched to GRanges",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-05-30T00:57:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "99801a51fa2580c3b5ca38a4e9f41b94b364a641",
"body": null,
"is_bot": false,
"headline": "add ichorCNA_genomeStyle to snakemake config.yaml",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-02-13T18:28:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6d7e1563dfe8bbb62de4e2a848a6d458ae0e3b05",
"body": "For slurm:\nsnakemake -s ichorCNA.snakefile --cluster-config config/cluster_slurm.yaml --cluster \"sbatch -p {cluster.partition} --mem={cluster.mem} -t {cluster.time} -c {cluster.ncpus} -n {cluster.ntasks} -o {cluster.output}\" -j 50\n\nFor qsub:\nsnakemake -s ichorCNA.snakefile --jobscript config/cluster_qsub.sh --cluster-config config/cluster_qsub.yaml --cluster-sync \"qsub -l h_vmem={cluster.h_vmem},h_rt={cluster.h_rt} -pe {cluster.pe} -binding {cluster.binding}\" -j 50",
"is_bot": false,
"headline": "updated cluster usage",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-02-06T18:50:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c79efe39dc75734517adbc673576bf5d980b6e5b",
"body": "Fixes #43 where chrX is not properly normalize for samples with UCSC chromosome names",
"is_bot": false,
"headline": "fix bug that doesn't properly normalize chrX to relative log ratios",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-01-18T20:47:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a0c2192577e81b68918baa7411562a433e694ce7",
"body": "Address an error in later versions of snakemake that complains about multiple output paths being a child of another output.",
"is_bot": false,
"headline": "update for compatibility with snakemake v5+",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-01-15T23:29:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "24ade696ce8798cffa6ffd75b9f9935ab9706053",
"body": "The previous files had many bins that had scores < 0.9. This may be due to the use of different kmer read lengths.\nThis commit addresses Issue #22\nThe ones included in this commit were generated using the following:\n\nreference=\"GRCh38/Homo_sapiens_assembly38.fasta\";\nidxpref=\"GRCh38_index\";\npref=\"GRC\n[…]\nn/mapCounter -w 500000 -c chr1,chr2,chr3,chr4,chr5,chr6,chr7,chr8,chr9,chr10,chr11,chr12,chr13,chr14,chr15,chr16,chr17,chr18,chr19,chr20,chr21,chr22,chrX,chrY ${pref}_${kmer}bp.bw > map_hg38_500kb.wig",
"is_bot": false,
"headline": "replaced mappability files for hg38 (1Mb and 500kb)",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-01-12T05:48:17Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "4b45be03e37e4db1c28c019e3e8adbb41cabd11f",
"body": null,
"is_bot": false,
"headline": "allow user specified chrX log ratio threshold",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2019-01-12T05:39:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fe7aa5c4a4007eeca6b99a67f104981c637d512b",
"body": null,
"is_bot": false,
"headline": "Update badge from travis-ci.org to travis-ci.com",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2019-01-09T13:54:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4260c64e3be6d36772aa253b4ef8bc306a63eb26",
"body": null,
"is_bot": false,
"headline": "cytoband coords for hg38",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-09-26T20:42:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1d54a1fd4d8bd88aa0217791482be65bfe599db5",
"body": null,
"is_bot": false,
"headline": "hg19 gc map files for 10kb/50kb #35 [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-08-10T19:11:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f2dc65795ac32887aa9ff9152cabf62f96f6ea3e",
"body": null,
"is_bot": false,
"headline": "read_counter use binSize wildcard in log [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-08-03T00:45:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ccd357fae6036d080cbedd16d323f30f0543322a",
"body": null,
"is_bot": false,
"headline": "update for hg38 and chr naming style #10",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-08-01T21:25:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "108b0bb5d2c52da9f6b87bb06292cb3703da061f",
"body": null,
"is_bot": false,
"headline": "fixes bug where genomeStyle was undefined",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2018-08-01T20:06:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "56ce289320420c59d3fc7d3c7c2b2209208b37a7",
"body": null,
"is_bot": false,
"headline": "set chrNormalize to same as chrTrain #10",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-07-31T16:52:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5cb462303e24523d62323a9548b355103ce22f23",
"body": null,
"is_bot": false,
"headline": "some changes to support hg38 #10",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-07-31T16:51:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8021afa5b72f34e8fce3c30efe0bcae9f735122d",
"body": null,
"is_bot": false,
"headline": "Added additional bin sizes for hg38 wig files #10",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-07-10T21:06:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "92c8bd1e54a1221c55d590c27a91c994da62577a",
"body": null,
"is_bot": false,
"headline": "intersects tumour_copy with panel before normalizing, fixes #24",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2018-05-11T20:42:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d56208baba59256689d44dd60e60aa79e60bd14b",
"body": null,
"is_bot": false,
"headline": "now with mappability filter",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2018-05-11T19:25:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "760ce1e619f262dac82f1beee3b359b0f201de5e",
"body": null,
"is_bot": false,
"headline": "hg38 mappability files; thanks to @leraman #22 [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-05-09T13:55:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "05519bf02d4ae6c949b89551152cb107f86fdcb2",
"body": null,
"is_bot": false,
"headline": "fixes typo for #17",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2018-04-03T13:31:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c039a8367c61b5de8216d857539074e73b6d25da",
"body": null,
"is_bot": false,
"headline": "add script to generate panel of normals #3",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2018-03-02T01:05:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "91264fdc739f519d68cff9a9c6a18f32e410e3ab",
"body": null,
"is_bot": false,
"headline": "refactor code for plotting genomeWide_all_sols",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-01-14T17:17:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e5445828ce18dfc31f829082d7e44b846a6021e4",
"body": null,
"is_bot": false,
"headline": "exclude NA bins in segmentation",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-01-14T17:16:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0dac48b84d69553f9332f58589100cd388fb6b78",
"body": null,
"is_bot": false,
"headline": "fixed plotChrLine for plotSegs=F [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-01-14T17:16:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0fb0fb440c092450508797a5176e36581d9b9948",
"body": null,
"is_bot": false,
"headline": "fix coordEnd bug",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-01-14T02:02:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3455e1ecbb0be10b6685af5faa6647a2b4b5c687",
"body": null,
"is_bot": false,
"headline": "fix bug for EM of 1 iteration",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2018-01-14T02:01:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c1e41a84d52beb3faf53a2db80a14427fd95892c",
"body": null,
"is_bot": false,
"headline": "fixes plotting bug",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-11-29T17:20:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3df135e248b033418d99971e469f23131943f615",
"body": null,
"is_bot": false,
"headline": "added paper citation",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-11-12T01:10:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a202b202d89c7ea6ffe25e40f85713c863d4768f",
"body": null,
"is_bot": false,
"headline": "added option to plot or not plot seg green lines",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-10-25T21:13:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7f77c626ff8bdac55ca239550afada4bddeafe57",
"body": null,
"is_bot": false,
"headline": "added doc for config settings",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-10-25T21:13:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "807f63c975aa27802cfe729d4d065f2b169e9ea3",
"body": null,
"is_bot": false,
"headline": "fixed bug for segmentData() when includeHOMD=TRUE",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-10-25T21:12:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6c9f64c7782fe140adcd1b01313dc8851a5b2b60",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-09-01T20:36:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "21c22072f1c4579665853430f0c6dcb959bb0c52",
"body": null,
"is_bot": false,
"headline": "reformatted centromere table [ci skip]",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-21T14:38:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7847033d56970f744ed1bfe34a058263fe40a49",
"body": null,
"is_bot": false,
"headline": "PoN realigned to hg38",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-21T14:36:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88e541d07f45bfa96a3cab5a584d5bc5b6ae8ac3",
"body": "…ams #1",
"is_bot": false,
"headline": "modifications to run with or without 'chr' contigs and hg38 aligned b…",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-21T14:35:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "05c7f1f5849d04ffc4199a8a5cbb1f85c644c9c4",
"body": null,
"is_bot": false,
"headline": "added GC reference files for hg38 for #1 [ci skip]",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-15T16:52:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc04fe4e62556035e95ccfbaab667ca10ad16bea",
"body": null,
"is_bot": false,
"headline": "updated license [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-14T14:04:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0d065e16e04ae83158815267a50ed5dd7f1a6bc0",
"body": null,
"is_bot": false,
"headline": "add hg38 centromere gap file for issue #1 [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-11T17:00:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "66f96a4910d0f45bbe5d7da92fa1299e0fc59ea8",
"body": null,
"is_bot": false,
"headline": "added contact info [ci skip]",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-10T16:41:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4625844b52fce9c3bc2ef6dffbbc09a92cb7e0d9",
"body": null,
"is_bot": false,
"headline": "Delete ichorCNA.Rnw",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-09T21:52:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4d72fbe772aa76b68f2e31db1e0c1f8972405c99",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-09T21:17:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69fb1067e7a750c293bd53401e437869bde9bc38",
"body": null,
"is_bot": false,
"headline": "Update .travis.yml",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-09T21:13:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "12d6e62386b960b1b4414d60e41867039e3e3ef4",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-08-09T21:06:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "127d9fb34db70aea38c3ae822790e941e4d52315",
"body": null,
"is_bot": false,
"headline": "added travis image",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-09T20:48:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4fa0ba7ed46fbf5e1dbff6f9b595918f02b23328",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-09T16:05:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "47f660aba5a4beb80a1c3ba4e7068d2968c5333a",
"body": null,
"is_bot": false,
"headline": "update email contacts",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-08-09T16:03:50Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4813ff7518714d2a7fbd90a741fb8f69d75ad3af",
"body": null,
"is_bot": false,
"headline": "fixes small bug where data points were shifted on genome wide plot",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-26T18:53:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1da39972e31d229a7ba178e06b50efd1213ebdf8",
"body": null,
"is_bot": false,
"headline": "minor updates to main R script",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-26T18:34:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "503fdf8eadc59f17f16c6eec7e7ca3cdbbd448ce",
"body": null,
"is_bot": false,
"headline": "plot solutions to single PDF, added loglik to plot",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-20T16:03:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1a7e74b7f7e4e6c23509899bddf8e872c4570062",
"body": null,
"is_bot": false,
"headline": "default values arguments in help",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-17T20:19:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a054d0f74b010c9ce86613ce5df44047ee37836",
"body": null,
"is_bot": false,
"headline": "Add example genome wide plot",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-14T19:26:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1be4710d28cf0aeea28d6d574666494efdf8a665",
"body": null,
"is_bot": false,
"headline": "updated snakemake to accept gcwig and mapwig",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-14T19:15:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "279e467a24b8107f644bff8db5531bd1df998124",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-13T19:50:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f0480ee10bae70c0671a73c3f656932331f976bc",
"body": null,
"is_bot": false,
"headline": "Create LICESNSE",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-13T19:46:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f8db030bd870e9d99c1cfe53f5201c1e21ba291a",
"body": null,
"is_bot": false,
"headline": "delete license",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-13T19:40:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "15cf321cc6ca5f5d81b841ffe8293e2113aa1868",
"body": null,
"is_bot": false,
"headline": "moved details to wiki",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-13T19:21:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9174c6e5d8606aa854d82f835634f0f0c1529167",
"body": null,
"is_bot": false,
"headline": "move installation and usage to wiki",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-13T19:10:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "558a9b673767f11b29ded95a2dad9dc8a802d433",
"body": null,
"is_bot": false,
"headline": "add gcwig mapwig arguments to snakemake",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-13T18:18:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "548b3cd188524f6a31c38db138ea54f0b3e249d3",
"body": null,
"is_bot": false,
"headline": "gcwig and mapwig arguments",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-12T21:25:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0871da56384b37898872e3f3ae98d584dfd69afd",
"body": null,
"is_bot": false,
"headline": "expose output params function",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-12T21:04:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "020b278a144d554da37e5dab28494197aec26182",
"body": null,
"is_bot": false,
"headline": "updated imports in NAMESPACE",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-12T20:38:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "48f8407a905517813996e9776dc87de4194e8b5a",
"body": null,
"is_bot": false,
"headline": "added citation",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-07-06T14:33:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d985dc3d683591549108a05cb5c37d01ff5141f2",
"body": null,
"is_bot": false,
"headline": "fix build failures",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-07-03T15:51:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "339263c11bc02291781d333d029331d43d1324cb",
"body": null,
"is_bot": false,
"headline": "create readme",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-21T19:03:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4dbe96c45ca6556284f86e30532c0ea4c2861064",
"body": null,
"is_bot": false,
"headline": "added viktor to acknowledgments",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-21T18:59:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "49179ffd9fc0840a6a6e068e1c34e281fbe73d19",
"body": null,
"is_bot": false,
"headline": "removed runIchorcna.R instructions",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-21T18:57:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "57290ade629c714f7e35ef1c807c5b46e69396aa",
"body": null,
"is_bot": false,
"headline": "update readme with snakemake instructions",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-14T19:52:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "893598fca4a823563566dcbc53be707fa307580f",
"body": null,
"is_bot": false,
"headline": "snakemake runs for ichor",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-14T16:31:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8fb9127730124f261aab37ec9c900bfc7dfa8987",
"body": null,
"is_bot": false,
"headline": "exons arg can be None",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-14T16:30:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "95a13b43a5f20ebcea25018240b0af998267c78e",
"body": null,
"is_bot": false,
"headline": "minor mods",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-06-14T15:21:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "37490cc2f9d793f234b1138aced81b834c5464c0",
"body": null,
"is_bot": false,
"headline": "init commit of scripts dir with snakemake template",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-05-30T13:46:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5a5d9b4f37a3888f10156cd9c70f3a387f4f6581",
"body": null,
"is_bot": false,
"headline": "init commit of travis.yml",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-05-30T13:46:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6316bf9b1995be137362dfa9d38036cd3f534c4e",
"body": null,
"is_bot": false,
"headline": "added R build/inst ignore files; updated Desc file",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-05-30T13:46:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "21011979b3f1c353972dda1d80a1ab50c0823439",
"body": null,
"is_bot": false,
"headline": "merge multiSample branch",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-05-11T20:44:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e0b306b07ec2b09a04dbd7c3a5b19fac6b0df234",
"body": null,
"is_bot": false,
"headline": "bringing back multisample",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-05-11T20:35:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3fcef3f66068db96b33d0ec70ca45040f07db9dd",
"body": null,
"is_bot": false,
"headline": "added second time point wig",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-05-08T14:27:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8bf4f49dd5f2e2b11b1c9bccb792cf88ff47025a",
"body": null,
"is_bot": false,
"headline": "progress on vignette",
"author_name": "Justin Rhoades",
"author_login": "jurhoades",
"committed_at": "2017-05-08T14:26:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "de30bfe33c779fde96b16088ff370acada4fb140",
"body": null,
"is_bot": false,
"headline": "added missing function argument",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-04-19T19:21:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1c9c9e0116b527324a14807d4c9373bfdb7bbbcf",
"body": null,
"is_bot": false,
"headline": "typo",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-04-19T18:10:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a461d8f0c35b764807586d42ffaa6cb4c9fa868a",
"body": null,
"is_bot": false,
"headline": "added plotting params for opening device, specifying title",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-04-19T15:29:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4b3eeb4ef5e1bb919b3e51ee8152f1b5b463b7d4",
"body": null,
"is_bot": false,
"headline": "minor change to plotting code",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-04-18T21:02:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5c929cd11e0ef6b6e0a03bfb768b6149ae5402e4",
"body": null,
"is_bot": false,
"headline": "new files, updated plotting function",
"author_name": "rhoades",
"author_login": "jurhoades",
"committed_at": "2017-04-18T18:32:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "67d9a32929265857989b5725bf4301766b1c695e",
"body": null,
"is_bot": false,
"headline": "adjust chromosome plots based on ploidy estimate",
"author_name": "Gavin Ha",
"author_login": "gavinha",
"committed_at": "2017-03-29T15:52:23Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 2,
"commits_last_year": 0,
"latest_release_at": "2019-05-13T00:51:56Z",
"latest_release_tag": "v0.2.0",
"releases_from_tags": false,
"days_since_last_push": 863,
"active_weeks_last_year": 0,
"days_since_latest_release": 2637,
"mean_days_between_releases": 640.3
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 50,
"has_issue_template": false,
"has_code_of_conduct": true,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 103,
"stars": 214,
"watchers": 18,
"fork_history": {
"days": [
{
"date": "2017-11-02",
"count": 1
},
{
"date": "2017-12-19",
"count": 1
},
{
"date": "2018-03-08",
"count": 1
},
{
"date": "2018-03-27",
"count": 1
},
{
"date": "2018-03-28",
"count": 1
},
{
"date": "2018-05-17",
"count": 1
},
{
"date": "2018-06-27",
"count": 1
},
{
"date": "2018-07-13",
"count": 1
},
{
"date": "2018-08-07",
"count": 1
},
{
"date": "2018-08-09",
"count": 1
},
{
"date": "2018-08-26",
"count": 1
},
{
"date": "2018-08-28",
"count": 1
},
{
"date": "2018-10-25",
"count": 1
},
{
"date": "2018-12-03",
"count": 1
},
{
"date": "2019-03-15",
"count": 2
},
{
"date": "2019-04-04",
"count": 1
},
{
"date": "2019-04-08",
"count": 1
},
{
"date": "2019-04-11",
"count": 1
},
{
"date": "2019-04-17",
"count": 1
},
{
"date": "2019-05-02",
"count": 1
},
{
"date": "2019-05-29",
"count": 1
},
{
"date": "2019-07-15",
"count": 1
},
{
"date": "2019-12-02",
"count": 1
},
{
"date": "2019-12-06",
"count": 1
},
{
"date": "2020-01-15",
"count": 1
},
{
"date": "2020-02-05",
"count": 1
},
{
"date": "2020-03-25",
"count": 1
},
{
"date": "2020-04-21",
"count": 1
},
{
"date": "2020-04-23",
"count": 1
},
{
"date": "2020-04-28",
"count": 1
},
{
"date": "2020-05-28",
"count": 1
},
{
"date": "2020-07-28",
"count": 1
},
{
"date": "2020-08-17",
"count": 1
},
{
"date": "2020-08-31",
"count": 1
},
{
"date": "2020-09-22",
"count": 1
},
{
"date": "2020-10-24",
"count": 1
},
{
"date": "2020-11-19",
"count": 1
},
{
"date": "2020-11-29",
"count": 1
},
{
"date": "2021-01-06",
"count": 1
},
{
"date": "2021-01-20",
"count": 1
},
{
"date": "2021-01-26",
"count": 1
},
{
"date": "2021-02-08",
"count": 1
},
{
"date": "2021-04-12",
"count": 1
},
{
"date": "2021-04-14",
"count": 1
},
{
"date": "2021-04-24",
"count": 1
},
{
"date": "2021-05-19",
"count": 1
},
{
"date": "2021-09-21",
"count": 1
},
{
"date": "2021-10-14",
"count": 1
},
{
"date": "2021-11-15",
"count": 1
},
{
"date": "2021-11-24",
"count": 1
},
{
"date": "2022-02-24",
"count": 1
},
{
"date": "2022-04-16",
"count": 1
},
{
"date": "2022-08-08",
"count": 1
},
{
"date": "2022-09-20",
"count": 1
},
{
"date": "2022-09-21",
"count": 1
},
{
"date": "2022-10-18",
"count": 1
},
{
"date": "2022-11-14",
"count": 1
},
{
"date": "2023-01-04",
"count": 1
},
{
"date": "2023-01-26",
"count": 1
},
{
"date": "2023-01-30",
"count": 1
},
{
"date": "2023-02-10",
"count": 1
},
{
"date": "2023-02-25",
"count": 1
},
{
"date": "2023-04-19",
"count": 1
},
{
"date": "2023-05-29",
"count": 1
},
{
"date": "2023-07-16",
"count": 1
},
{
"date": "2023-12-13",
"count": 1
},
{
"date": "2023-12-25",
"count": 1
},
{
"date": "2024-02-08",
"count": 1
},
{
"date": "2024-02-25",
"count": 1
},
{
"date": "2024-03-01",
"count": 1
},
{
"date": "2024-03-15",
"count": 1
},
{
"date": "2024-06-05",
"count": 1
},
{
"date": "2024-06-21",
"count": 1
},
{
"date": "2024-07-09",
"count": 1
},
{
"date": "2024-11-30",
"count": 1
},
{
"date": "2025-07-16",
"count": 1
},
{
"date": "2025-09-05",
"count": 1
},
{
"date": "2025-09-26",
"count": 1
},
{
"date": "2025-10-02",
"count": 1
},
{
"date": "2025-12-09",
"count": 1
},
{
"date": "2026-03-05",
"count": 1
},
{
"date": "2026-03-20",
"count": 1
},
{
"date": "2026-04-24",
"count": 1
},
{
"date": "2026-05-27",
"count": 1
},
{
"date": "2026-05-28",
"count": 1
},
{
"date": "2026-06-09",
"count": 1
},
{
"date": "2026-07-11",
"count": 1
}
],
"complete": true,
"collected": 88,
"total_forks": 103
},
"star_history": null,
"open_issues_and_prs": 102
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [],
"advisories": {
"error": null,
"scope": null,
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [],
"dependencies": [],
"all_dependencies": {
"error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
"source": null,
"packages": [],
"collected": false,
"truncated": false,
"total_count": null,
"direct_count": null,
"indirect_count": null
}
},
"maintainership": {
"issues": {
"open_prs": 5,
"merged_prs": 0,
"open_issues": 97,
"closed_ratio": 0.302,
"closed_issues": 42,
"closed_unmerged_prs": 6
},
"bus_factor": 1,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "gavinha",
"commits": 78,
"avatar_url": "https://avatars.githubusercontent.com/u/9221688?v=4"
},
{
"type": "User",
"login": "jurhoades",
"commits": 32,
"avatar_url": "https://avatars.githubusercontent.com/u/15793246?v=4"
}
],
"contributors_sampled": 2,
"top_contributor_share": 0.709
},
"quality_signals": {
"has_ci": false,
"has_tests": false,
"ci_workflows": [],
"has_docs_dir": false,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 0,
"reason": "branch protection not enabled on development/release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": null,
"reason": "no pull request found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/30 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 3 contributing companies or organizations -- score normalized to 10",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": null,
"reason": "no workflows found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 0,
"reason": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": null,
"reason": "packaging workflow not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": null,
"reason": "no dependencies found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "no SAST tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": null,
"reason": "No tokens found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "5bfc03ed854f0e93fe5b624c97c1290fa0053837",
"ran_at": "2026-08-01T12:19:40Z",
"aggregate_score": 3,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": null,
"oldest_open_prs": [
{
"number": 38,
"created_at": "2018-08-28T19:36:47Z",
"last_comment_at": "2021-02-02T03:38:44Z",
"last_comment_author": "ryanrichholt"
},
{
"number": 91,
"created_at": "2021-01-27T15:28:35Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 106,
"created_at": "2021-11-24T17:38:06Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 130,
"created_at": "2024-02-25T14:05:32Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 145,
"created_at": "2025-12-09T21:16:58Z",
"last_comment_at": null,
"last_comment_author": null
}
],
"last_merged_pr_at": null,
"ci_last_conclusion": null,
"oldest_open_issues": [
{
"number": 10,
"created_at": "2017-12-11T17:47:48Z",
"last_comment_at": "2018-08-01T09:39:06Z",
"last_comment_author": "enmce"
},
{
"number": 11,
"created_at": "2017-12-14T11:50:06Z",
"last_comment_at": "2022-05-24T20:21:38Z",
"last_comment_author": "EvoMedLab"
},
{
"number": 13,
"created_at": "2018-03-06T18:02:59Z",
"last_comment_at": "2023-12-08T14:15:02Z",
"last_comment_author": "ilykos"
},
{
"number": 15,
"created_at": "2018-03-27T07:14:42Z",
"last_comment_at": "2018-05-18T12:55:15Z",
"last_comment_author": "gavinha"
},
{
"number": 16,
"created_at": "2018-03-27T09:21:26Z",
"last_comment_at": "2018-04-11T09:14:28Z",
"last_comment_author": "thestarocean"
},
{
"number": 18,
"created_at": "2018-04-11T13:47:50Z",
"last_comment_at": "2018-04-12T15:28:36Z",
"last_comment_author": "gavinha"
},
{
"number": 20,
"created_at": "2018-04-18T09:56:38Z",
"last_comment_at": "2018-04-19T14:03:14Z",
"last_comment_author": "gavinha"
},
{
"number": 21,
"created_at": "2018-04-19T11:54:52Z",
"last_comment_at": "2018-04-19T18:42:32Z",
"last_comment_author": "gavinha"
},
{
"number": 23,
"created_at": "2018-04-24T03:27:47Z",
"last_comment_at": "2018-04-27T10:08:22Z",
"last_comment_author": "thestarocean"
},
{
"number": 24,
"created_at": "2018-05-04T21:12:14Z",
"last_comment_at": "2018-05-11T18:59:31Z",
"last_comment_author": "2075222"
},
{
"number": 25,
"created_at": "2018-06-05T20:02:07Z",
"last_comment_at": "2018-06-15T00:11:35Z",
"last_comment_author": "andreykoch"
},
{
"number": 26,
"created_at": "2018-06-13T03:47:20Z",
"last_comment_at": "2018-06-13T13:26:34Z",
"last_comment_author": "gavinha"
},
{
"number": 28,
"created_at": "2018-07-09T07:57:56Z",
"last_comment_at": "2018-12-10T12:43:13Z",
"last_comment_author": "seedgeorge"
},
{
"number": 30,
"created_at": "2018-08-04T22:03:50Z",
"last_comment_at": "2023-09-29T20:09:21Z",
"last_comment_author": "ahstram"
},
{
"number": 31,
"created_at": "2018-08-07T07:56:01Z",
"last_comment_at": "2018-08-08T15:48:33Z",
"last_comment_author": "gavinha"
},
{
"number": 33,
"created_at": "2018-08-07T21:49:11Z",
"last_comment_at": "2021-02-02T02:26:09Z",
"last_comment_author": "ju-cheng"
},
{
"number": 35,
"created_at": "2018-08-09T23:43:57Z",
"last_comment_at": "2023-11-27T12:09:35Z",
"last_comment_author": "haojam"
},
{
"number": 37,
"created_at": "2018-08-14T22:15:14Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 39,
"created_at": "2018-08-29T23:51:47Z",
"last_comment_at": "2018-09-04T16:47:36Z",
"last_comment_author": "sengoku93"
},
{
"number": 42,
"created_at": "2018-09-05T14:37:36Z",
"last_comment_at": "2018-09-17T23:16:21Z",
"last_comment_author": "gavinha"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/broadinstitute/ichorCNA",
"host": "github.com",
"name": "ichorCNA",
"owner": "broadinstitute"
},
"metrics": {
"overall": {
"key": "overall",
"band": "critical",
"name": "Overall health",
"note": "The weighted overall 33 is calibrated to 27 on the published index scale (record calibration 2026-08-02). Abandonment Policy applies a 60% multiplier to weighted overall health and gives it a ceiling of 34.",
"notes": [
{
"code": "overall_calibration",
"params": {
"raw": 33,
"calibrated": 27,
"calibration": "2026-08-02"
}
},
{
"code": "abandonment_overall_adjustment",
"params": {
"cap": 34,
"pct": 60
}
}
],
"value": 16,
"inputs": {
"security": 30,
"vitality": 15,
"community": 63,
"governance": 39,
"calibration": "2026-08-02",
"engineering": 25,
"ai_readiness": 5,
"abandonment_cap": 34,
"abandonment_state": "likely_abandoned",
"weighted_overall_raw": 33,
"abandonment_multiplier": 60,
"weighted_overall_before_abandonment": 27,
"overall_after_abandonment_multiplier": 16
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "critical",
"name": "Vitality",
"value": 15,
"weight": 0.21,
"metrics": [
{
"key": "development_activity",
"band": "critical",
"name": "Development activity",
"note": null,
"notes": [],
"value": 1,
"inputs": {
"commits_last_year": 0,
"human_commit_share": 1,
"days_since_last_push": 863,
"active_weeks_last_year": 0
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 863 days ago",
"points": 0,
"status": "missed",
"details": [
{
"code": "push_recency",
"params": {
"days": 863
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "0/52 weeks with commits",
"points": 0,
"status": "missed",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 0
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "0 commits in the last year",
"points": 0,
"status": "missed",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 0
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "weak",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 36,
"inputs": {
"releases_count": 2,
"latest_release_tag": "v0.2.0",
"releases_from_tags": false,
"days_since_latest_release": 2637,
"mean_days_between_releases": 640.3
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "2 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 2
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 2637 days ago",
"points": 0,
"status": "missed",
"details": [
{
"code": "release_recency",
"params": {
"days": 2637
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~640.3 days",
"points": 5.4,
"status": "partial",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 640.3
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "moderate",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"cap": 34,
"state": "likely_abandoned",
"guards": [],
"signals": [
"unanswered_contributions",
"issue_rot",
"release_stall",
"scorecard_unmaintained"
],
"red_flag": true,
"multiplier_pct": 60,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": 5,
"unanswered_open_issues": 13,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 2418,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "no human commit for 2418 days; 4 unmet obligation(s): pull requests unanswered, issues unanswered, releases stalled, Scorecard reports it unmaintained",
"points": 60,
"status": "partial",
"details": [
{
"code": "abandonment_flagged",
"params": {
"days": 2418,
"count": 4,
"signals": "pull requests unanswered, issues unanswered, releases stalled, Scorecard reports it unmaintained"
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "moderate",
"name": "Community & Adoption",
"value": 63,
"weight": 0.17,
"metrics": [
{
"key": "popularity",
"band": "moderate",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 61,
"inputs": {
"forks": 103,
"stars": 214,
"watchers": 18,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "214 stars",
"points": 37.8,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 214
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "103 forks",
"points": 16.7,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 103
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "18 watchers",
"points": 6.8,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 18
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "good",
"name": "Community health",
"note": null,
"notes": [],
"value": 65,
"inputs": {
"has_readme": true,
"has_license": true,
"readme_badges": null,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": true,
"readme_badge_services": [],
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (GPL-3.0)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "GPL-3.0"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 13.5,
"status": "met",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "weak",
"name": "Sustainability & Governance",
"value": 39,
"weight": 0.23,
"metrics": [
{
"key": "maintainer_resilience",
"band": "at_risk",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 28,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 2,
"top_contributor_share": 0.709
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 71% of commits",
"points": 6.5,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 71
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "2 contributors",
"points": 2.7,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 2
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "critical",
"name": "Issue & PR responsiveness",
"note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"newcomer_pr_acceptance"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 15,
"inputs": {
"merged_prs": 0,
"open_issues": 97,
"closed_issues": 42,
"prs_merged_7d": null,
"prs_decided_7d": null,
"prs_merged_30d": null,
"prs_decided_30d": null,
"issue_closed_ratio": 0.302,
"closed_unmerged_prs": 6,
"first_time_authors_30d": null,
"first_time_prs_merged_30d": null,
"first_time_prs_decided_30d": null
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "30% of issues closed",
"points": 12.7,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 30
}
}
],
"max_points": 42
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "0/6 decided PRs merged",
"points": 0,
"status": "missed",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 0,
"decided": 6
}
}
],
"max_points": 30
},
{
"key": "newcomer_pr_acceptance",
"name": "Newcomer PR acceptance",
"detail": "no first-time contributor's PR decided in 30d",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_newcomer_prs",
"params": {
"days": 30
}
}
],
"max_points": 13
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 77,
"inputs": {
"followers": 1290,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "broadinstitute",
"public_repos": 1515,
"account_age_days": 5804
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "1,290 followers of broadinstitute",
"points": 22.4,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 1290,
"login": "broadinstitute"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "1515 public repos, account ~15 yr old",
"points": 25,
"status": "met",
"details": [
{
"code": "public_repos",
"params": {
"count": 1515
}
},
{
"code": "account_age_years",
"params": {
"years": 15
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "at_risk",
"name": "Engineering Quality",
"value": 25,
"weight": 0.19,
"metrics": [
{
"key": "engineering_practices",
"band": "critical",
"name": "Engineering practices",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_ci_tests"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_ci": false,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"topics": [
"copy-number",
"low-coverage-sequencing",
"cell-free-dna"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "3 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 3
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 30,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"ci_tests",
"dangerous_workflow",
"packaging",
"pinned_dependencies",
"signed_releases",
"token_permissions"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 30,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 12,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 6,
"scorecard_aggregate": 3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "no pull request found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/30 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 3 contributing companies or organizations -- score normalized to 10",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no workflows found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "no SAST tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "No tokens found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "exceptional",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"commit_weight_rule": {
"min_commits": 50,
"min_commit_share": 0.1
},
"review_only_matches": 0,
"below_threshold_exposures": [],
"assessed_self_published_locations": 2
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 5,
"weight": 0.04,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 12,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.23,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "23 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 12.3,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 23,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_pinned_dependencies"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "no dependencies found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "critical",
"name": "Code legibility for models",
"note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"manageable_file_sizes"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"primary_language": "R",
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "R without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "R"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "no source files detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_source_files",
"params": {}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
}
],
"classification": {
"labels": [],
"scores": {},
"primary": null,
"evidence": [],
"artifacts": [],
"confidence": "none",
"host_extension": false,
"runs_as_process": false,
"consumed_by_code": false
},
"metrics_version": "2.3.1"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-08-01T12:19:46.628283Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/b/broadinstitute/ichorCNA.svg",
"full_name": "broadinstitute/ichorCNA",
"license_state": "standard",
"license_spdx": "GPL-3.0"
}