Public record
Software health reportschema 0.27.0 · metrics 2.3.1 · 2026-07-30 20:35 UTC

ncbi / icn3d

web-based protein structure viewer and analysis tool interactively or in batch mode

JavaScriptCustom license★ 175 stars⑂ 54 forkssince Jan 2016View on GitHub ↗
KindLibraryhow this is determined
#icn3d#webgl#protein#3d-structure#3d-viewer#structure-viewer#nucleotide#chemical#protein-viewer#jupyter-notebook#snp#delphi#nodejs#molecular-viewer#ar#vr

ncbi/icn3d holds a health index of 57 out of 100, placing it in the Moderate band. It scores highest on Vitality (80/100) and lowest on Engineering Quality (31/100). It was last updated 8 days ago. A single contributor accounts for most of its recent work.

57
overall / 100
Moderate

Software health index

Metrics are grouped into weighted categories on one standardized 1–100 scale. Overall starts as their weighted mean, calibrated against the distribution of the public record so bands carry percentile meaning; when public evidence triggers the High-Risk Jurisdiction Policy, the rating is adjusted and receives an At Risk ceiling of 34.

57
Exceptional93-100The record's top tier (≈ top 5%); essentially all checked criteria met
Excellent80-92Strong across the board; minor gaps
Good65-79Healthy; gaps are limited and manageable
Moderate50-64Acceptable with notable gaps; review recommended
Weak35-49Material weaknesses across several areas
At Risk20-34Significant weaknesses; adoption warrants caution
Critical1-19Severe problems (abandoned, single-maintainer, no hygiene)
VitalityCommunity &AdoptionSustainability &GovernanceEngineeringQualitySecurityAI Readiness

Score profile

Each axis is a category. The shape matters more than the average — a healthy subject fills the whole shape, while a spike-and-crater profile means strength in one dimension is masking risk in another.

The weighted overall 55 is calibrated to 57 on the published index scale (record calibration 2026-08-02).

Ownership

NCBI - National Center for Biotechnology Information/NLM/NIHOrganization
2,843 followers152 public repossince Mar 2013

This repository is backed by an organization — shared, accountable stewardship that can outlive any single maintainer.

Package ecosystems

RegistryPackageVersionDownloads / moVersionsLast publishTags
npmicn3d3.51.22,7672508 days agoncbiicn3d3d-viewerproteinstructurenode
PyPIicn3dpy3.51.01,14812023 days agowebgl-basedproteinstructureviewer

Metrics by category

Vitality

Is the project alive — is code being written and are releases shipping?

80Excellent · 21% of overall

Development activity

67Good
How it's scored
28.8/36Push recency — last push 8 days ago
11.1/36Commit cadence — 16/52 weeks with commits
16.9/18Commit volume — 76 commits in the last year
10/10OpenSSF Scorecard: Maintained — 27 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
Inputs used
commits_last_year76
human_commit_share1
days_since_last_push8
active_weeks_last_year16

Release discipline

100Exceptional
How it's scored
27/27Ships releases — 100 releases published
36/36Release recency — latest release 10 days ago
27/27Release cadence — a release every ~22.5 days
0/10OpenSSF Scorecard: Signed-Releases — no data
Inputs used
releases_count100
latest_release_tagv3.51.1
releases_from_tagsno
days_since_latest_release10
mean_days_between_releases22.5
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.

Community & Adoption

Does the project have users, downloads, attention, and a welcoming setup for contributors?

58Moderate · 17% of overall

Popularity & adoption

57Moderate
How it's scored
36.3/60Stars — 175 stars
14.4/25Forks — 54 forks
6.2/15Watchers — 14 watchers
Inputs used
forks54
stars175
watchers14
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history

Community health

59Moderate
How it's scored
22.5/22.5README
16.9/22.5License — license file present, not a recognized license
0/18CONTRIBUTING guide
13.5/13.5Code of conduct
0/7.2Issue template
0/6.3PR template
Inputs used
has_readmeyes
has_licenseyes
readme_badges—
has_contributingno
has_issue_templateno
has_code_of_conductyes
readme_badge_services—
has_pull_request_templateno

Ecosystem adoption (downloads)

60Moderate
How it's scored
47.9/80Monthly downloads — 3,915 downloads/month across npm, pypi
0/20Registry dependents — not reported by this ecosystem
Inputs used
packagesicn3d, icn3dpy
dependents—
ecosystemsnpm, pypi
total_downloads—
monthly_downloads3,915
Excluded from scoring (no data or not applicable): Registry dependents. Remaining weights renormalized.

Sustainability & Governance

Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?

64Moderate · 23% of overall

Maintainer resilience (bus factor)

25At Risk
How it's scored
9/54Bus factor — 1 contributor(s) cover half of all commits
0.5/22.5Commit distribution — top contributor authored 98% of commits
5.4/13.5Contributor breadth — 4 contributors
10/10OpenSSF Scorecard: Contributors — project has 6 contributing companies or organizations
Inputs used
bus_factor1
contributors_sampled4
top_contributor_share0.98

Issue & PR responsiveness

64Moderate
How it's scored
39.4/42Issue resolution — 94% of issues closed
16/30PR acceptance — 8/15 decided PRs merged
0/13Newcomer PR acceptance — no first-time contributor's PR decided in 30d
0/15OpenSSF Scorecard: Code-Review — Found 0/30 approved changesets -- score normalized to 0
Inputs used
merged_prs8
open_issues7
closed_issues104
prs_merged_7d—
prs_decided_7d—
prs_merged_30d—
prs_decided_30d—
issue_closed_ratio0.937
closed_unmerged_prs7
first_time_authors_30d—
first_time_prs_merged_30d—
first_time_prs_decided_30d—
Excluded from scoring (no data or not applicable): newcomer_pr_acceptance. Remaining weights renormalized.

Ownership & stewardship

80Excellent
How it's scored
30/30Ownership backing — organization-owned
0/20Verified domain
24.8/25Owner reach — 2,843 followers of ncbi
25/25Track record — 152 public repos, account ~13 yr old
Inputs used
followers2,843
owner_typeOrganization
is_verified—
owner_loginncbi
public_repos152
account_age_days4,892

Package maintenance

100Exceptional
How it's scored
25/25Published & resolvable — 2 package(s) on npm, pypi
35/35Publish recency — latest publish 8 days ago
20/20Version history — 250 published versions
20/20Not deprecated — active, not deprecated or yanked
Inputs used
packagesicn3d, icn3dpy
ecosystemsnpm, pypi
any_deprecatedno
min_days_since_publish8

Engineering Quality

Are baseline engineering and documentation practices in place?

31At Risk · 19% of overall

Engineering practices

1Critical
How it's scored
0/24CI workflows
0/24Tests present
0/16Linter config
0/9.6Pre-commit hooks
0/6.4.editorconfig
0/20OpenSSF Scorecard: CI-Tests — no data
Inputs used
has_cino
has_testsno
has_editorconfigno
has_linter_configno
has_precommit_configno
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: CI-Tests. Remaining weights renormalized.

Documentation

75Good
How it's scored
30/30README
0/25Documentation directory
15/15Documentation / homepage site — https://www.ncbi.nlm.nih.gov/Structure/icn3d
10/10Repository description
10/10Topics — 16 topics
10/10Wiki
Inputs used
topicsicn3d, webgl, protein, 3d-structure, 3d-viewer, structure-viewer, nucleotide, chemical, protein-viewer, jupyter-notebook, snp, delphi, nodejs, molecular-viewer, ar, vr
has_wikiyes
homepagehttps://www.ncbi.nlm.nih.gov/Structure/icn3d
has_readmeyes
has_docs_dirno
has_descriptionyes

Security

Are visible security and supply-chain practices strong, without unresolved high-risk jurisdiction exposure?

38Weak · 16% of overall

Security posture

33At Risk
How it's scored
5.2/7.5Binary-Artifacts — binaries present in source code
0/7.5Branch-Protection — branch protection not enabled on development/release branches
0/2.5CI-Tests — no data
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/30 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 6 contributing companies or organizations
0/10Dangerous-Workflow — no data
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.2/2.5License — license file detected
7.5/7.5Maintained — 27 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
0/5Packaging — no data
0/5Pinned-Dependencies — no data
0/5SAST — no SAST tool detected
5/5Security-Policy — security policy file detected
0/7.5Signed-Releases — no data
0/7.5Token-Permissions — no data
0/7.5Vulnerabilities — 23 existing vulnerabilities detected
Inputs used
sourceopenssf_scorecard
checks_evaluated12
scorecard_versionv5.5.0
checks_inconclusive6
scorecard_aggregate3.3
Excluded from scoring (no data or not applicable): ci_tests, dangerous_workflow, packaging, pinned_dependencies, signed_releases, token_permissions. Remaining weights renormalized.

Dependency advisories

60Moderate
How it's scored
10.9/35Direct dependencies free of known advisories — 1 affected: axios 0.25.0 (high 8.6)
18.4/25Indirect dependencies free of known advisories — 1 affected: @tootallnate/once 1.1.2 (low 3.3)
30.8/40No advisories left outstanding — 2 advisory-carrying package(s) unaddressed past 90 days; oldest published 994 days ago
Inputs used
sourceosv
advisories24
affected_packages2
assessed_packages77
unassessed_packages0
affected_by_severityhigh 1, low 1
direct_affected_packages1
Matched the npm:icn3d@3.51.2 runtime dependency closure — what installing the published package pulls in — 77 packages. Reachability is not analyzed.

AI Readiness

How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight (4%): agent tooling is a real maintenance signal, but a repository with none can still reach 100/100.

36Weak · 4% of overall

Agent context & guidance

35Weak
How it's scored
0/45Agent instructions — no CLAUDE.md / AGENTS.md / editor rules
0/15Machine-readable docs (llms.txt)
35.2/40Legible commit history — 66 of 100 human commits state their intent (structured subject or explanatory body)
Inputs used
has_llms_txtno
legible_history_share0.66
agent_instruction_files—
agent_instruction_max_bytes—

Verify loop (build / test / typecheck)

31At Risk
How it's scored
18/18One-command bootstrap — icn3dnode/tmalign-icn3dnode/Makefile
0/22Automated tests
0/11Lint / format config
0/11Static type checking
10/10Reproducible environment — lockfile
0/10Demonstrated agent practice — no agent-authored commits among the last 100
0/8Automated maintenance — no automated dependency updates observed
0/10OpenSSF Scorecard: Pinned-Dependencies — no data
Inputs used
has_nixno
has_testsno
lockfilespackage-lock.json
has_dockerfileno
typed_languageno
bootstrap_filesicn3dnode/tmalign-icn3dnode/Makefile
has_devcontainerno
has_linter_configno
typecheck_configs—
agent_commit_share0
toolchain_manifests—
dependency_bot_commit_share0
Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.

Code legibility for models

48Weak
How it's scored
0/45Type-checkable code — JavaScript without a type-check config
48.2/55Manageable file sizes — 25/201 source files over 60KB
Inputs used
primary_languageJavaScript
largest_source_bytes1,930,687
source_files_sampled201
oversized_source_files25

Machine-readable interfaces

40Weak
How it's scored
0/40API schema (OpenAPI/GraphQL/proto)
0/20MCP server
40/40Runnable examples — example
Inputs used
example_dirsexample
has_mcp_signalno
api_schema_files—

Key facts

175GitHub stars
4contributors
76commits, last 12 months
8days since last push
100releases
1bus factor
7open issues
npm, PyPIpackage ecosystems

Data collection warnings

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

More detail

Star and fork history 0 ★ / 54 ⇿
0Stars
54Forks
99Releases

When each star and fork was added, collected from GitHub and bucketed by day. Cumulative growth sits directly above the daily additions it is made of, so the two read against each other: steady organic accretion looks nothing like an abrupt, short-lived burst. Where that difference is measurable, it is reported as growth authenticity.

01020304050605252016-012021-042026-07
Major 0Minor 35Patch 58

Each point covers 10 days.

OpenSSF Scorecard 3.3 / 10
3.3aggregate

Independent, tool-agnostic security assessment from the open-source OpenSSF Scorecard. Each check rewards a security practice, not a specific vendor's tool. Checks Scorecard could not determine are marked n/a and excluded from the security score (never counted as zero).Scorecard v5.5.0 · 2026-07-30 20:35 UTC

7Binary-Artifactsbinaries present in source code
0Branch-Protectionbranch protection not enabled on development/release branches
n/aCI-Testsno pull request found
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/30 approved changesets -- score normalized to 0
10Contributorsproject has 6 contributing companies or organizations
n/aDangerous-Workflowno workflows found
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
9Licenselicense file detected
10Maintained27 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10
n/aPackagingpackaging workflow not detected
n/aPinned-Dependenciesno dependencies found
0SASTno SAST tool detected
10Security-Policysecurity policy file detected
n/aSigned-Releasesno releases found
n/aToken-PermissionsNo tokens found
0Vulnerabilities23 existing vulnerabilities detected
Direct dependencies 16
RegistryPackageVersion constraintManifest
npmjquery^3.5.0package.json
npmjquery-uigithub:jquery/jquery-ui#1.13.2package.json
npmline-awesome^1.3.0package.json
npmthree~0.177.0package.json
npmuglify-js^3.3.9package.json
npmdel^5.1.0package.json
npmgulp-concat^2.6.1package.json
npmgulp-dom^1.0.0package.json
npmgulp-help^1.6.1package.json
npmgulp-rename^2.0.0package.json
npmgulp-replace^1.1.1package.json
npmgulp-uglify^3.0.2package.json
npmgulp-zip^5.0.1package.json
npmrollup^2.45.2package.json
npmrollup-plugin-node-resolve^5.2.0package.json
npmrollup-plugin-terser^7.0.2package.json
All dependencies 498

Full resolved dependency set from the GitHub dependency graph: 16 direct and 482 indirect (transitive) packages. The transitive closure is complete when the repository commits a lockfile.

RegistryPackageVersionRelation
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npmjquery3.7.1direct
npmjquery-ui1.13.2direct
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npm@nodelib/fs.scandir2.1.5indirect
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npm@types/resolve0.0.8indirect
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PyPIidisplay—indirect
PyPIjupyter—indirect
Dependency advisories 2

Installing npm:icn3d@3.51.2 pulls in 77 packages, direct and transitive: 2 carry known advisories, of which 1 are direct dependencies.

PackageVersionRelationSeverityAdvisoriesFixed in
axios0.25.0directhigh231.18.0
@tootallnate/once1.1.2indirectlow13.0.1

An advisory means the version recorded in the dependency graph falls inside an advisory’s affected range. Reachability is not analysed, and the graph includes development and test pins — a finding may concern tooling rather than shipped software.

Raw JSON report machine-readable
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              "has_wiki": true,
              "homepage": "https://www.ncbi.nlm.nih.gov/Structure/icn3d",
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": "https://www.ncbi.nlm.nih.gov/Structure/icn3d",
                "points": 15,
                "status": "met",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "16 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 16
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "weak",
        "name": "Security",
        "value": 38,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): CI-Tests, Dangerous-Workflow, Packaging, Pinned-Dependencies, Signed-Releases, Token-Permissions. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "ci_tests",
                    "dangerous_workflow",
                    "packaging",
                    "pinned_dependencies",
                    "signed_releases",
                    "token_permissions"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 33,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 12,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 6,
              "scorecard_aggregate": 3.3
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "binaries present in source code",
                "points": 5.2,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection not enabled on development/release branches",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "no pull request found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/30 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 6 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no workflows found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.2,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "27 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "no SAST tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file detected",
                "points": 5,
                "status": "met",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "No tokens found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "23 existing vulnerabilities detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "dependency_advisories",
            "band": "moderate",
            "name": "Dependency advisories",
            "note": "Matched the npm:icn3d@3.51.2 runtime dependency closure — what installing the published package pulls in — 77 packages. Reachability is not analyzed.",
            "notes": [
              {
                "code": "advisories_scope_published",
                "params": {
                  "package": "npm:icn3d@3.51.2",
                  "assessed": 77
                }
              },
              {
                "code": "advisories_reachability",
                "params": {}
              }
            ],
            "value": 60,
            "inputs": {
              "source": "osv",
              "advisories": 24,
              "affected_packages": 2,
              "assessed_packages": 77,
              "unassessed_packages": 0,
              "affected_by_severity": "high 1, low 1",
              "direct_affected_packages": 1
            },
            "components": [
              {
                "key": "direct_dependencies_free_of_known_advisories",
                "name": "Direct dependencies free of known advisories",
                "detail": "1 affected: axios 0.25.0 (high 8.6)",
                "points": 10.9,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_affected",
                    "params": {
                      "count": 1,
                      "packages": "axios 0.25.0 (high 8.6)"
                    }
                  }
                ],
                "max_points": 35
              },
              {
                "key": "indirect_dependencies_free_of_known_advisories",
                "name": "Indirect dependencies free of known advisories",
                "detail": "1 affected: @tootallnate/once 1.1.2 (low 3.3)",
                "points": 18.4,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_affected",
                    "params": {
                      "count": 1,
                      "packages": "@tootallnate/once 1.1.2 (low 3.3)"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "no_advisories_left_outstanding",
                "name": "No advisories left outstanding",
                "detail": "2 advisory-carrying package(s) unaddressed past 90 days; oldest published 994 days ago",
                "points": 30.8,
                "status": "partial",
                "details": [
                  {
                    "code": "advisories_stale",
                    "params": {
                      "days": 90,
                      "count": 2,
                      "oldest": 994
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "malicious_dependencies",
            "band": "exceptional",
            "name": "Malicious dependencies",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "source": "osv",
              "meaning": "reported as a malicious package by the OpenSSF corpus; the remedy is removal or moving off the compromised name, never an upgrade of the same artifact. Versions the registry has since pulled are listed but not scored",
              "packages": [],
              "red_flag": false,
              "assessed_packages": 77,
              "malicious_packages": 0,
              "direct_malicious_packages": 0,
              "withdrawn_malicious_packages": 0,
              "installable_malicious_packages": 0
            },
            "components": [
              {
                "key": "no_dependency_reported_as_a_malicious_package",
                "name": "No dependency reported as a malicious package",
                "detail": "no dependency is reported as a malicious package",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "no_malicious_dependencies",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "exceptional",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "commit_weight_rule": {
                "min_commits": 50,
                "min_commit_share": 0.1
              },
              "review_only_matches": 0,
              "below_threshold_exposures": [],
              "assessed_self_published_locations": 2
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "weak",
        "name": "AI Readiness",
        "value": 36,
        "weight": 0.04,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "weak",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 35,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.66,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "66 of 100 human commits state their intent (structured subject or explanatory body)",
                "points": 35.2,
                "status": "partial",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 66,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "at_risk",
            "name": "Verify loop (build / test / typecheck)",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Pinned-Dependencies. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_pinned_dependencies"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 31,
            "inputs": {
              "has_nix": false,
              "has_tests": false,
              "lockfiles": [
                "package-lock.json"
              ],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [
                "icn3dnode/tmalign-icn3dnode/Makefile"
              ],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": "icn3dnode/tmalign-icn3dnode/Makefile",
                "points": 18,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "icn3dnode/tmalign-icn3dnode/Makefile"
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": "lockfile",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "lockfile"
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "no agent-authored commits among the last 100",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_authored_commits",
                    "params": {
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "no dependencies found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "weak",
            "name": "Code legibility for models",
            "note": null,
            "notes": [],
            "value": 48,
            "inputs": {
              "primary_language": "JavaScript",
              "largest_source_bytes": 1930687,
              "source_files_sampled": 201,
              "oversized_source_files": 25
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "JavaScript without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "JavaScript"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "25/201 source files over 60KB",
                "points": 48.2,
                "status": "partial",
                "details": [
                  {
                    "code": "oversized_source_files",
                    "params": {
                      "kb": 60,
                      "sampled": 201,
                      "oversized": 25
                    }
                  }
                ],
                "max_points": 55
              }
            ]
          },
          {
            "key": "ai_interfaces",
            "band": "weak",
            "name": "Machine-readable interfaces",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "example_dirs": [
                "example"
              ],
              "has_mcp_signal": false,
              "api_schema_files": []
            },
            "components": [
              {
                "key": "api_schema_openapi_graphql_proto",
                "name": "API schema (OpenAPI/GraphQL/proto)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 40
              },
              {
                "key": "mcp_server",
                "name": "MCP server",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "runnable_examples",
                "name": "Runnable examples",
                "detail": "example",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "file_list",
                    "params": {
                      "files": "example"
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
      }
    ],
    "classification": {
      "labels": [
        "library"
      ],
      "scores": {
        "library": 12,
        "notebook": 2
      },
      "primary": "library",
      "evidence": [
        {
          "tier": "distribution",
          "label": "library",
          "source": "registry:npm",
          "weight": 6
        },
        {
          "tier": "distribution",
          "label": "library",
          "source": "registry:pypi",
          "weight": 6
        },
        {
          "tier": "tags",
          "label": "notebook",
          "source": "tag:jupyter-notebook",
          "weight": 2
        }
      ],
      "artifacts": [],
      "confidence": "medium",
      "host_extension": false,
      "runs_as_process": false,
      "consumed_by_code": true
    },
    "metrics_version": "2.3.1"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-30T20:35:16.511245Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/n/ncbi/icn3d.svg",
  "full_name": "ncbi/icn3d",
  "license_state": "custom",
  "license_spdx": null
}

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Scores are signals, not warranties. They reflect publicly visible practices on GitHub — not a code audit, and not a security guarantee.

Missing data is excluded and weights renormalized, never scored as zero. Methodology is versioned and open: metrics v2.3.1, schema v0.27.0 — full methodology · metrics wiki.

How one result sits in the wider record: aggregate statistics — npm, PyPI.