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#ncbi

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

8 records
Tagged “ncbi”Ranked by health index
PyPI
86Excellenthealth index
musharna/data-aggregator-mcp
Unified research-data acquisition MCP — search & fetch datasets across Zenodo, DataCite, NCBI omics (GEO/SRA/BioProject), and literature (PubMed/OpenAIRE) behind one normalized model.
Python★ 4↓ 17K/moOct 12, 2026
MITOct 12, 2026 · metrics 2.10.0
npm
83Excellenthealth index
cyanheads/pubmed-mcp-server
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.
TypeScript★ 148↓ 15K/moSep 19, 2026
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI
78Goodhealth index
u9401066/pubmed-search-mcp
MCP SDK v2 server for PubMed and multi-source biomedical research, with resilient search, full text, citations, and tenant-safe deployment.
Python★ 28↓ 2,422/moOct 1, 2026
Custom licenseOct 1, 2026 · metrics 2.10.0
PyPI
75Goodhealth index
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Python · Nextflow · Batchfile★ 29Sep 11, 2026
Apache-2.0Sep 11, 2026 · metrics 2.10.0
npm
73Goodhealth index
nickjlamb/pubcrawl
MCP server giving AI assistants verifiable access to PubMed, Europe PMC, US/UK drug labelling, and ClinicalTrials.gov. Built by PharmaTools.AI.
TypeScript★ 14↓ 467/moSep 19, 2026
MITSep 19, 2026 · metrics 2.10.0
—
62Moderatehealth index
ncbi/datasets
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Jupyter Notebook · Go★ 556Sep 10, 2026
Custom licenseSep 10, 2026 · metrics 2.10.0
PyPI · npm
56Moderatehealth index
ncbi/icn3d
web-based protein structure viewer and analysis tool interactively or in batch mode
JavaScript★ 175↓ 2,057/moSep 14, 2026
Custom licenseSep 14, 2026 · metrics 2.10.0
PyPI · npm
36Weakhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1↓ 64/moSep 9, 2026
MITSep 9, 2026 · metrics 2.10.0