PyPI
PixelgenTechnologies/pixelator
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.
MITOct 19, 2026 · metrics 2.10.0
All tags
Catalogue tag
#protein
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
40 records
npm
chanzuckerberg/sci-components
2021 Science Design System Component Library
MITSep 14, 2026 · metrics 2.10.0
PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
PyPI
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
GPL-3.0Sep 8, 2026 · metrics 2.10.0
npm
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
MITSep 13, 2026 · metrics 2.10.0
PyPI
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
prody/ProDy
A Python Package for Protein Dynamics Analysis
Custom licenseOct 18, 2026 · metrics 2.10.0
PyPI
haddocking/protein-detective
Python package to detect proteins in EM density maps.
Apache-2.0Sep 8, 2026 · metrics 2.10.0
npm
cyanheads/uniprot-mcp-server
Search UniProtKB by protein function, fetch curated records, map IDs across databases, and pull reference proteomes, taxonomy, and sequences via MCP. STDIO or Streamable HTTP.
Apache-2.0Oct 18, 2026 · metrics 2.10.0
PyPI
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
MITSep 9, 2026 · metrics 2.10.0
PyPI
elkins-lab/synth-saxs
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
MITSep 9, 2026 · metrics 2.10.0
PyPI · npm
merv1n34k/sgffp
Read, write, and manipulate SnapGene files (.dna, .rna, .prot)
MITSep 16, 2026 · metrics 2.10.0
npm · PyPI
Full-Spectrum-Analytics/dash-seqviz
A dash wrapper of the javascript DNA, RNA and protein sequence viewer
MITSep 8, 2026 · metrics 2.10.0
crates.io · npm · PyPI
bio-rs/bio-rs
AI-ready biological data I/O, validation, and tokenization engine
Custom licenseSep 8, 2026 · metrics 2.10.0
PyPI
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
MITSep 8, 2026 · metrics 2.10.0
crates.io · PyPI
HFooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
MITSep 8, 2026 · metrics 2.10.0
PyPI · npm
ncbi/icn3d
web-based protein structure viewer and analysis tool interactively or in batch mode
Custom licenseSep 14, 2026 · metrics 2.10.0
PyPI
debbiemarkslab/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
Custom licenseSep 13, 2026 · metrics 2.10.0
crates.io · npm
TKanX/bio-forge
A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
MITSep 8, 2026 · metrics 2.10.0
PyPI · crates.io · npm
miguelcsx/molframe
:dna: A batteries-included structural bioinformatics engine
MITOct 10, 2026 · metrics 2.10.0
PyPI · crates.io · npm
miguelcsx/molgfx
🎨 A semantic GPU-native molecular graphics engine
MITOct 15, 2026 · metrics 2.10.0
PyPI
a-r-j/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
MITSep 8, 2026 · metrics 2.10.0
npm
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
MITSep 8, 2026 · metrics 2.10.0
PyPI
gqy20/protein-mcp
FastMCP-based protein data access tools for bioinformatics research
MITSep 8, 2026 · metrics 2.10.0
crates.io
caltechmsc/dreid-pack
A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.
MITSep 10, 2026 · metrics 2.10.0
npm
MICommunity/ComplexViewer
web based visualisation of molecular interaction data
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
a-r-j/CPDB
Cython implementation of PDB -> DataFrame parsing
MITSep 8, 2026 · metrics 2.10.0
PyPI
beautiful-atoms/beautiful-atoms
Python module for drawing and rendering beautiful atoms and molecules using Blender.
GPL-3.0Sep 9, 2026 · metrics 2.10.0
PyPI
JinyuanSun/PymolFold
Protein folding in Pymol
MITSep 10, 2026 · metrics 2.10.0
npm
gemmimol/gemmimol
Macromolecular viewer for crystallographers (WebGL)
MITSep 8, 2026 · metrics 2.10.0