PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
All tags
Catalogue tag
#protein
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
33 records
npm
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
MITJul 23, 2026 · metrics 2.10.0
PyPI
bradyajohnston/molecularnodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
GPL-3.0Jul 15, 2026 · metrics 2.10.0
PyPI
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Apache-2.0Jul 15, 2026 · metrics 2.10.0
PyPI
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
MITJul 15, 2026 · metrics 2.10.0
PyPI
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
MITJul 17, 2026 · metrics 2.10.0
PyPI
elkins-lab/synth-saxs
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
MITJul 17, 2026 · metrics 2.10.0
npm · PyPI
full-spectrum-analytics/dash-seqviz
A dash wrapper of the javascript DNA, RNA and protein sequence viewer
MITJul 15, 2026 · metrics 2.10.0
PyPI · crates.io
hfooladi/pdbrust
A Rust library for parsing PDB (Protein Data Bank) files
MITJul 15, 2026 · metrics 2.10.0
PyPI · npm
merv1n34k/sgffp
Read, write, and manipulate SnapGene files (.dna, .rna, .prot)
MITAug 3, 2026 · metrics 2.10.0
npm · PyPI
ncbi/icn3d
web-based protein structure viewer and analysis tool interactively or in batch mode
Custom licenseJul 30, 2026 · metrics 2.10.0
PyPI
a-r-j/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
MITJul 15, 2026 · metrics 2.10.0
PyPI
debbiemarkslab/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
Custom licenseJul 26, 2026 · metrics 2.10.0
crates.io · npm
tkanx/bio-forge
A high-performance, pure Rust toolkit for standardizing and preparing biomolecular systems (proteins & nucleic acids). It heals missing atoms, resolves protonation states, adds solvation, and unifies topologies to forge simulation-ready structures.
MITJul 15, 2026 · metrics 2.10.0
PyPI
beautiful-atoms/beautiful-atoms
Python module for drawing and rendering beautiful atoms and molecules using Blender.
GPL-3.0Jul 17, 2026 · metrics 2.10.0
PyPI
AkhilTeja2209/Proteinspy
Python library and a CLI tool to analyze protein sample files
MITJul 15, 2026 · metrics 2.10.0
npm
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
MITJul 15, 2026 · metrics 2.10.0
PyPI
JinyuanSun/PymolFold
Protein folding in Pymol
MITJul 17, 2026 · metrics 2.10.0
npm
gemmimol/gemmimol
Macromolecular viewer for crystallographers (WebGL)
MITJul 15, 2026 · metrics 2.10.0
PyPI
gqy20/protein-mcp
FastMCP-based protein data access tools for bioinformatics research
MITJul 15, 2026 · metrics 2.10.0
—
uclorengogroup/cath-tools
Protein structure comparison tools such as SSAP and SNAP
GPL-3.0Jul 15, 2026 · metrics 2.10.0
PyPI
a-r-j/cpdb
Cython implementation of PDB -> DataFrame parsing
MITJul 15, 2026 · metrics 2.10.0
crates.io
caltechmsc/dreid-pack
A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.
MITJul 17, 2026 · metrics 2.10.0
npm
calipho-sib/feature-viewer
Library to visualize protein sequence features in javascript using D3 - From SIB CALIPHO group; neXtProt project
Custom licenseJul 17, 2026 · metrics 2.10.0
npm
ppillot/biomsalign
JavaScript library for Multiple Sequence Alignment
MITJul 15, 2026 · metrics 2.10.0
PyPI
amorehead/pdb-tools
A dependency-free cross-platform swiss army knife for PDB files.
Apache-2.0Jul 15, 2026 · metrics 2.10.0
PyPI
jpuglia/proteinloc
No repository description published.
No licenseJul 15, 2026 · metrics 2.10.0
npm
calipho-sib/sequence-viewer
neXtProt protein sequence viewer (javascript) - From SIB CALIPHO group; neXtProt project
No licenseJul 15, 2026 · metrics 2.10.0
npm
micommunity/complexviewer
web based visualisation of molecular interaction data
Apache-2.0Jul 15, 2026 · metrics 2.10.0
npm
tpca/mecu-graph
No repository description published.
Apache-2.0Sep 5, 2026 · metrics 2.10.0