#bioinformatics

Data structures, algorithms, and parsing for crystallography

FlamingoDB is an open source scientific database engine built to empower researchers, scientists, and developers with efficient tools for managing, querying, and analyzing complex scientific datasets.

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

FastMCP-based protein data access tools for bioinformatics research

Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.

Node application to run CanvasXpress

This application is designed to create mmcif files from facilities data.

A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.

GPU-powered interactive gene neighborhood visualization with deck.gl and React

Neighbor Joining in rust, with python and JS/WASM wrappers

CrossMap is a python program to lift over genome coordinates from one genome version to another.

Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.

Cython implementation of PDB -> DataFrame parsing

Biobb (BioExcel building blocks) packages are Python building blocks that create new layer of compatibility and interoperability over popular bioinformatics tools.

A genome completeness evaluation tool based on miniprot

No repository description published.

Read raw DNA exports from 23andMe, AncestryDNA, MyHeritage, FamilyTreeDNA and LivingDNA: detect service and chip, count markers, check rsID coverage. Go library and CLI, fully local — your genome file never leaves your machine.

Protein folding in Pymol

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

AI-assisted troubleshooting for AWS HealthOmics genomic workflows with custom knowledge base support

Svelte 5 molecular biology component library.

No repository description published.