Catalogue tag

#bioinformatics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

201 records

Tagged “bioinformatics”Ranked by health index

PyPI

65Goodhealth index

kcleal/dysgu

Toolkit for calling structural variants using short or long reads

Cython · Python · C++★ 117↓ 1,920/moSep 13, 2026

MITSep 13, 2026 · metrics 2.10.0

PyPI · npm

65Goodhealth index

merv1n34k/sgffp

Read, write, and manipulate SnapGene files (.dna, .rna, .prot)

Python★ 8↓ 7,816/moSep 16, 2026

MITSep 16, 2026 · metrics 2.10.0

crates.io

63Moderatehealth index

COMBINE-lab/piscem

Mapping sequencing data to De Bruijn graphs, fast

Rust · Shell★ 38↓ 22/moOct 20, 2026

BSD-3-ClauseOct 20, 2026 · metrics 2.10.0

PyPI

63Moderatehealth index

MannLabs/alphaquant

An open-source Python package for accurate and sensitive peptide and protein quantification.

Python · Jupyter Notebook★ 21↓ 655/moOct 16, 2026

Apache-2.0Oct 16, 2026 · metrics 2.10.0

63Moderatehealth index

bebop/poly

A Go package for engineering organisms.

Go★ 737Sep 9, 2026

MITSep 9, 2026 · metrics 2.10.0

PyPI

63Moderatehealth index

bioexcel/biobb_structure_checking

No repository description published.

Python · Jupyter Notebook★ 13↓ 569/moOct 18, 2026

Apache-2.0Oct 18, 2026 · metrics 2.10.0

Maven

63Moderatehealth index

bridgedb/BridgeDb

The BridgeDb Library source code

Java★ 37Oct 19, 2026

Apache-2.0Oct 19, 2026 · metrics 2.10.0

Maven

63Moderatehealth index

egonw/bacting

Bacting is an open-source platform for chemo- and bioinformatics based on Bioclipse that defines a number of common domain objects and wraps common functionality, providing a toolkit independent, scriptable solution to handle data from the life sciences.

Java★ 23Sep 7, 2026

Custom licenseSep 7, 2026 · metrics 2.10.0

PyPI

63Moderatehealth index

igvteam/igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Python · HTML★ 436↓ 3,026/moSep 13, 2026

MITSep 13, 2026 · metrics 2.10.0

crates.io

63Moderatehealth index

ngless-toolkit/ngless

NGLess: NGS with less work

Rust★ 152Oct 18, 2026

Custom licenseOct 18, 2026 · metrics 2.10.0

PyPI

63Moderatehealth index

pepkit/pepdbagent

Database for storing sample metadata

Python★ 2↓ 1,314/moSep 8, 2026

BSD-2-ClauseSep 8, 2026 · metrics 2.10.0

PyPI

63Moderatehealth index

sortmerna/sortmerna

SortMeRNA: next-generation sequence filtering and alignment tool

C++ · C · Jinja★ 303Sep 9, 2026

GPL-3.0Sep 9, 2026 · metrics 2.10.0

—

62Moderatehealth index

BioJulia/BioStructures.jl

A Julia package to read, write and manipulate macromolecular structures

Julia★ 106Sep 10, 2026

Custom licenseSep 10, 2026 · metrics 2.10.0

npm · PyPI

62Moderatehealth index

Full-Spectrum-Analytics/dash-seqviz

A dash wrapper of the javascript DNA, RNA and protein sequence viewer

Python · JavaScript★ 1↓ 69/moSep 8, 2026

MITSep 8, 2026 · metrics 2.10.0

crates.io

62Moderatehealth index

TyberiusPrime/fastqrab

The penultimate FastQ processor. Flexible Read Modification.

Rust · HTML★ 0↓ 198/moAug 23, 2026

MITAug 23, 2026 · metrics 2.10.0

crates.io · npm · PyPI

62Moderatehealth index

bio-rs/bio-rs

AI-ready biological data I/O, validation, and tokenization engine

Rust · Python★ 3↓ 925/moSep 8, 2026

Custom licenseSep 8, 2026 · metrics 2.10.0

crates.io

62Moderatehealth index

fulcrumgenomics/bgzf

BGZF compression library in Rust

Rust★ 9↓ 8,536/moSep 18, 2026

Custom licenseSep 18, 2026 · metrics 2.10.0

PyPI

62Moderatehealth index

iskandr/osteosarc

Cancer genomics data from osteosarc.com

Python★ 0↓ 3,939/moSep 26, 2026

Apache-2.0Sep 26, 2026 · metrics 2.10.0

npm · PyPI

62Moderatehealth index

plotly/dash-bio

Open-source bioinformatics components for Dash

Python · CSS · JavaScript★ 573↓ 732/moSep 8, 2026

MITSep 8, 2026 · metrics 2.10.0

npm

62Moderatehealth index

warelab/tbrowse

gene tree React component

TypeScript★ 0↓ 410/moSep 19, 2026

MITSep 19, 2026 · metrics 2.10.0

npm

60Moderatehealth index

GMOD/g2p_mapper

No repository description published.

TypeScript★ 0↓ 9,263/moSep 8, 2026

MITSep 8, 2026 · metrics 2.10.0

—

60Moderatehealth index

brentp/somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Nim · HTML★ 334Sep 12, 2026

MITSep 12, 2026 · metrics 2.10.0

crates.io

60Moderatehealth index

fulcrumgenomics/fgoxide

Quality of life improvements in Rust.

Rust★ 6↓ 7,632/moSep 26, 2026

MITSep 26, 2026 · metrics 2.10.0

RubyGems

60Moderatehealth index

kojix2/ruby-minimap2

Powerful long read aligner for Ruby

C · Ruby★ 14Oct 19, 2026

MITOct 19, 2026 · metrics 2.10.0

PyPI

60Moderatehealth index

marcorusc/mcp-biomodelling-servers

A repository that stores all the MCP servers for creating biological mechanistic models. It includes server for NeKo, MaBoSS, PhysiCell/PhysiBoSS.

Python★ 19↓ 1,519/moOct 12, 2026

No licenseOct 12, 2026 · metrics 2.10.0

crates.io

60Moderatehealth index

pangenome/seqwish

alignment to variation graph inducer

Rust · C++★ 165↓ 5/moSep 19, 2026

MITSep 19, 2026 · metrics 2.10.0

crates.io

60Moderatehealth index

stjude-rust-labs/tes

A crate for working with the Task Execution Service (TES) specification.

Rust★ 13↓ 14.7K/moSep 13, 2026

Apache-2.0Sep 13, 2026 · metrics 2.10.0

PyPI

60Moderatehealth index

tanaylab/pymisha

Genomic data analysis suite in python

Python · C++★ 2↓ 2,400/moAug 25, 2026

MITAug 25, 2026 · metrics 2.10.0

PyPI

59Moderatehealth index

Electrostatics/mmcif_pdbx

Yet another version of PDBx/mmCIF Python implementation

Python★ 9Sep 8, 2026

CC0-1.0Sep 8, 2026 · metrics 2.10.0

PyPI

59Moderatehealth index

JLSteenwyk/orthosnap

a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

Python★ 32↓ 221/moSep 10, 2026

MITSep 10, 2026 · metrics 2.10.0