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#biophysics

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

12 records
Tagged “biophysics”Ranked by health index
PyPI
81Goodhealth index
MDAnalysis/mdanalysis
MDAnalysis is a Python library to analyze molecular dynamics simulations.
Python★ 1,610↓ 219.6K/moJul 21, 2026
Custom licenseJul 21, 2026 · metrics 1.13.0
PyPI
67Moderatehealth index
elkins/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1↓ 3,758/moJul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI
63Moderatehealth index
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
61Moderatehealth index
elkins-lab/synth-saxs
A lightweight Python library for simulating Small-Angle X-ray Scattering (SAXS) profiles from protein coordinates, with Jupyter Notebook examples.
Python★ 1↓ 3,502/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
60Moderatehealth index
Electrostatics/mmcif_pdbx
Yet another version of PDBx/mmCIF Python implementation
Python★ 9Jul 15, 2026
CC0-1.0Jul 15, 2026 · metrics 1.13.0
PyPI
60Moderatehealth index
elkins-lab/diff-biophys
Differentiable biophysical modeling in JAX (SAXS, NMR, CD), with Jupyter Notebook examples.
Python★ 0Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
59Moderatehealth index
elkins-lab/synth-nmr
NMR spectroscopy calculations for protein structures. Jupyter Notebook tutorials are available to visualize the concepts.
Python★ 2Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
elkins-lab/diff-ensemble
Differentiable VAE framework for predicting protein structural ensembles (IDPs) consistent with SAXS and NMR data. Built on JAX/Flax.
Python★ 1↓ 158/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
elkins-lab/resonance-flow
JAX-native differentiable protein folding framework integrating experimental NMR constraints (RDCs) and biophysical "self-correction." Several Jupyter Notebooks visualize the concepts.
Python★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
53Moderatehealth index
electrostatics/apbs
Software for biomolecular electrostatics and solvation calculations
C · Python · MATLAB★ 134Jul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0
PyPI
48At riskhealth index
elkins-lab/synth-dynamics
Fast Langevin dynamics engine using the Anisotropic Network Model (ANM) for rapid protein conformational ensemble generation.
Python · Shell★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
35At riskhealth index
electrostatics/go2pdb
Extract PDB entries annotated with specific GO codes
Python · Jupyter Notebook★ 2↓ 998/moJul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0