PyPI
cytomining/pycytominer
Python package for image-based profiling
BSD-3-ClauseSep 20, 2026 · metrics 2.10.0
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#microscopy
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
15 records
PyPI
deepinv/deepinv
DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning
BSD-3-ClauseSep 13, 2026 · metrics 2.10.0
PyPI
bioio-devs/bioio
Image reading, metadata management, and image writing for Microscopy images in Python
BSD-3-ClauseOct 13, 2026 · metrics 2.10.0
PyPI
hyperspy/hyperspy
Multidimensional data analysis
GPL-3.0Sep 5, 2026 · metrics 2.10.0
PyPI
computational-cell-analytics/micro-sam
Segment Anything for Microscopy
MITSep 11, 2026 · metrics 2.10.0
PyPI · npm
LiberTEM/LiberTEM
Open pixelated STEM framework
MITAug 23, 2026 · metrics 2.10.0
npm
ImagingDataCommons/dicom-microscopy-viewer
Web-based DICOM slide microscopy viewer library
MITSep 18, 2026 · metrics 2.10.0
PyPI
tlambert03/nd2
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
BSD-3-ClauseSep 29, 2026 · metrics 2.10.0
PyPI
bioio-devs/bioio-lif
A BioIO reader plugin for reading LIF (Leica Image File) images.
BSD-3-ClauseOct 14, 2026 · metrics 2.10.0
PyPI
Dana-Farber-AIOS/pathml
Tools for computational pathology
GPL-2.0Sep 5, 2026 · metrics 2.10.0
PyPI
OpenHCSDev/openhcs
Typed, reproducible high-content microscopy workflows across GUI, Python, CellProfiler, Napari/Fiji, GPU, and local MCP agents.
MITSep 18, 2026 · metrics 2.10.0
PyPI
BanerjeeLab-repertoire/pycat-napari
Python Condensate Analysis Toolbox (PyCAT) for bio-image analysis, especially biomolecular condensates and fluorescence microscopy images.
Custom licenseOct 20, 2026 · metrics 2.10.0
Go · PyPI
WSILabs/opentile-go
Go library for reading whole-slide pathology images — raw compressed-tile extraction and decoded region reading across 11 WSI formats (Aperio SVS, Hamamatsu NDPI, Philips, OME-TIFF, DICOM WSI, and more).
Apache-2.0Sep 6, 2026 · metrics 2.10.0
PyPI
pycroscopy/pycroscopy
Scientific analysis of nanoscale materials imaging data
MITSep 13, 2026 · metrics 2.10.0
PyPI
albumentations-team/albumentations
Fast and flexible image augmentation library. Paper about the library: https://www.mdpi.com/2078-2489/11/2/125
MITSep 17, 2026 · metrics 2.10.0