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#nextflow

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

4 records
Tagged “nextflow”Ranked by health index
PyPI
61Moderatehealth index
CDCgov/tostadas
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Python · Nextflow · Batchfile★ 29Jul 18, 2026
Apache-2.0Jul 18, 2026 · metrics 1.13.0
PyPI · npm
58Moderatehealth index
haqaliz/contig
An agentic bioinformatics analyst: it runs the analysis on your own compute, self-heals failures, verifies the output, and returns a reproducible result.
Python · TypeScript★ 0↓ 0/moJul 14, 2026
Apache-2.0Jul 14, 2026 · metrics 1.13.0
49At riskhealth index
beiko-lab/arete
AMR/VF LGT focused bacterial genomics analysis workflow
Python · Nextflow★ 28Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0