PyPI
biopython/biopython
Official git repository for Biopython (originally converted from CVS)
Custom licenseAug 28, 2026 · metrics 2.10.0
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Catalogue tag
#protein-structure
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
24 records
PyPI
BradyAJohnston/MolecularNodes
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
GPL-3.0Sep 8, 2026 · metrics 2.10.0
PyPI
haddocking/protein-quest
Python package to search/retrieve/filter proteins and protein structures
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI · npm
project-gemmi/gemmi
macromolecular crystallography library and utilities
MPL-2.0Sep 9, 2026 · metrics 2.10.0
PyPI
haddocking/protein-detective
Python package to detect proteins in EM density maps.
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
abhishektiwari/hbat
HBAT 2: A Python Package to analyse Hydrogen Bonds and Other Non-covalent Interactions in Macromolecular Structures https://hbat-web.abhishek-tiwari.com
MITSep 16, 2026 · metrics 2.10.0
PyPI
sokrypton/ColabFold
Making Protein folding accessible to all!
MITSep 10, 2026 · metrics 2.10.0
PyPI
elkins-lab/synth-pdb
Generate realistic PDB files with mixed secondary structures for testing, education and bioinformatics tool development. Jupyter Notebook tutorials are available to visualize the concepts..
MITSep 9, 2026 · metrics 2.10.0
PyPI
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
—
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Custom licenseSep 10, 2026 · metrics 2.10.0
PyPI
jwohlwend/boltz
Official repository for the Boltz biomolecular interaction models
MITAug 28, 2026 · metrics 2.10.0
PyPI
PDB-REDO/libcifpp
Library containing code to manipulate mmCIF and PDB files
BSD-2-ClauseOct 18, 2026 · metrics 2.10.0
PyPI
amckenna41/protPy
Calculating a range of protein descriptors using their physicochemical, biological and structural properties 🔬.
MITOct 19, 2026 · metrics 2.10.0
PyPI
mooreneural/ProteinTensor
AI-native tensor format (.ptt) for structural biology ML. Convert a protein/nucleic-acid/ligand structure or sequence once; load backbone, MSA, ESM embeddings, sparse pair features, and ligand pockets with zero parsing. Feeds Boltz-2 (verified), AlphaFold 3, Chai-1, Nesso. Zarr-backed, PyTorch/JAX, streams from S3/GCS.
MITSep 8, 2026 · metrics 2.10.0
PyPI
a-r-j/ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
MITSep 8, 2026 · metrics 2.10.0
npm
juliocesar-io/nano-protein-viewer-react
React component for visualizing protein structures with the Mol* framework.
MITSep 8, 2026 · metrics 2.10.0
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kliment-olechnovic/voronota
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
MITOct 18, 2026 · metrics 2.10.0
crates.io
caltechmsc/dreid-pack
A high-performance, pure Rust library for full-atom protein side-chain packing using the DREIDING force field, Goldstein+Split DEE, and tree-decomposition DP—with native protein–ligand and protein–nucleic acid interface support.
MITSep 10, 2026 · metrics 2.10.0
PyPI
a-r-j/CPDB
Cython implementation of PDB -> DataFrame parsing
MITSep 8, 2026 · metrics 2.10.0
PyPI
AMarinhoSN/FleXgeo2
Compute differential geometry descriptors for protein conformational ensembles
Apache-2.0Sep 8, 2026 · metrics 2.10.0
PyPI
ShintaroMinami/PyDSSP
A simplified implementation of DSSP algorithm for PyTorch and NumPy
MITSep 9, 2026 · metrics 2.10.0
PyPI · npm
smartsbio/smarts-bio-jupyterlab
No repository description published.
MITSep 9, 2026 · metrics 2.10.0
PyPI
samberry19/bioviper
Enhancements to Biopython for working with biological data
MITSep 9, 2026 · metrics 2.10.0
PyPI
SBRG/ssbio
A Python framework for structural systems biology
MITSep 9, 2026 · metrics 2.10.0