原始 JSON 报告 机器可读
{
"data": {
"repo": {
"topics": [
"bioinformatics-pipeline",
"crispr",
"crispr-design",
"guide-rna-library",
"python3",
"r-markdown",
"snakemake",
"workflow",
"snakemake-workflow"
],
"is_fork": false,
"size_kb": 855,
"has_wiki": true,
"homepage": null,
"languages": {
"R": 31256,
"Python": 5723
},
"pushed_at": "2026-07-14T10:57:20Z",
"created_at": "2023-04-05T07:31:47Z",
"owner_type": "Organization",
"updated_at": "2026-07-14T10:57:16Z",
"description": "A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "main",
"license_spdx_raw": "MIT",
"primary_language": "R",
"significant_languages": [
"R",
"Python"
]
},
"owner": {
"blog": "mpusp.github.io",
"name": "Max Planck Unit for the Science of Pathogens",
"type": "Organization",
"login": "MPUSP",
"company": null,
"location": "Berlin, Germany",
"followers": 10,
"avatar_url": "https://avatars.githubusercontent.com/u/81688252?v=4",
"created_at": "2021-03-31T11:34:00Z",
"is_verified": null,
"public_repos": 21,
"account_age_days": 1942
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": true
},
"activity": {
"releases": [
{
"tag": "v1.7.2",
"kind": "patch",
"published_at": "2026-07-14T10:57:20Z"
},
{
"tag": "v1.7.1",
"kind": "patch",
"published_at": "2026-04-27T13:42:48Z"
},
{
"tag": "v1.7.0",
"kind": "minor",
"published_at": "2026-03-20T19:12:48Z"
},
{
"tag": "v1.6.1",
"kind": "patch",
"published_at": "2026-03-06T07:29:06Z"
},
{
"tag": "v1.6.0",
"kind": "minor",
"published_at": "2026-03-05T12:31:44Z"
},
{
"tag": "v1.5.5",
"kind": "patch",
"published_at": "2026-02-11T08:43:22Z"
},
{
"tag": "v1.5.4",
"kind": "patch",
"published_at": "2025-11-14T10:33:36Z"
},
{
"tag": "v1.5.3",
"kind": "patch",
"published_at": "2025-11-13T15:33:03Z"
},
{
"tag": "v1.5.2",
"kind": "patch",
"published_at": "2025-11-13T15:17:47Z"
},
{
"tag": "v1.5.1",
"kind": "patch",
"published_at": "2025-11-04T13:48:56Z"
},
{
"tag": "v1.5.0",
"kind": "minor",
"published_at": "2025-11-04T12:48:25Z"
},
{
"tag": "v1.4.0",
"kind": "minor",
"published_at": "2024-12-16T09:01:01Z"
},
{
"tag": "v1.3.0",
"kind": "minor",
"published_at": "2024-09-23T12:00:49Z"
},
{
"tag": "v1.2.0",
"kind": "minor",
"published_at": "2024-02-21T07:58:15Z"
},
{
"tag": "v1.1.0",
"kind": "minor",
"published_at": "2024-01-12T15:03:30Z"
},
{
"tag": "v1.0.0",
"kind": "major",
"published_at": "2023-08-02T14:12:01Z"
}
],
"recent_commits": [
{
"oid": "8e6116a7eca3d8961510ac8c8522f86dae904a13",
"body": "chore(main): release 1.7.2",
"is_bot": false,
"headline": "Merge pull request #79 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-07-14T10:57:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c38bbb6ed160541d91d15286848a728617e6ddbc",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.7.2",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-07-14T10:56:42Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "827c2a4ff3ee12b9067dd43b3629d04a350ab1e2",
"body": "fix: container directive and env updates",
"is_bot": false,
"headline": "Merge pull request #78 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-07-14T10:56:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5550a5a7fb9580a5583c9c18ed8ed34fd2849276",
"body": null,
"is_bot": false,
"headline": "fix: comments, formatting",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-07-14T10:48:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5855f392b2c10b6aa47911b087f92283481bab6",
"body": null,
"is_bot": false,
"headline": "fix: container directive and env updates",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-07-13T14:11:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a85252e6122ac694b391de4c3e39bec9f6b3fdbb",
"body": "chore(main): release 1.7.1",
"is_bot": false,
"headline": "Merge pull request #76 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-04-27T13:42:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4e644b20f33c5e8cf2bfbb7963186e8ad8bd23cd",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.7.1",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-04-27T13:41:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5617a0d16038cc1de7da01686784bc894aa36277",
"body": "fix: reverted deployment action to main",
"is_bot": false,
"headline": "Merge pull request #75 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-04-27T13:41:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b5fe5e8f663b46c4156071beca86c042b8d684f4",
"body": null,
"is_bot": false,
"headline": "fix: reverted deployment action to main",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-04-27T13:29:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0aa40e95e5a2a054a2a6683d910cb0d6534d14cb",
"body": "fix: test updated apptainer deployment wf",
"is_bot": false,
"headline": "Merge pull request #73 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-04-24T09:32:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7e87a3f2f17149be857376d82155d4848a2037e",
"body": null,
"is_bot": false,
"headline": "fix: test updated apptainer deployment wf",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-04-24T09:21:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "959b1d27c1cb23a7363d4da31b5131a57a5dbc08",
"body": "chore(main): release 1.7.0",
"is_bot": false,
"headline": "Merge pull request #72 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-20T19:12:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f1b0ec5a94ddea1a1b9bbe68927a045bae7a9e37",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.7.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-03-20T19:02:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9a2a813c975c0822defbd484afbc7d6a0a894d1f",
"body": "feat: added schema; update docs",
"is_bot": false,
"headline": "Merge pull request #71 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-20T19:02:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0b6e532f49a01edfc96fe8dc250288cb2c2106e9",
"body": "Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>",
"is_bot": false,
"headline": "Apply suggestions from code review",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-20T18:45:23Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "af8aa3c4210458211ca2efc99b78f5d0f1c691da",
"body": null,
"is_bot": false,
"headline": "feat: added schema; update docs",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-20T18:22:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e3cb5e93ccd57e469f56b8c27e3efbbf346b50b2",
"body": "chore(main): release 1.6.1",
"is_bot": false,
"headline": "Merge pull request #69 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-06T07:28:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cb3ac310d4069d4c76a452cc9f0e571b51868a09",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.6.1",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-03-06T07:23:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b70b4673aabcdcf4eb150df34870689653980abb",
"body": "fix: small changes to README and CI workflows",
"is_bot": false,
"headline": "Merge pull request #68 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-06T07:23:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "42897ec6cc2a85033cd62c0065bbc16e2901a281",
"body": null,
"is_bot": false,
"headline": "fix: review comments",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-06T07:13:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3310c71b6d3899e076b6d6d81e65ebda1149b07",
"body": null,
"is_bot": false,
"headline": "fix: test names for external CI workflows",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-06T06:58:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f6734143a592dbf6a2945fb3608d61cc8ec34bcd",
"body": null,
"is_bot": false,
"headline": "fix: update Readme",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-06T06:58:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d576b5ba47e0a59263628b4a605dfa8ffa15512c",
"body": "chore(main): release 1.6.0",
"is_bot": false,
"headline": "Merge pull request #66 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-05T12:31:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b6c5f9aba48055aad7202b241d4b5e62340616a7",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.6.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-03-05T12:26:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55f0845aef05c7d066dc7fc5f7ebd2ed38f38340",
"body": "fix: added missing conf option",
"is_bot": false,
"headline": "Merge pull request #65 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-05T12:25:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9884a99e691cae9aa5c5c1415466f3ac580e1620",
"body": null,
"is_bot": false,
"headline": "fix: updated license",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-05T12:07:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "205f6fdb5dd5ae465971cf1368d06be483392b03",
"body": null,
"is_bot": false,
"headline": "feat: attempt to replace individual GH workflows with reusable ones",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-03-05T11:53:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7e37bc8b9b4a8c8c7dd970bc1705e9bbd9626a34",
"body": null,
"is_bot": false,
"headline": "fix: added missing conf option",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-02-17T14:44:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "56a60e9cee05bee085f23e7b7f3ef9c425b88720",
"body": "chore(main): release 1.5.5",
"is_bot": false,
"headline": "Merge pull request #64 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-02-11T08:43:10Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "009442749308cdf5341c309591ac6d22bdb305d6",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.5",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2026-02-11T08:41:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4561ea7f96568ecd0665ce2877d1ea34ef019dab",
"body": "fix: update actions workflows",
"is_bot": false,
"headline": "Merge pull request #63 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-02-11T08:41:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e3498d513631928b0b56774d707bfbcccd38be41",
"body": "Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>",
"is_bot": false,
"headline": "fix: simplify regex",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2026-02-11T08:28:53Z",
"body_truncated": false,
"is_coding_agent": true
},
{
"oid": "a89b8de4160666e33d96de3203009f04c4008407",
"body": null,
"is_bot": false,
"headline": "fix: update actions workflows",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2026-02-11T07:55:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff31c8f60ab406ad59842f5d9339d1d39c26e5d2",
"body": "chore(main): release 1.5.4",
"is_bot": false,
"headline": "Merge pull request #60 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T10:33:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5ba390dfc9d3228d98f1ece490b6ef66899af539",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.4",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2025-11-14T09:58:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0333ebbde1222c2176eb3b273f4f1192663db288",
"body": "fix: removed pushing a tagged container, only using latest",
"is_bot": false,
"headline": "Merge pull request #62 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T09:58:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e36c6c8448d26a538eeec4094a50882a5595d9bb",
"body": null,
"is_bot": false,
"headline": "fix: removed pushing a tagged container, only using latest",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T09:57:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0a6572defefe524450862d2d6734e26aa1c49e1e",
"body": "fix: more tag parsing",
"is_bot": false,
"headline": "Merge pull request #61 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T09:37:56Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3b36cdbce7e21ae4fc57b1dbecb040333c604d67",
"body": null,
"is_bot": false,
"headline": "fix: more tag parsing",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T09:36:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "534c18d304af19a42121d9c1a939333b08e82320",
"body": "fix: another attempt to trigger on release and extract correct tag",
"is_bot": false,
"headline": "Merge pull request #59 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T08:54:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e221191e3cb5950200a9ff610731a20510ac3e8c",
"body": null,
"is_bot": false,
"headline": "fix: another attempt to trigger on release and extract correct tag",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-14T08:45:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3678c3f135d566b2ebf8a8aee9d1e614e565d36f",
"body": "chore(main): release 1.5.3",
"is_bot": false,
"headline": "Merge pull request #58 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:32:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc2a69a7af6b9c3bde44a75bf4b570d06c5cc758",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.3",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2025-11-13T15:31:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "09f0432cf983393ae3bbd55b620784f999599a2f",
"body": "fix: workflow trigger on release and tag",
"is_bot": false,
"headline": "Merge pull request #57 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:31:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5475f4152c38ff6f987f031d7d8b7ed0558f8e42",
"body": null,
"is_bot": false,
"headline": "fix: workflow trigger on release and tag",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:30:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9eb66302b072a35510f2e535347ae82865ea9658",
"body": "chore(main): release 1.5.2",
"is_bot": false,
"headline": "Merge pull request #51 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:17:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "42a60cb53ccf3ab2bd0ce4ac91967ea07cefc345",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.2",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2025-11-13T15:16:47Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ff8ef6f72176a03875134ba1b747a8c1d415df5e",
"body": "fix: workflow trigger on release and tag",
"is_bot": false,
"headline": "Merge pull request #56 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:16:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4fd3251a3ac67e84b4d49b3474a28e9471806471",
"body": null,
"is_bot": false,
"headline": "fix: workflow trigger on release and tag",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T15:13:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c58ab981fbbb222c1c8af1f6b1808bbb1869b705",
"body": "fix: added write package permission to workflow",
"is_bot": false,
"headline": "Merge pull request #55 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T07:50:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a147e0b604e61a4b416c0383b0d1d981cc0ec34d",
"body": null,
"is_bot": false,
"headline": "fix: added write package permission to workflow",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T07:48:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "db846c78dade795182fbb94c5092e381d66190c4",
"body": "fix: lower case repo name",
"is_bot": false,
"headline": "Merge pull request #54 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T07:12:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cffe59bb43040f5b1c766c3d3a3426f62b7ec10a",
"body": null,
"is_bot": false,
"headline": "fix: lower case repo name",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-13T07:10:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "65cbe9e84e534604f2f50e259b773df056730621",
"body": "fix: added missing cores option",
"is_bot": false,
"headline": "Merge pull request #53 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T14:50:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9c4d86601fc545efa338d89df1edec69747f0a70",
"body": null,
"is_bot": false,
"headline": "fix: further modifications to workflow",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T14:49:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cfe21bd0164037aed8bd5497e4aebf5b1cd63833",
"body": null,
"is_bot": false,
"headline": "fix: added missing cores option",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T14:37:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3adb000f1bc9242b60df414ed69355ff5c78dddd",
"body": "fix: added apptainer source temporarily, switch to latest tag",
"is_bot": false,
"headline": "Merge pull request #52 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T14:29:16Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "641a57849d04a7b5d2d940a99612859b2a0b7001",
"body": null,
"is_bot": false,
"headline": "fix: prevent failing when no NTC guide has any off targets",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T14:15:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b2e72a6ac3173fda6d7f39f3007c20149129b07c",
"body": null,
"is_bot": false,
"headline": "fix: added apptainer source temporarily, switch to latest tag",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T12:57:14Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e24b24f971ffe32e5de945ea655a3ecda78f222",
"body": "fix: apptainer trigger update",
"is_bot": false,
"headline": "Merge pull request #50 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T11:05:06Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "541fa6241203afa583fb432c203adbaf1eeed355",
"body": null,
"is_bot": false,
"headline": "fix: apptainer trigger update",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-12T11:01:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "08e0da439da148f0ce438e6690204f2151069f3c",
"body": "chore(main): release 1.5.1",
"is_bot": false,
"headline": "Merge pull request #49 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T13:48:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ad838c95c0364f4cd0da44eb318837a57caee111",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.1",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2025-11-04T13:42:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "89a8f2a942ee5e8737e07c3d94418a5f9497ac7e",
"body": "fix: attempt to trigger apptainer wf",
"is_bot": false,
"headline": "Merge pull request #48 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T13:42:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fb9dcb1d62e224c9e1deddb4e81dfe82d3d945be",
"body": null,
"is_bot": false,
"headline": "fix: attempt to trigger apptainer wf",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T13:21:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d06516645b94c94fc81a0659b5ad7c8786206c94",
"body": "chore(main): release 1.5.0",
"is_bot": false,
"headline": "Merge pull request #47 from MPUSP/release-please--branches--main",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T12:48:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "69b7f37224f3e661d0a58b152330a79bc975c0a3",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.5.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2025-11-04T12:47:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aac8bc19bddfb19eb56acde23a56a12213420077",
"body": "feat: minor actions and rules updates",
"is_bot": false,
"headline": "Merge pull request #46 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T12:47:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "86c5a9346eb36fb5333b7094800fdfb0adf0d5b7",
"body": null,
"is_bot": false,
"headline": "feat: github actions workflow to automatically deploy apptainer to ghcr",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T12:36:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9ab4cd56306a305b4f6387e44c53c59e50f54ca2",
"body": null,
"is_bot": false,
"headline": "fix: cores for report",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-04T12:09:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "780489b514299d4e4cf83538d3cc3b880997beee",
"body": null,
"is_bot": false,
"headline": "fix: enabled pulling of correct container image again",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-03T13:13:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ecbcdebfa7acb574f95b6d239ec1a41ee47bfbc2",
"body": null,
"is_bot": false,
"headline": "update docs",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-03T13:00:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da5e7e5b283e03e1aacc91c6ada1eadc3c6ba8de",
"body": null,
"is_bot": false,
"headline": "fix: missing input for gh actions test",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-03T13:00:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ebdb4785601156e0b9cc51101286bb217e70b1d1",
"body": null,
"is_bot": false,
"headline": "fix: updated rules, replaced 1 with wrapper",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-03T09:55:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2912669b7f9243f06deb00983fb1537d103afcb3",
"body": null,
"is_bot": false,
"headline": "fix: update github actions",
"author_name": "m-jahn",
"author_login": "m-jahn",
"committed_at": "2025-11-03T07:21:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "aef5bcba69277ae7353f36fd1ae6952a8f54cab4",
"body": "chore: release 1.4.0",
"is_bot": false,
"headline": "Merge pull request #45 from MPUSP/release-v1.4.0",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-16T09:00:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "175c4aff5bfe18d255ce7eae92c7ab2e6fb80a96",
"body": null,
"is_bot": true,
"headline": "chore: release 1.4.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2024-12-16T08:59:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "28f769713bd3cd3faa94eba7c85c15bddd3d8245",
"body": "feat: release v1.4.0",
"is_bot": false,
"headline": "Merge pull request #43 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-16T08:59:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "393ce3da9565368e23452d7193cee827c56addb6",
"body": null,
"is_bot": false,
"headline": "fix: slight changes to report structure",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-16T07:40:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b18aea310dbcdb4e00f2e454f88927c640fe8fa6",
"body": null,
"is_bot": false,
"headline": "fix: updated GH actions status badge",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-13T13:59:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cdc47ca78fc3c48d7caa7cbf74bbed9e2e156e3d",
"body": null,
"is_bot": false,
"headline": "fix: update GH actions to latest versions",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-13T09:13:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ed4d4c13bd946152a6814ad0a17d536f9e247721",
"body": "…gularity; closes #41",
"is_bot": false,
"headline": "fix: update for snakemake 8 commands; removed 1 rule failing with sin…",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-13T09:03:34Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3d448b95e5ceb005163e06643dcf988997d6a72",
"body": "…scripts for singularity compatibility, closes #42",
"is_bot": false,
"headline": "feat: added support for fasta export, moved utility function to main …",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-12-13T07:58:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0b484b4b228e90017505d40c1931ef0c3a830867",
"body": "…ponents--snakemake-crispr-guides\n\nchore(main): release 1.3.0",
"is_bot": false,
"headline": "Merge pull request #33 from MPUSP/release-please--branches--main--com…",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-23T12:00:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "44cfb7ea6e0c5b0f8a647f311c1663a40c8fa67a",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.3.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2024-09-23T11:58:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "88b709316afcff0f7ad86cd8545c4d36dd6de66f",
"body": "fix: minor changes to envs and bug fixes",
"is_bot": false,
"headline": "Merge pull request #39 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-23T11:58:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d893c6be7f7315646b835139756d68d5c58d9bba",
"body": null,
"is_bot": false,
"headline": "fix: bump container version for next release",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-20T06:52:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "516a728c70af8e7c001851d6e10fafb85b00be88",
"body": null,
"is_bot": false,
"headline": "feat: minor updates to README",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-20T06:47:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0362a0bea66e1e38bdd698f489e2f7abdf27df70",
"body": null,
"is_bot": false,
"headline": "fix: removed conda default channel from envs, closes #38",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-20T06:30:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d26fc02b8384528373aad866434571225ea02512",
"body": null,
"is_bot": false,
"headline": "fix: bug when restriction sites is NULL",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-09-20T06:29:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "735bb0bce2fe5a2a660a2f46a8d3bfbf3abac7ab",
"body": "fix: smaller issues",
"is_bot": false,
"headline": "Merge pull request #37 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-08-26T08:59:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "675747d76d980f01514fb8d420dfb3312a12ca29",
"body": null,
"is_bot": false,
"headline": "fix: handling restriction sites, closes #36",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-08-21T08:45:25Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4ab8e6a86ab349fc58e1f1cc7c21701776602ea2",
"body": "fix: minor issues",
"is_bot": false,
"headline": "Merge pull request #35 from MPUSP/dev",
"author_name": "Rina Ahmed-Begrich",
"author_login": "rabioinf",
"committed_at": "2024-07-24T09:13:26Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8b7b5bbf2da92c1733cf77eb35a90b68c5344a52",
"body": null,
"is_bot": false,
"headline": "fix: minor issues, closes #34",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-06-10T10:33:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5d78ac623f04918e5ac56e6fc6425a1f8fdb0f0c",
"body": "feat: changed license to MIT, closes #30",
"is_bot": false,
"headline": "Merge pull request #32 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-04-11T08:38:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c1627fb059252a07b2ce506a50be910e202c3dae",
"body": null,
"is_bot": false,
"headline": "feat: changed license to MIT, closes #30",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-03-06T10:41:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e3f0da64645c3520493d65475c0943799e8b69eb",
"body": "…ponents--snakemake-crispr-guides\n\nchore(main): release 1.2.0",
"is_bot": false,
"headline": "Merge pull request #27 from MPUSP/release-please--branches--main--com…",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-02-21T07:57:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "64f105d07019bd3483594dd8d15ee4550fcc83b0",
"body": null,
"is_bot": true,
"headline": "chore(main): release 1.2.0",
"author_name": "github-actions[bot]",
"author_login": "github-actions[bot]",
"committed_at": "2024-02-21T07:49:44Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "eaea7ac6e23083fe07f7a3a7049eb5f28c56a93f",
"body": "feat: various fixes for improved tiling function",
"is_bot": false,
"headline": "Merge pull request #29 from MPUSP/dev",
"author_name": "Michael Jahn",
"author_login": "m-jahn",
"committed_at": "2024-02-21T07:49:24Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "da7135cc0d92376e69047343280106a388fb9d44",
"body": null,
"is_bot": false,
"headline": "fix: overhauled plotting of intergenic regions, closes #28",
"author_name": "jahn",
"author_login": "m-jahn",
"committed_at": "2024-02-07T13:31:44Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 16,
"commits_last_year": 75,
"latest_release_at": "2026-07-14T10:57:20Z",
"latest_release_tag": "v1.7.2",
"releases_from_tags": false,
"days_since_last_push": 11,
"active_weeks_last_year": 9,
"days_since_latest_release": 11,
"mean_days_between_releases": 28
},
"community": {
"has_readme": true,
"has_license": true,
"has_description": true,
"has_contributing": false,
"health_percentage": 37,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 2,
"stars": 8,
"watchers": 1,
"fork_history": {
"days": [
{
"date": "2023-11-07",
"count": 1
},
{
"date": "2024-03-07",
"count": 1
}
],
"complete": true,
"collected": 2,
"total_forks": 2
},
"star_history": null,
"open_issues_and_prs": 1
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": false,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [],
"advisories": {
"error": "No resolved dependencies to assess",
"scope": "repository_graph",
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [],
"dependencies": [],
"all_dependencies": {
"error": null,
"source": "github-sbom",
"packages": [],
"collected": true,
"truncated": false,
"total_count": 0,
"direct_count": 0,
"indirect_count": 0
}
},
"maintainership": {
"issues": {
"open_prs": 0,
"merged_prs": 47,
"open_issues": 1,
"closed_ratio": 0.966,
"closed_issues": 28,
"closed_unmerged_prs": 3
},
"bus_factor": 1,
"bot_contributors": 1,
"top_contributors": [
{
"type": "User",
"login": "m-jahn",
"commits": 170,
"avatar_url": "https://avatars.githubusercontent.com/u/32667667?v=4"
},
{
"type": "User",
"login": "rabioinf",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/21038107?v=4"
}
],
"contributors_sampled": 2,
"top_contributor_share": 0.994
},
"quality_signals": {
"has_ci": true,
"has_tests": false,
"ci_workflows": [
"conventional-prs.yml",
"deploy-apptainer.yml",
"release-please.yml",
"snakemake-tests.yml"
],
"has_docs_dir": false,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 4,
"reason": "branch protection is not maximal on development and all release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 5,
"reason": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 0,
"reason": "Found 0/6 approved changesets -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 4 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 8,
"reason": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": null,
"reason": "packaging workflow not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "8e6116a7eca3d8961510ac8c8522f86dae904a13",
"ran_at": "2026-07-25T14:09:05Z",
"aggregate_score": 4.4,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"ci_last_run_at": "2026-07-14T11:08:05Z",
"oldest_open_prs": [],
"last_merged_pr_at": "2026-07-14T10:57:11Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 44,
"created_at": "2024-12-13T14:08:18Z",
"last_comment_at": "2025-12-11T10:38:26Z",
"last_comment_author": "m-jahn"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/MPUSP/snakemake-crispr-guides",
"host": "github.com",
"name": "snakemake-crispr-guides",
"owner": "MPUSP"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"security": 43,
"vitality": 76,
"community": 31,
"governance": 52,
"engineering": 44
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 76,
"weight": 0.22,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"commits_last_year": 75,
"human_commit_share": 0.86,
"days_since_last_push": 11,
"active_weeks_last_year": 9
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 11 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 11
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "9/52 weeks with commits",
"points": 6.2,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 9
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "75 commits in the last year",
"points": 16.9,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 75
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"points": 8,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "excellent",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 100,
"inputs": {
"releases_count": 16,
"latest_release_tag": "v1.7.2",
"releases_from_tags": false,
"days_since_latest_release": 11,
"mean_days_between_releases": 28
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "16 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 16
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 11 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 11
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~28 days",
"points": 27,
"status": "met",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 28
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "excellent",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 11,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 11 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 11
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "at_risk",
"name": "Community & Adoption",
"value": 31,
"weight": 0.18,
"metrics": [
{
"key": "popularity",
"band": "critical",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 14,
"inputs": {
"forks": 2,
"stars": 8,
"watchers": 1,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "8 stars",
"points": 13.7,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 8
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "2 forks",
"points": 0,
"status": "missed",
"details": [
{
"code": "forks",
"params": {
"count": 2
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "1 watchers",
"points": 0,
"status": "missed",
"details": [
{
"code": "watchers",
"params": {
"count": 1
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "moderate",
"name": "Community health",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"has_readme": true,
"has_license": true,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 22.5,
"status": "met",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "moderate",
"name": "Sustainability & Governance",
"value": 52,
"weight": 0.24,
"metrics": [
{
"key": "maintainer_resilience",
"band": "critical",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 22,
"inputs": {
"bus_factor": 1,
"contributors_sampled": 2,
"top_contributor_share": 0.994
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "1 contributor(s) cover half of all commits",
"points": 9,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 1
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 99% of commits",
"points": 0.1,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 99
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "2 contributors",
"points": 2.7,
"status": "partial",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 2
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": null,
"notes": [],
"value": 81,
"inputs": {
"merged_prs": 47,
"open_issues": 1,
"closed_issues": 28,
"issue_closed_ratio": 0.966,
"closed_unmerged_prs": 3
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "97% of issues closed",
"points": 45.2,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 97
}
}
],
"max_points": 46.75
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "47/50 decided PRs merged",
"points": 36,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 47,
"decided": 50
}
}
],
"max_points": 38.25
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 0/6 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "moderate",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 58,
"inputs": {
"followers": 10,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "MPUSP",
"public_repos": 21,
"account_age_days": 1942
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "10 followers of MPUSP",
"points": 7.5,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 10,
"login": "MPUSP"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "21 public repos, account ~5 yr old",
"points": 20.4,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 21
}
},
{
"code": "account_age_years",
"params": {
"years": 5
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "at_risk",
"name": "Engineering Quality",
"value": 44,
"weight": 0.2,
"metrics": [
{
"key": "engineering_practices",
"band": "at_risk",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 34,
"inputs": {
"has_ci": true,
"has_tests": false,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "4 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 4
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
"points": 10,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"topics": [
"bioinformatics-pipeline",
"crispr",
"crispr-design",
"guide-rna-library",
"python3",
"r-markdown",
"snakemake",
"workflow",
"snakemake-workflow"
],
"has_wiki": true,
"homepage": null,
"has_readme": true,
"has_docs_dir": false,
"has_description": true
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 30,
"status": "met",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": "9 topics",
"points": 10,
"status": "met",
"details": [
{
"code": "topics_count",
"params": {
"count": 9
}
}
],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "at_risk",
"name": "Security",
"value": 43,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "at_risk",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Packaging, Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"packaging",
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 43,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 16,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 2,
"scorecard_aggregate": 4.4
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection is not maximal on development and all release branches",
"points": 3,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
"points": 1.2,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 0/6 approved changesets -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 4 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
"points": 6,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow not detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "excellent",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"review_only_matches": 0,
"assessed_self_published_locations": 5
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "critical",
"name": "AI Readiness",
"value": 16,
"weight": 0,
"metrics": [
{
"key": "ai_agent_context",
"band": "at_risk",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 40,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.977,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "84 of 86 human commits state their intent (structured subject or explanatory body)",
"points": 40,
"status": "met",
"details": [
{
"code": "legible_history",
"params": {
"legible": 84,
"sampled": 86
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "critical",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 4,
"inputs": {
"has_nix": false,
"has_tests": false,
"lockfiles": [],
"has_dockerfile": false,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0.02,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "2 of the last 100 commits agent-authored or agent-credited",
"points": 4,
"status": "partial",
"details": [
{
"code": "agent_authored_commits",
"params": {
"count": 2,
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "critical",
"name": "Code legibility for models",
"note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"manageable_file_sizes"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 1,
"inputs": {
"primary_language": "R",
"largest_source_bytes": null,
"source_files_sampled": 0,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "R without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "R"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "no source files detected",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_source_files",
"params": {}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
}
],
"metrics_version": "1.13.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
],
"report_type": "repository",
"generated_at": "2026-07-25T14:09:20.250969Z",
"schema_version": "0.27.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/m/MPUSP/snakemake-crispr-guides.svg",
"full_name": "MPUSP/snakemake-crispr-guides",
"license_state": "standard",
"license_spdx": "MIT"
}