Публічний реєстр
Звіт про здоров'я програмного забезпеченнясхема 0.27.0 · метрики 1.13.0 · 2026-07-25 14:09 UTC

MPUSP / snakemake-crispr-guides

A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.

R · PythonMIT★ 8 зірок⑂ 2 форкиз квіт. 2023 р.Переглянути на GitHub ↗

MPUSP/snakemake-crispr-guides має індекс здоров’я 50 зі 100, що відповідає смузі «Помірний». Найвищий показник — Vitality (76/100), найнижчий — AI Readiness (16/100). Останнє оновлення було 11 днів тому. Більшість нещодавньої роботи виконує один учасник.

50
загалом / 100
Помірний

Індекс здоров'я програмного забезпечення

Метрики згруповано у зважені категорії на шкалі 1–100. Загальна оцінка починається як їхнє середнє; коли публічні дані активують Політику юрисдикцій високого ризику, рейтинг коригується й отримує верхню межу 49 («Під ризиком»). Готовність до ШІ не входить до індексу.

50
Відмінний85-100Зразковий; відповідає практично всім перевіреним критеріям
Добрий70-84Здоровий; незначні прогалини
Помірний50-69Прийнятний, але з помітними прогалинами; рекомендовано перевірку
У зоні ризику30-49Суттєві слабкі місця; впровадження потребує обережності
Критичний1-29Серйозні проблеми (покинутий, єдиний мейнтейнер, без базової гігієни)
ЖиттєздатністьСпільнота тавпровадженняСталість таврядуванняІнженернаякістьБезпекаГотовність доШІ

Профіль оцінок

Кожна вісь — окрема категорія. Форма важить більше, ніж середнє: здоровий об'єкт заповнює всю фігуру, тоді як профіль із піками та провалами означає, що сила в одному вимірі маскує ризик в іншому.

Власність

10 підписників21 публічний репозиторійз бер. 2021 р.

За цим репозиторієм стоїть організація — спільна, підзвітна опіка, здатна пережити будь-якого окремого мейнтейнера.

Метрики за категоріями

Життєздатність

Чи живий проєкт — чи пишеться код і чи виходять релізи?

76Добрий · 22% загального індексу
Як обчислюється оцінка
28.8/36Свіжість push — останній push 11 дн. тому
6.2/36Ритм комітів — 9/52 тижнів із комітами
16.9/18Обсяг комітів — 75 комітів за останній рік
8/10OpenSSF Scorecard: Maintained — 9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8
Використані вхідні дані
commits_last_year75
human_commit_share0,86
days_since_last_push11
active_weeks_last_year9
Як обчислюється оцінка
27/27Випускає релізи — опубліковано 16 релізів
36/36Свіжість релізів — останній реліз 11 дн. тому
27/27Ритм релізів — реліз кожні ~28 дн.
0/10OpenSSF Scorecard: Signed-Releases — немає даних
Використані вхідні дані
releases_count16
latest_release_tagv1.7.2
releases_from_tagsні
days_since_latest_release11
mean_days_between_releases28
Виключено з оцінювання (немає даних або не застосовно): OpenSSF Scorecard: Signed-Releases. Залишкові ваги перенормовано.

Спільнота та впровадження

Чи має проєкт користувачів, завантаження, увагу та влаштовані умови для контриб’юторів?

31У зоні ризику · 18% загального індексу
Як обчислюється оцінка
13.7/60Зірки — 8 зірок
0/25Форки — 2 форків
0/15Спостерігачі — 1 спостерігачів
Використані вхідні дані
forks2
stars8
watchers1
growth_stateunverified
growth_factor_pct100
growth_unverified_reasonno_history
Як обчислюється оцінка
22.5/22.5README
22.5/22.5Ліцензія — визнана ліцензія (MIT)
0/18Настанови CONTRIBUTING
0/13.5Кодекс поведінки
0/7.2Шаблон issue
0/6.3Шаблон PR
Використані вхідні дані
has_readmeтак
has_licenseтак
has_contributingні
has_issue_templateні
has_code_of_conductні
has_pull_request_templateні

Сталість та врядування

Чи переживе проєкт своїх людей — бас-фактор, реактивність, хто за ним стоїть і як супроводжуються пакети?

52Помірний · 24% загального індексу
Як обчислюється оцінка
9/54Бас-фактор — на 1 контриб’ютор(ів) припадає половина всіх комітів
0.1/22.5Розподіл комітів — головний контриб’ютор — автор 99% комітів
2.7/13.5Широта контриб’юторів — 2 контриб’юторів
10/10OpenSSF Scorecard: Contributors — project has 4 contributing companies or organizations
Використані вхідні дані
bus_factor1
contributors_sampled2
top_contributor_share0,994
Як обчислюється оцінка
45.2/46.8Вирішення issue — закрито 97% issue
36/38.3Прийняття PR — злито 47/50 вирішених PR
0/15OpenSSF Scorecard: Code-Review — Found 0/6 approved changesets -- score normalized to 0
Використані вхідні дані
merged_prs47
open_issues1
closed_issues28
issue_closed_ratio0,966
closed_unmerged_prs3
Як обчислюється оцінка
30/30Підтримка власника — у власності організації
0/20Верифікований домен
7.5/25Охоплення власника — 10 підписників у MPUSP
20.4/25Послужний список — 21 публічних репозиторіїв, вік облікового запису ~5 р.
Використані вхідні дані
followers10
owner_typeOrganization
is_verified
owner_loginMPUSP
public_repos21
account_age_days1 942

Інженерна якість

Чи наявні базові інженерні практики та документація?

44У зоні ризику · 20% загального індексу

Інженерні практики

34У зоні ризику
Як обчислюється оцінка
24/24Процеси CI — 4 процес(ів) CI
0/24Наявні тести
0/16Конфігурація лінтера
0/9.6Pre-commit-хуки
0/6.4.editorconfig
10/20OpenSSF Scorecard: CI-Tests — 6 out of 12 merged PRs checked by a CI test -- score normalized to 5
Використані вхідні дані
has_ciтак
has_testsні
has_editorconfigні
has_linter_configні
has_precommit_configні

Документація

60Помірний
Як обчислюється оцінка
30/30README
0/25Каталог документації
0/15Сайт документації / домашня сторінка
10/10Опис репозиторію
10/10Теми — 9 тем
10/10Wiki
Використані вхідні дані
topicsbioinformatics-pipeline, crispr, crispr-design, guide-rna-library, python3, r-markdown, snakemake, workflow, snakemake-workflow
has_wikiтак
homepage
has_readmeтак
has_docs_dirні
has_descriptionтак

Безпека

Чи міцні видимі практики безпеки й ланцюга постачання, без непослабленої пов’язаності з юрисдикціями високого ризику?

43У зоні ризику · 16% загального індексу

Стан безпеки

43У зоні ризику
Як обчислюється оцінка
7.5/7.5Binary-Artifacts — no binaries found in the repo
3/7.5Branch-Protection — branch protection is not maximal on development and all release branches
1.2/2.5CI-Tests — 6 out of 12 merged PRs checked by a CI test -- score normalized to 5
0/2.5CII-Best-Practices — no effort to earn an OpenSSF best practices badge detected
0/7.5Code-Review — Found 0/6 approved changesets -- score normalized to 0
2.5/2.5Contributors — project has 4 contributing companies or organizations
10/10Dangerous-Workflow — no dangerous workflow patterns detected
0/7.5Dependency-Update-Tool — no update tool detected
0/5Fuzzing — project is not fuzzed
2.5/2.5Ліцензія — license file detected
6/7.5Maintained — 9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8
0/5Packaging — немає даних
0/5Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
0/5SAST — SAST tool is not run on all commits -- score normalized to 0
0/5Security-Policy — security policy file not detected
0/7.5Signed-Releases — немає даних
0/7.5Token-Permissions — detected GitHub workflow tokens with excessive permissions
7.5/7.5Vulnerabilities — 0 existing vulnerabilities detected
Використані вхідні дані
sourceopenssf_scorecard
checks_evaluated16
scorecard_versionv5.5.0
checks_inconclusive2
scorecard_aggregate4,4
Виключено з оцінювання (немає даних або не застосовно): packaging, signed_releases. Залишкові ваги перенормовано.

Готовність до ШІ

Наскільки репозиторій оснащений для розробки та супроводу за участі ШІ-агентів? Незалежний, експериментальний бейдж — вага 0.0, тож він подається окремо і не впливає на загальний індекс здоров'я.

16Критичний · 0% загального індексу
Як обчислюється оцінка
0/45Інструкції для агентів — немає CLAUDE.md / AGENTS.md / правил редактора
0/15Машиночитана документація (llms.txt)
40/40Читабельна історія комітів — намір зазначено у 84 з 86 людських комітів (структурований заголовок або пояснювальний текст)
Використані вхідні дані
has_llms_txtні
legible_history_share0,977
agent_instruction_files
agent_instruction_max_bytes
Як обчислюється оцінка
0/18Розгортання однією командою
0/22Автоматизовані тести
0/11Конфігурація лінтера / форматера
0/11Статична перевірка типів
0/10Відтворюване середовище
4/10Підтверджена практика роботи з агентами — 2 з останніх 100 комітів створено агентом або з його зазначенням
0/8Автоматизоване супроводження — автоматичних оновлень залежностей не виявлено
0/10OpenSSF Scorecard: Pinned-Dependencies — dependency not pinned by hash detected -- score normalized to 0
Використані вхідні дані
has_nixні
has_testsні
lockfiles
has_dockerfileні
typed_languageні
bootstrap_files
has_devcontainerні
has_linter_configні
typecheck_configs
agent_commit_share0,02
toolchain_manifests
dependency_bot_commit_share0
Як обчислюється оцінка
0/45Типізований код — R без конфігурації перевірки типів
0/55Керовані розміри файлів — файлів вихідного коду не виявлено
Використані вхідні дані
primary_languageR
largest_source_bytes
source_files_sampled0
oversized_source_files0
Виключено з оцінювання (немає даних або не застосовно): Керовані розміри файлів. Залишкові ваги перенормовано.

Ключові факти

8зірок GitHub
2контриб'юторів
75комітів за останні 12 місяців
11днів від останнього пушу
16релізів
1бас-фактор
1відкритих issue
пакетних екосистем

Попередження щодо збору даних

  • Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token

Докладніше

Історія зірок і форків 0 ★ / 2 ⇿
0Зірки
2Форки
2Релізи

Коли додано кожну зірку й форк — зібрано з GitHub і згруповано за днями. Кумулятивне зростання розміщено просто над денними додаваннями, з яких воно складається, тож їх видно одне проти одного: рівномірне органічне накопичення виглядає зовсім інакше, ніж різкий короткочасний сплеск. Там, де цю різницю можна виміряти, її подано як автентичність росту.

111222212023-112024-012024-03
Мажорні 0Мінорні 2Патчі 0
OpenSSF Scorecard 4.4 / 10
4.4сукупно

Незалежна, не прив'язана до інструментів оцінка безпеки від відкритого проєкту OpenSSF Scorecard. Кожна перевірка винагороджує практику безпеки, а не інструмент конкретного постачальника. Перевірки, які Scorecard не зміг визначити, позначено н/д і виключено з оцінки безпеки (вони ніколи не зараховуються як нуль).Scorecard v5.5.0 · 2026-07-25 14:09 UTC

10Binary-Artifactsno binaries found in the repo
4Branch-Protectionbranch protection is not maximal on development and all release branches
5CI-Tests6 out of 12 merged PRs checked by a CI test -- score normalized to 5
0CII-Best-Practicesno effort to earn an OpenSSF best practices badge detected
0Code-ReviewFound 0/6 approved changesets -- score normalized to 0
10Contributorsproject has 4 contributing companies or organizations
10Dangerous-Workflowno dangerous workflow patterns detected
0Dependency-Update-Toolno update tool detected
0Fuzzingproject is not fuzzed
10Licenselicense file detected
8Maintained9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8
н/дPackagingpackaging workflow not detected
0Pinned-Dependenciesdependency not pinned by hash detected -- score normalized to 0
0SASTSAST tool is not run on all commits -- score normalized to 0
0Security-Policysecurity policy file not detected
н/дSigned-Releasesno releases found
0Token-Permissionsdetected GitHub workflow tokens with excessive permissions
10Vulnerabilities0 existing vulnerabilities detected
Усі залежності 0

Повний розв'язаний набір залежностей із графа залежностей GitHub: 0 прямих і 0 непрямих (транзитивних) пакетів. Транзитивне замикання є повним, коли в репозиторії закомічено lockfile.

РеєстрПакетВерсіяЗв'язок
Сповіщення про залежності не оцінено

Звірка сповіщень не відбулася для цього звіту: No resolved dependencies to assess

Звіт у форматі JSON машиночитний
{
  "data": {
    "repo": {
      "topics": [
        "bioinformatics-pipeline",
        "crispr",
        "crispr-design",
        "guide-rna-library",
        "python3",
        "r-markdown",
        "snakemake",
        "workflow",
        "snakemake-workflow"
      ],
      "is_fork": false,
      "size_kb": 855,
      "has_wiki": true,
      "homepage": null,
      "languages": {
        "R": 31256,
        "Python": 5723
      },
      "pushed_at": "2026-07-14T10:57:20Z",
      "created_at": "2023-04-05T07:31:47Z",
      "owner_type": "Organization",
      "updated_at": "2026-07-14T10:57:16Z",
      "description": "A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.",
      "is_archived": false,
      "is_disabled": false,
      "license_spdx": "MIT",
      "default_branch": "main",
      "license_spdx_raw": "MIT",
      "primary_language": "R",
      "significant_languages": [
        "R",
        "Python"
      ]
    },
    "owner": {
      "blog": "mpusp.github.io",
      "name": "Max Planck Unit for the Science of Pathogens",
      "type": "Organization",
      "login": "MPUSP",
      "company": null,
      "location": "Berlin, Germany",
      "followers": 10,
      "avatar_url": "https://avatars.githubusercontent.com/u/81688252?v=4",
      "created_at": "2021-03-31T11:34:00Z",
      "is_verified": null,
      "public_repos": 21,
      "account_age_days": 1942
    },
    "license": {
      "state": "standard",
      "spdx_id": "MIT",
      "raw_spdx": "MIT",
      "file_present": true,
      "scorecard_found": true,
      "profile_has_license": true
    },
    "activity": {
      "releases": [
        {
          "tag": "v1.7.2",
          "kind": "patch",
          "published_at": "2026-07-14T10:57:20Z"
        },
        {
          "tag": "v1.7.1",
          "kind": "patch",
          "published_at": "2026-04-27T13:42:48Z"
        },
        {
          "tag": "v1.7.0",
          "kind": "minor",
          "published_at": "2026-03-20T19:12:48Z"
        },
        {
          "tag": "v1.6.1",
          "kind": "patch",
          "published_at": "2026-03-06T07:29:06Z"
        },
        {
          "tag": "v1.6.0",
          "kind": "minor",
          "published_at": "2026-03-05T12:31:44Z"
        },
        {
          "tag": "v1.5.5",
          "kind": "patch",
          "published_at": "2026-02-11T08:43:22Z"
        },
        {
          "tag": "v1.5.4",
          "kind": "patch",
          "published_at": "2025-11-14T10:33:36Z"
        },
        {
          "tag": "v1.5.3",
          "kind": "patch",
          "published_at": "2025-11-13T15:33:03Z"
        },
        {
          "tag": "v1.5.2",
          "kind": "patch",
          "published_at": "2025-11-13T15:17:47Z"
        },
        {
          "tag": "v1.5.1",
          "kind": "patch",
          "published_at": "2025-11-04T13:48:56Z"
        },
        {
          "tag": "v1.5.0",
          "kind": "minor",
          "published_at": "2025-11-04T12:48:25Z"
        },
        {
          "tag": "v1.4.0",
          "kind": "minor",
          "published_at": "2024-12-16T09:01:01Z"
        },
        {
          "tag": "v1.3.0",
          "kind": "minor",
          "published_at": "2024-09-23T12:00:49Z"
        },
        {
          "tag": "v1.2.0",
          "kind": "minor",
          "published_at": "2024-02-21T07:58:15Z"
        },
        {
          "tag": "v1.1.0",
          "kind": "minor",
          "published_at": "2024-01-12T15:03:30Z"
        },
        {
          "tag": "v1.0.0",
          "kind": "major",
          "published_at": "2023-08-02T14:12:01Z"
        }
      ],
      "recent_commits": [
        {
          "oid": "8e6116a7eca3d8961510ac8c8522f86dae904a13",
          "body": "chore(main): release 1.7.2",
          "is_bot": false,
          "headline": "Merge pull request #79 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-07-14T10:57:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c38bbb6ed160541d91d15286848a728617e6ddbc",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.7.2",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-07-14T10:56:42Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "827c2a4ff3ee12b9067dd43b3629d04a350ab1e2",
          "body": "fix: container directive and env updates",
          "is_bot": false,
          "headline": "Merge pull request #78 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-07-14T10:56:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5550a5a7fb9580a5583c9c18ed8ed34fd2849276",
          "body": null,
          "is_bot": false,
          "headline": "fix: comments, formatting",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-07-14T10:48:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d5855f392b2c10b6aa47911b087f92283481bab6",
          "body": null,
          "is_bot": false,
          "headline": "fix: container directive and env updates",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-07-13T14:11:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a85252e6122ac694b391de4c3e39bec9f6b3fdbb",
          "body": "chore(main): release 1.7.1",
          "is_bot": false,
          "headline": "Merge pull request #76 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-04-27T13:42:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4e644b20f33c5e8cf2bfbb7963186e8ad8bd23cd",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.7.1",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-04-27T13:41:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5617a0d16038cc1de7da01686784bc894aa36277",
          "body": "fix: reverted deployment action to main",
          "is_bot": false,
          "headline": "Merge pull request #75 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-04-27T13:41:19Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b5fe5e8f663b46c4156071beca86c042b8d684f4",
          "body": null,
          "is_bot": false,
          "headline": "fix: reverted deployment action to main",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-04-27T13:29:35Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0aa40e95e5a2a054a2a6683d910cb0d6534d14cb",
          "body": "fix: test updated apptainer deployment wf",
          "is_bot": false,
          "headline": "Merge pull request #73 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-04-24T09:32:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c7e87a3f2f17149be857376d82155d4848a2037e",
          "body": null,
          "is_bot": false,
          "headline": "fix: test updated apptainer deployment wf",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-04-24T09:21:53Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "959b1d27c1cb23a7363d4da31b5131a57a5dbc08",
          "body": "chore(main): release 1.7.0",
          "is_bot": false,
          "headline": "Merge pull request #72 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-20T19:12:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f1b0ec5a94ddea1a1b9bbe68927a045bae7a9e37",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.7.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-03-20T19:02:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9a2a813c975c0822defbd484afbc7d6a0a894d1f",
          "body": "feat: added schema; update docs",
          "is_bot": false,
          "headline": "Merge pull request #71 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-20T19:02:37Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0b6e532f49a01edfc96fe8dc250288cb2c2106e9",
          "body": "Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>",
          "is_bot": false,
          "headline": "Apply suggestions from code review",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-20T18:45:23Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "af8aa3c4210458211ca2efc99b78f5d0f1c691da",
          "body": null,
          "is_bot": false,
          "headline": "feat: added schema; update docs",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-20T18:22:23Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3cb5e93ccd57e469f56b8c27e3efbbf346b50b2",
          "body": "chore(main): release 1.6.1",
          "is_bot": false,
          "headline": "Merge pull request #69 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-06T07:28:54Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cb3ac310d4069d4c76a452cc9f0e571b51868a09",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.6.1",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-03-06T07:23:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b70b4673aabcdcf4eb150df34870689653980abb",
          "body": "fix: small changes to README and CI workflows",
          "is_bot": false,
          "headline": "Merge pull request #68 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-06T07:23:30Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "42897ec6cc2a85033cd62c0065bbc16e2901a281",
          "body": null,
          "is_bot": false,
          "headline": "fix: review comments",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-06T07:13:11Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a3310c71b6d3899e076b6d6d81e65ebda1149b07",
          "body": null,
          "is_bot": false,
          "headline": "fix: test names for external CI workflows",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-06T06:58:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "f6734143a592dbf6a2945fb3608d61cc8ec34bcd",
          "body": null,
          "is_bot": false,
          "headline": "fix: update Readme",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-06T06:58:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d576b5ba47e0a59263628b4a605dfa8ffa15512c",
          "body": "chore(main): release 1.6.0",
          "is_bot": false,
          "headline": "Merge pull request #66 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-05T12:31:33Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b6c5f9aba48055aad7202b241d4b5e62340616a7",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.6.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-03-05T12:26:13Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "55f0845aef05c7d066dc7fc5f7ebd2ed38f38340",
          "body": "fix: added missing conf option",
          "is_bot": false,
          "headline": "Merge pull request #65 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-05T12:25:55Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9884a99e691cae9aa5c5c1415466f3ac580e1620",
          "body": null,
          "is_bot": false,
          "headline": "fix: updated license",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-05T12:07:45Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "205f6fdb5dd5ae465971cf1368d06be483392b03",
          "body": null,
          "is_bot": false,
          "headline": "feat: attempt to replace individual GH workflows with reusable ones",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-03-05T11:53:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "7e37bc8b9b4a8c8c7dd970bc1705e9bbd9626a34",
          "body": null,
          "is_bot": false,
          "headline": "fix: added missing conf option",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-02-17T14:44:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "56a60e9cee05bee085f23e7b7f3ef9c425b88720",
          "body": "chore(main): release 1.5.5",
          "is_bot": false,
          "headline": "Merge pull request #64 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-02-11T08:43:10Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "009442749308cdf5341c309591ac6d22bdb305d6",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.5",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2026-02-11T08:41:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4561ea7f96568ecd0665ce2877d1ea34ef019dab",
          "body": "fix: update actions workflows",
          "is_bot": false,
          "headline": "Merge pull request #63 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-02-11T08:41:29Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3498d513631928b0b56774d707bfbcccd38be41",
          "body": "Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>",
          "is_bot": false,
          "headline": "fix: simplify regex",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-02-11T08:28:53Z",
          "body_truncated": false,
          "is_coding_agent": true
        },
        {
          "oid": "a89b8de4160666e33d96de3203009f04c4008407",
          "body": null,
          "is_bot": false,
          "headline": "fix: update actions workflows",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2026-02-11T07:55:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ff31c8f60ab406ad59842f5d9339d1d39c26e5d2",
          "body": "chore(main): release 1.5.4",
          "is_bot": false,
          "headline": "Merge pull request #60 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T10:33:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5ba390dfc9d3228d98f1ece490b6ef66899af539",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.4",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2025-11-14T09:58:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0333ebbde1222c2176eb3b273f4f1192663db288",
          "body": "fix: removed pushing a tagged container, only using latest",
          "is_bot": false,
          "headline": "Merge pull request #62 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T09:58:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e36c6c8448d26a538eeec4094a50882a5595d9bb",
          "body": null,
          "is_bot": false,
          "headline": "fix: removed pushing a tagged container, only using latest",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T09:57:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0a6572defefe524450862d2d6734e26aa1c49e1e",
          "body": "fix: more tag parsing",
          "is_bot": false,
          "headline": "Merge pull request #61 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T09:37:56Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3b36cdbce7e21ae4fc57b1dbecb040333c604d67",
          "body": null,
          "is_bot": false,
          "headline": "fix: more tag parsing",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T09:36:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "534c18d304af19a42121d9c1a939333b08e82320",
          "body": "fix: another attempt to trigger on release and extract correct tag",
          "is_bot": false,
          "headline": "Merge pull request #59 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T08:54:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e221191e3cb5950200a9ff610731a20510ac3e8c",
          "body": null,
          "is_bot": false,
          "headline": "fix: another attempt to trigger on release and extract correct tag",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-14T08:45:07Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3678c3f135d566b2ebf8a8aee9d1e614e565d36f",
          "body": "chore(main): release 1.5.3",
          "is_bot": false,
          "headline": "Merge pull request #58 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:32:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "bc2a69a7af6b9c3bde44a75bf4b570d06c5cc758",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.3",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2025-11-13T15:31:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "09f0432cf983393ae3bbd55b620784f999599a2f",
          "body": "fix: workflow trigger on release and tag",
          "is_bot": false,
          "headline": "Merge pull request #57 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:31:17Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5475f4152c38ff6f987f031d7d8b7ed0558f8e42",
          "body": null,
          "is_bot": false,
          "headline": "fix: workflow trigger on release and tag",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:30:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9eb66302b072a35510f2e535347ae82865ea9658",
          "body": "chore(main): release 1.5.2",
          "is_bot": false,
          "headline": "Merge pull request #51 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:17:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "42a60cb53ccf3ab2bd0ce4ac91967ea07cefc345",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.2",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2025-11-13T15:16:47Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ff8ef6f72176a03875134ba1b747a8c1d415df5e",
          "body": "fix: workflow trigger on release and tag",
          "is_bot": false,
          "headline": "Merge pull request #56 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:16:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4fd3251a3ac67e84b4d49b3474a28e9471806471",
          "body": null,
          "is_bot": false,
          "headline": "fix: workflow trigger on release and tag",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T15:13:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c58ab981fbbb222c1c8af1f6b1808bbb1869b705",
          "body": "fix: added write package permission to workflow",
          "is_bot": false,
          "headline": "Merge pull request #55 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T07:50:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a147e0b604e61a4b416c0383b0d1d981cc0ec34d",
          "body": null,
          "is_bot": false,
          "headline": "fix: added write package permission to workflow",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T07:48:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "db846c78dade795182fbb94c5092e381d66190c4",
          "body": "fix: lower case repo name",
          "is_bot": false,
          "headline": "Merge pull request #54 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T07:12:03Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cffe59bb43040f5b1c766c3d3a3426f62b7ec10a",
          "body": null,
          "is_bot": false,
          "headline": "fix: lower case repo name",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-13T07:10:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "65cbe9e84e534604f2f50e259b773df056730621",
          "body": "fix: added missing cores option",
          "is_bot": false,
          "headline": "Merge pull request #53 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T14:50:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9c4d86601fc545efa338d89df1edec69747f0a70",
          "body": null,
          "is_bot": false,
          "headline": "fix: further modifications to workflow",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T14:49:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cfe21bd0164037aed8bd5497e4aebf5b1cd63833",
          "body": null,
          "is_bot": false,
          "headline": "fix: added missing cores option",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T14:37:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "3adb000f1bc9242b60df414ed69355ff5c78dddd",
          "body": "fix: added apptainer source temporarily, switch to latest tag",
          "is_bot": false,
          "headline": "Merge pull request #52 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T14:29:16Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "641a57849d04a7b5d2d940a99612859b2a0b7001",
          "body": null,
          "is_bot": false,
          "headline": "fix: prevent failing when no NTC guide has any off targets",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T14:15:51Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b2e72a6ac3173fda6d7f39f3007c20149129b07c",
          "body": null,
          "is_bot": false,
          "headline": "fix: added apptainer source temporarily, switch to latest tag",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T12:57:14Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "1e24b24f971ffe32e5de945ea655a3ecda78f222",
          "body": "fix: apptainer trigger update",
          "is_bot": false,
          "headline": "Merge pull request #50 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T11:05:06Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "541fa6241203afa583fb432c203adbaf1eeed355",
          "body": null,
          "is_bot": false,
          "headline": "fix: apptainer trigger update",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-12T11:01:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "08e0da439da148f0ce438e6690204f2151069f3c",
          "body": "chore(main): release 1.5.1",
          "is_bot": false,
          "headline": "Merge pull request #49 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T13:48:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ad838c95c0364f4cd0da44eb318837a57caee111",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.1",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2025-11-04T13:42:20Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "89a8f2a942ee5e8737e07c3d94418a5f9497ac7e",
          "body": "fix: attempt to trigger apptainer wf",
          "is_bot": false,
          "headline": "Merge pull request #48 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T13:42:01Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "fb9dcb1d62e224c9e1deddb4e81dfe82d3d945be",
          "body": null,
          "is_bot": false,
          "headline": "fix: attempt to trigger apptainer wf",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T13:21:18Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d06516645b94c94fc81a0659b5ad7c8786206c94",
          "body": "chore(main): release 1.5.0",
          "is_bot": false,
          "headline": "Merge pull request #47 from MPUSP/release-please--branches--main",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T12:48:15Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "69b7f37224f3e661d0a58b152330a79bc975c0a3",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.5.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2025-11-04T12:47:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "aac8bc19bddfb19eb56acde23a56a12213420077",
          "body": "feat: minor actions and rules updates",
          "is_bot": false,
          "headline": "Merge pull request #46 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T12:47:31Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "86c5a9346eb36fb5333b7094800fdfb0adf0d5b7",
          "body": null,
          "is_bot": false,
          "headline": "feat: github actions workflow to automatically deploy apptainer to ghcr",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T12:36:36Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "9ab4cd56306a305b4f6387e44c53c59e50f54ca2",
          "body": null,
          "is_bot": false,
          "headline": "fix: cores for report",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-04T12:09:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "780489b514299d4e4cf83538d3cc3b880997beee",
          "body": null,
          "is_bot": false,
          "headline": "fix: enabled pulling of correct container image again",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-03T13:13:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ecbcdebfa7acb574f95b6d239ec1a41ee47bfbc2",
          "body": null,
          "is_bot": false,
          "headline": "update docs",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-03T13:00:40Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "da5e7e5b283e03e1aacc91c6ada1eadc3c6ba8de",
          "body": null,
          "is_bot": false,
          "headline": "fix: missing input for gh actions test",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-03T13:00:05Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ebdb4785601156e0b9cc51101286bb217e70b1d1",
          "body": null,
          "is_bot": false,
          "headline": "fix: updated rules, replaced 1 with wrapper",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-03T09:55:09Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "2912669b7f9243f06deb00983fb1537d103afcb3",
          "body": null,
          "is_bot": false,
          "headline": "fix: update github actions",
          "author_name": "m-jahn",
          "author_login": "m-jahn",
          "committed_at": "2025-11-03T07:21:49Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "aef5bcba69277ae7353f36fd1ae6952a8f54cab4",
          "body": "chore: release 1.4.0",
          "is_bot": false,
          "headline": "Merge pull request #45 from MPUSP/release-v1.4.0",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-16T09:00:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "175c4aff5bfe18d255ce7eae92c7ab2e6fb80a96",
          "body": null,
          "is_bot": true,
          "headline": "chore: release 1.4.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2024-12-16T08:59:46Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "28f769713bd3cd3faa94eba7c85c15bddd3d8245",
          "body": "feat: release v1.4.0",
          "is_bot": false,
          "headline": "Merge pull request #43 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-16T08:59:22Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "393ce3da9565368e23452d7193cee827c56addb6",
          "body": null,
          "is_bot": false,
          "headline": "fix: slight changes to report structure",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-16T07:40:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "b18aea310dbcdb4e00f2e454f88927c640fe8fa6",
          "body": null,
          "is_bot": false,
          "headline": "fix: updated GH actions status badge",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-13T13:59:52Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "cdc47ca78fc3c48d7caa7cbf74bbed9e2e156e3d",
          "body": null,
          "is_bot": false,
          "headline": "fix: update GH actions to latest versions",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-13T09:13:41Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "ed4d4c13bd946152a6814ad0a17d536f9e247721",
          "body": "…gularity; closes #41",
          "is_bot": false,
          "headline": "fix: update for snakemake 8 commands; removed 1 rule failing with sin…",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-13T09:03:34Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "a3d448b95e5ceb005163e06643dcf988997d6a72",
          "body": "…scripts for singularity compatibility, closes #42",
          "is_bot": false,
          "headline": "feat: added support for fasta export, moved utility function to main …",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-12-13T07:58:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0b484b4b228e90017505d40c1931ef0c3a830867",
          "body": "…ponents--snakemake-crispr-guides\n\nchore(main): release 1.3.0",
          "is_bot": false,
          "headline": "Merge pull request #33 from MPUSP/release-please--branches--main--com…",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-23T12:00:32Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "44cfb7ea6e0c5b0f8a647f311c1663a40c8fa67a",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.3.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2024-09-23T11:58:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "88b709316afcff0f7ad86cd8545c4d36dd6de66f",
          "body": "fix: minor changes to envs and bug fixes",
          "is_bot": false,
          "headline": "Merge pull request #39 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-23T11:58:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d893c6be7f7315646b835139756d68d5c58d9bba",
          "body": null,
          "is_bot": false,
          "headline": "fix: bump container version for next release",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-20T06:52:57Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "516a728c70af8e7c001851d6e10fafb85b00be88",
          "body": null,
          "is_bot": false,
          "headline": "feat: minor updates to README",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-20T06:47:28Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "0362a0bea66e1e38bdd698f489e2f7abdf27df70",
          "body": null,
          "is_bot": false,
          "headline": "fix: removed conda default channel from envs, closes #38",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-20T06:30:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "d26fc02b8384528373aad866434571225ea02512",
          "body": null,
          "is_bot": false,
          "headline": "fix: bug when restriction sites is NULL",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-09-20T06:29:21Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "735bb0bce2fe5a2a660a2f46a8d3bfbf3abac7ab",
          "body": "fix: smaller issues",
          "is_bot": false,
          "headline": "Merge pull request #37 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-08-26T08:59:48Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "675747d76d980f01514fb8d420dfb3312a12ca29",
          "body": null,
          "is_bot": false,
          "headline": "fix: handling restriction sites, closes #36",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-08-21T08:45:25Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "4ab8e6a86ab349fc58e1f1cc7c21701776602ea2",
          "body": "fix: minor issues",
          "is_bot": false,
          "headline": "Merge pull request #35 from MPUSP/dev",
          "author_name": "Rina Ahmed-Begrich",
          "author_login": "rabioinf",
          "committed_at": "2024-07-24T09:13:26Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "8b7b5bbf2da92c1733cf77eb35a90b68c5344a52",
          "body": null,
          "is_bot": false,
          "headline": "fix: minor issues, closes #34",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-06-10T10:33:02Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "5d78ac623f04918e5ac56e6fc6425a1f8fdb0f0c",
          "body": "feat: changed license to MIT, closes #30",
          "is_bot": false,
          "headline": "Merge pull request #32 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-04-11T08:38:00Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "c1627fb059252a07b2ce506a50be910e202c3dae",
          "body": null,
          "is_bot": false,
          "headline": "feat: changed license to MIT, closes #30",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-03-06T10:41:58Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "e3f0da64645c3520493d65475c0943799e8b69eb",
          "body": "…ponents--snakemake-crispr-guides\n\nchore(main): release 1.2.0",
          "is_bot": false,
          "headline": "Merge pull request #27 from MPUSP/release-please--branches--main--com…",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-02-21T07:57:59Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "64f105d07019bd3483594dd8d15ee4550fcc83b0",
          "body": null,
          "is_bot": true,
          "headline": "chore(main): release 1.2.0",
          "author_name": "github-actions[bot]",
          "author_login": "github-actions[bot]",
          "committed_at": "2024-02-21T07:49:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "eaea7ac6e23083fe07f7a3a7049eb5f28c56a93f",
          "body": "feat: various fixes for improved tiling function",
          "is_bot": false,
          "headline": "Merge pull request #29 from MPUSP/dev",
          "author_name": "Michael Jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-02-21T07:49:24Z",
          "body_truncated": false,
          "is_coding_agent": false
        },
        {
          "oid": "da7135cc0d92376e69047343280106a388fb9d44",
          "body": null,
          "is_bot": false,
          "headline": "fix: overhauled plotting of intergenic regions, closes #28",
          "author_name": "jahn",
          "author_login": "m-jahn",
          "committed_at": "2024-02-07T13:31:44Z",
          "body_truncated": false,
          "is_coding_agent": false
        }
      ],
      "releases_count": 16,
      "commits_last_year": 75,
      "latest_release_at": "2026-07-14T10:57:20Z",
      "latest_release_tag": "v1.7.2",
      "releases_from_tags": false,
      "days_since_last_push": 11,
      "active_weeks_last_year": 9,
      "days_since_latest_release": 11,
      "mean_days_between_releases": 28
    },
    "community": {
      "has_readme": true,
      "has_license": true,
      "has_description": true,
      "has_contributing": false,
      "health_percentage": 37,
      "has_issue_template": false,
      "has_code_of_conduct": false,
      "has_pull_request_template": false
    },
    "ecosystem": {
      "packages": []
    },
    "popularity": {
      "forks": 2,
      "stars": 8,
      "watchers": 1,
      "fork_history": {
        "days": [
          {
            "date": "2023-11-07",
            "count": 1
          },
          {
            "date": "2024-03-07",
            "count": 1
          }
        ],
        "complete": true,
        "collected": 2,
        "total_forks": 2
      },
      "star_history": null,
      "open_issues_and_prs": 1
    },
    "ai_readiness": {
      "has_nix": false,
      "example_dirs": [],
      "has_llms_txt": false,
      "has_dockerfile": false,
      "has_mcp_signal": false,
      "bootstrap_files": [],
      "api_schema_files": [],
      "has_devcontainer": false,
      "typecheck_configs": [],
      "toolchain_manifests": [],
      "largest_source_bytes": null,
      "source_files_sampled": 0,
      "oversized_source_files": 0,
      "agent_instruction_files": [],
      "agent_instruction_max_bytes": null
    },
    "dependencies": {
      "manifests": [],
      "advisories": {
        "error": "No resolved dependencies to assess",
        "scope": "repository_graph",
        "source": null,
        "findings": [],
        "collected": false,
        "malicious": [],
        "truncated": false,
        "by_severity": {},
        "advisory_count": 0,
        "affected_count": 0,
        "assessed_count": 0,
        "malicious_count": 0,
        "assessed_package": null,
        "unassessed_count": 0,
        "direct_affected_count": 0
      },
      "ecosystems": [],
      "dependencies": [],
      "all_dependencies": {
        "error": null,
        "source": "github-sbom",
        "packages": [],
        "collected": true,
        "truncated": false,
        "total_count": 0,
        "direct_count": 0,
        "indirect_count": 0
      }
    },
    "maintainership": {
      "issues": {
        "open_prs": 0,
        "merged_prs": 47,
        "open_issues": 1,
        "closed_ratio": 0.966,
        "closed_issues": 28,
        "closed_unmerged_prs": 3
      },
      "bus_factor": 1,
      "bot_contributors": 1,
      "top_contributors": [
        {
          "type": "User",
          "login": "m-jahn",
          "commits": 170,
          "avatar_url": "https://avatars.githubusercontent.com/u/32667667?v=4"
        },
        {
          "type": "User",
          "login": "rabioinf",
          "commits": 1,
          "avatar_url": "https://avatars.githubusercontent.com/u/21038107?v=4"
        }
      ],
      "contributors_sampled": 2,
      "top_contributor_share": 0.994
    },
    "quality_signals": {
      "has_ci": true,
      "has_tests": false,
      "ci_workflows": [
        "conventional-prs.yml",
        "deploy-apptainer.yml",
        "release-please.yml",
        "snakemake-tests.yml"
      ],
      "has_docs_dir": false,
      "linter_configs": [],
      "has_editorconfig": false,
      "has_linter_config": false,
      "has_precommit_config": false
    },
    "security_signals": {
      "lockfiles": [],
      "scorecard": {
        "checks": [
          {
            "name": "Binary-Artifacts",
            "score": 10,
            "reason": "no binaries found in the repo",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
          },
          {
            "name": "Branch-Protection",
            "score": 4,
            "reason": "branch protection is not maximal on development and all release branches",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
          },
          {
            "name": "CI-Tests",
            "score": 5,
            "reason": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
          },
          {
            "name": "CII-Best-Practices",
            "score": 0,
            "reason": "no effort to earn an OpenSSF best practices badge detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
          },
          {
            "name": "Code-Review",
            "score": 0,
            "reason": "Found 0/6 approved changesets -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
          },
          {
            "name": "Contributors",
            "score": 10,
            "reason": "project has 4 contributing companies or organizations",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
          },
          {
            "name": "Dangerous-Workflow",
            "score": 10,
            "reason": "no dangerous workflow patterns detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
          },
          {
            "name": "Dependency-Update-Tool",
            "score": 0,
            "reason": "no update tool detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
          },
          {
            "name": "Fuzzing",
            "score": 0,
            "reason": "project is not fuzzed",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
          },
          {
            "name": "License",
            "score": 10,
            "reason": "license file detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
          },
          {
            "name": "Maintained",
            "score": 8,
            "reason": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
          },
          {
            "name": "Packaging",
            "score": null,
            "reason": "packaging workflow not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
          },
          {
            "name": "Pinned-Dependencies",
            "score": 0,
            "reason": "dependency not pinned by hash detected -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
          },
          {
            "name": "SAST",
            "score": 0,
            "reason": "SAST tool is not run on all commits -- score normalized to 0",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
          },
          {
            "name": "Security-Policy",
            "score": 0,
            "reason": "security policy file not detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
          },
          {
            "name": "Signed-Releases",
            "score": null,
            "reason": "no releases found",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
          },
          {
            "name": "Token-Permissions",
            "score": 0,
            "reason": "detected GitHub workflow tokens with excessive permissions",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
          },
          {
            "name": "Vulnerabilities",
            "score": 10,
            "reason": "0 existing vulnerabilities detected",
            "documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
          }
        ],
        "commit": "8e6116a7eca3d8961510ac8c8522f86dae904a13",
        "ran_at": "2026-07-25T14:09:05Z",
        "aggregate_score": 4.4,
        "scorecard_version": "v5.5.0"
      },
      "has_codeql_workflow": false,
      "has_security_policy": false,
      "has_dependabot_config": false
    },
    "contribution_flow": {
      "collected": true,
      "ci_last_run_at": "2026-07-14T11:08:05Z",
      "oldest_open_prs": [],
      "last_merged_pr_at": "2026-07-14T10:57:11Z",
      "ci_last_conclusion": "SUCCESS",
      "oldest_open_issues": [
        {
          "number": 44,
          "created_at": "2024-12-13T14:08:18Z",
          "last_comment_at": "2025-12-11T10:38:26Z",
          "last_comment_author": "m-jahn"
        }
      ]
    }
  },
  "config": {
    "disabled_metrics": [],
    "disabled_categories": [],
    "disabled_components": {}
  },
  "source": {
    "url": "https://github.com/MPUSP/snakemake-crispr-guides",
    "host": "github.com",
    "name": "snakemake-crispr-guides",
    "owner": "MPUSP"
  },
  "metrics": {
    "overall": {
      "key": "overall",
      "band": "moderate",
      "name": "Overall health",
      "note": null,
      "notes": [],
      "value": 50,
      "inputs": {
        "security": 43,
        "vitality": 76,
        "community": 31,
        "governance": 52,
        "engineering": 44
      },
      "components": []
    },
    "categories": [
      {
        "key": "vitality",
        "band": "good",
        "name": "Vitality",
        "value": 76,
        "weight": 0.22,
        "metrics": [
          {
            "key": "development_activity",
            "band": "moderate",
            "name": "Development activity",
            "note": null,
            "notes": [],
            "value": 60,
            "inputs": {
              "commits_last_year": 75,
              "human_commit_share": 0.86,
              "days_since_last_push": 11,
              "active_weeks_last_year": 9
            },
            "components": [
              {
                "key": "push_recency",
                "name": "Push recency",
                "detail": "last push 11 days ago",
                "points": 28.8,
                "status": "partial",
                "details": [
                  {
                    "code": "push_recency",
                    "params": {
                      "days": 11
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_cadence",
                "name": "Commit cadence",
                "detail": "9/52 weeks with commits",
                "points": 6.2,
                "status": "partial",
                "details": [
                  {
                    "code": "commit_cadence_weeks",
                    "params": {
                      "weeks": 9
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "commit_volume",
                "name": "Commit volume",
                "detail": "75 commits in the last year",
                "points": 16.9,
                "status": "partial",
                "details": [
                  {
                    "code": "commits_last_year",
                    "params": {
                      "count": 75
                    }
                  }
                ],
                "max_points": 18
              },
              {
                "key": "openssf_scorecard_maintained",
                "name": "OpenSSF Scorecard: Maintained",
                "detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
                "points": 8,
                "status": "partial",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "release_discipline",
            "band": "excellent",
            "name": "Release discipline",
            "note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "openssf_scorecard_signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "releases_count": 16,
              "latest_release_tag": "v1.7.2",
              "releases_from_tags": false,
              "days_since_latest_release": 11,
              "mean_days_between_releases": 28
            },
            "components": [
              {
                "key": "ships_releases",
                "name": "Ships releases",
                "detail": "16 releases published",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "releases_published",
                    "params": {
                      "count": 16
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "release_recency",
                "name": "Release recency",
                "detail": "latest release 11 days ago",
                "points": 36,
                "status": "met",
                "details": [
                  {
                    "code": "release_recency",
                    "params": {
                      "days": 11
                    }
                  }
                ],
                "max_points": 36
              },
              {
                "key": "release_cadence",
                "name": "Release cadence",
                "detail": "a release every ~28 days",
                "points": 27,
                "status": "met",
                "details": [
                  {
                    "code": "release_cadence",
                    "params": {
                      "gap": 28
                    }
                  }
                ],
                "max_points": 27
              },
              {
                "key": "openssf_scorecard_signed_releases",
                "name": "OpenSSF Scorecard: Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 10
              }
            ]
          },
          {
            "key": "abandonment",
            "band": "excellent",
            "name": "Abandonment",
            "note": null,
            "notes": [],
            "value": 100,
            "inputs": {
              "cap": null,
              "state": "maintained",
              "guards": [],
              "signals": [],
              "red_flag": false,
              "multiplier_pct": 100,
              "declared_reason": null,
              "unverified_reason": null,
              "unanswered_open_prs": null,
              "unanswered_open_issues": null,
              "days_since_last_merged_pr": null,
              "days_since_last_human_commit": 11,
              "days_since_last_human_commit_is_floor": false
            },
            "components": [
              {
                "key": "project_is_still_maintained",
                "name": "Project is still maintained",
                "detail": "last human commit 11 days ago",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "abandonment_maintained",
                    "params": {
                      "days": 11
                    }
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Is the project alive — is code being written and are releases shipping?"
      },
      {
        "key": "community",
        "band": "at_risk",
        "name": "Community & Adoption",
        "value": 31,
        "weight": 0.18,
        "metrics": [
          {
            "key": "popularity",
            "band": "critical",
            "name": "Popularity & adoption",
            "note": null,
            "notes": [],
            "value": 14,
            "inputs": {
              "forks": 2,
              "stars": 8,
              "watchers": 1,
              "growth_state": "unverified",
              "growth_factor_pct": 100,
              "growth_unverified_reason": "no_history"
            },
            "components": [
              {
                "key": "stars",
                "name": "Stars",
                "detail": "8 stars",
                "points": 13.7,
                "status": "partial",
                "details": [
                  {
                    "code": "stars",
                    "params": {
                      "count": 8
                    }
                  }
                ],
                "max_points": 60
              },
              {
                "key": "forks",
                "name": "Forks",
                "detail": "2 forks",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "forks",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "watchers",
                "name": "Watchers",
                "detail": "1 watchers",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "watchers",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 15
              }
            ]
          },
          {
            "key": "community_health",
            "band": "moderate",
            "name": "Community health",
            "note": null,
            "notes": [],
            "value": 50,
            "inputs": {
              "has_readme": true,
              "has_license": true,
              "has_contributing": false,
              "has_issue_template": false,
              "has_code_of_conduct": false,
              "has_pull_request_template": false
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 22.5,
                "status": "met",
                "details": [],
                "max_points": 22.5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "recognized license (MIT)",
                "points": 22.5,
                "status": "met",
                "details": [
                  {
                    "code": "license_standard",
                    "params": {}
                  },
                  {
                    "code": "license_spdx",
                    "params": {
                      "spdx": "MIT"
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributing_guide",
                "name": "CONTRIBUTING guide",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "code_of_conduct",
                "name": "Code of conduct",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 13.5
              },
              {
                "key": "issue_template",
                "name": "Issue template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.2
              },
              {
                "key": "pr_template",
                "name": "PR template",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.3
              }
            ]
          }
        ],
        "description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
      },
      {
        "key": "governance",
        "band": "moderate",
        "name": "Sustainability & Governance",
        "value": 52,
        "weight": 0.24,
        "metrics": [
          {
            "key": "maintainer_resilience",
            "band": "critical",
            "name": "Maintainer resilience (bus factor)",
            "note": null,
            "notes": [],
            "value": 22,
            "inputs": {
              "bus_factor": 1,
              "contributors_sampled": 2,
              "top_contributor_share": 0.994
            },
            "components": [
              {
                "key": "bus_factor",
                "name": "Bus factor",
                "detail": "1 contributor(s) cover half of all commits",
                "points": 9,
                "status": "partial",
                "details": [
                  {
                    "code": "bus_factor",
                    "params": {
                      "count": 1
                    }
                  }
                ],
                "max_points": 54
              },
              {
                "key": "commit_distribution",
                "name": "Commit distribution",
                "detail": "top contributor authored 99% of commits",
                "points": 0.1,
                "status": "partial",
                "details": [
                  {
                    "code": "top_contributor_share",
                    "params": {
                      "share": 99
                    }
                  }
                ],
                "max_points": 22.5
              },
              {
                "key": "contributor_breadth",
                "name": "Contributor breadth",
                "detail": "2 contributors",
                "points": 2.7,
                "status": "partial",
                "details": [
                  {
                    "code": "contributors_sampled",
                    "params": {
                      "count": 2
                    }
                  }
                ],
                "max_points": 13.5
              },
              {
                "key": "openssf_scorecard_contributors",
                "name": "OpenSSF Scorecard: Contributors",
                "detail": "project has 4 contributing companies or organizations",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "responsiveness",
            "band": "good",
            "name": "Issue & PR responsiveness",
            "note": null,
            "notes": [],
            "value": 81,
            "inputs": {
              "merged_prs": 47,
              "open_issues": 1,
              "closed_issues": 28,
              "issue_closed_ratio": 0.966,
              "closed_unmerged_prs": 3
            },
            "components": [
              {
                "key": "issue_resolution",
                "name": "Issue resolution",
                "detail": "97% of issues closed",
                "points": 45.2,
                "status": "partial",
                "details": [
                  {
                    "code": "issues_closed_share",
                    "params": {
                      "share": 97
                    }
                  }
                ],
                "max_points": 46.75
              },
              {
                "key": "pr_acceptance",
                "name": "PR acceptance",
                "detail": "47/50 decided PRs merged",
                "points": 36,
                "status": "partial",
                "details": [
                  {
                    "code": "decided_prs_merged",
                    "params": {
                      "merged": 47,
                      "decided": 50
                    }
                  }
                ],
                "max_points": 38.25
              },
              {
                "key": "openssf_scorecard_code_review",
                "name": "OpenSSF Scorecard: Code-Review",
                "detail": "Found 0/6 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              }
            ]
          },
          {
            "key": "stewardship",
            "band": "moderate",
            "name": "Ownership & stewardship",
            "note": null,
            "notes": [],
            "value": 58,
            "inputs": {
              "followers": 10,
              "owner_type": "Organization",
              "is_verified": null,
              "owner_login": "MPUSP",
              "public_repos": 21,
              "account_age_days": 1942
            },
            "components": [
              {
                "key": "ownership_backing",
                "name": "Ownership backing",
                "detail": "organization-owned",
                "points": 30,
                "status": "met",
                "details": [
                  {
                    "code": "owner_organization",
                    "params": {}
                  }
                ],
                "max_points": 30
              },
              {
                "key": "verified_domain",
                "name": "Verified domain",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 20
              },
              {
                "key": "owner_reach",
                "name": "Owner reach",
                "detail": "10 followers of MPUSP",
                "points": 7.5,
                "status": "partial",
                "details": [
                  {
                    "code": "owner_followers",
                    "params": {
                      "count": 10,
                      "login": "MPUSP"
                    }
                  }
                ],
                "max_points": 25
              },
              {
                "key": "track_record",
                "name": "Track record",
                "detail": "21 public repos, account ~5 yr old",
                "points": 20.4,
                "status": "partial",
                "details": [
                  {
                    "code": "public_repos",
                    "params": {
                      "count": 21
                    }
                  },
                  {
                    "code": "account_age_years",
                    "params": {
                      "years": 5
                    }
                  }
                ],
                "max_points": 25
              }
            ]
          }
        ],
        "description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
      },
      {
        "key": "engineering",
        "band": "at_risk",
        "name": "Engineering Quality",
        "value": 44,
        "weight": 0.2,
        "metrics": [
          {
            "key": "engineering_practices",
            "band": "at_risk",
            "name": "Engineering practices",
            "note": null,
            "notes": [],
            "value": 34,
            "inputs": {
              "has_ci": true,
              "has_tests": false,
              "has_editorconfig": false,
              "has_linter_config": false,
              "has_precommit_config": false
            },
            "components": [
              {
                "key": "ci_workflows",
                "name": "CI workflows",
                "detail": "4 workflow(s)",
                "points": 24,
                "status": "met",
                "details": [
                  {
                    "code": "ci_workflows",
                    "params": {
                      "count": 4
                    }
                  }
                ],
                "max_points": 24
              },
              {
                "key": "tests_present",
                "name": "Tests present",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 24
              },
              {
                "key": "linter_config",
                "name": "Linter config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 16
              },
              {
                "key": "pre_commit_hooks",
                "name": "Pre-commit hooks",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 9.6
              },
              {
                "key": "editorconfig",
                "name": ".editorconfig",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 6.4
              },
              {
                "key": "openssf_scorecard_ci_tests",
                "name": "OpenSSF Scorecard: CI-Tests",
                "detail": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
                "points": 10,
                "status": "partial",
                "details": [],
                "max_points": 20
              }
            ]
          },
          {
            "key": "documentation",
            "band": "moderate",
            "name": "Documentation",
            "note": null,
            "notes": [],
            "value": 60,
            "inputs": {
              "topics": [
                "bioinformatics-pipeline",
                "crispr",
                "crispr-design",
                "guide-rna-library",
                "python3",
                "r-markdown",
                "snakemake",
                "workflow",
                "snakemake-workflow"
              ],
              "has_wiki": true,
              "homepage": null,
              "has_readme": true,
              "has_docs_dir": false,
              "has_description": true
            },
            "components": [
              {
                "key": "readme",
                "name": "README",
                "detail": null,
                "points": 30,
                "status": "met",
                "details": [],
                "max_points": 30
              },
              {
                "key": "documentation_directory",
                "name": "Documentation directory",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 25
              },
              {
                "key": "documentation_homepage_site",
                "name": "Documentation / homepage site",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "repository_description",
                "name": "Repository description",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "topics",
                "name": "Topics",
                "detail": "9 topics",
                "points": 10,
                "status": "met",
                "details": [
                  {
                    "code": "topics_count",
                    "params": {
                      "count": 9
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "wiki",
                "name": "Wiki",
                "detail": null,
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              }
            ]
          }
        ],
        "description": "Are baseline engineering and documentation practices in place?"
      },
      {
        "key": "security",
        "band": "at_risk",
        "name": "Security",
        "value": 43,
        "weight": 0.16,
        "metrics": [
          {
            "key": "security_posture",
            "band": "at_risk",
            "name": "Security posture",
            "note": "Excluded from scoring (no data or not applicable): Packaging, Signed-Releases. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "packaging",
                    "signed_releases"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 43,
            "inputs": {
              "source": "openssf_scorecard",
              "checks_evaluated": 16,
              "scorecard_version": "v5.5.0",
              "checks_inconclusive": 2,
              "scorecard_aggregate": 4.4
            },
            "components": [
              {
                "key": "binary_artifacts",
                "name": "Binary-Artifacts",
                "detail": "no binaries found in the repo",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "branch_protection",
                "name": "Branch-Protection",
                "detail": "branch protection is not maximal on development and all release branches",
                "points": 3,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "ci_tests",
                "name": "CI-Tests",
                "detail": "6 out of 12 merged PRs checked by a CI test -- score normalized to 5",
                "points": 1.2,
                "status": "partial",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "cii_best_practices",
                "name": "CII-Best-Practices",
                "detail": "no effort to earn an OpenSSF best practices badge detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "code_review",
                "name": "Code-Review",
                "detail": "Found 0/6 approved changesets -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "contributors",
                "name": "Contributors",
                "detail": "project has 4 contributing companies or organizations",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "dangerous_workflow",
                "name": "Dangerous-Workflow",
                "detail": "no dangerous workflow patterns detected",
                "points": 10,
                "status": "met",
                "details": [],
                "max_points": 10
              },
              {
                "key": "dependency_update_tool",
                "name": "Dependency-Update-Tool",
                "detail": "no update tool detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "fuzzing",
                "name": "Fuzzing",
                "detail": "project is not fuzzed",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "license",
                "name": "License",
                "detail": "license file detected",
                "points": 2.5,
                "status": "met",
                "details": [],
                "max_points": 2.5
              },
              {
                "key": "maintained",
                "name": "Maintained",
                "detail": "9 commit(s) and 1 issue activity found in the last 90 days -- score normalized to 8",
                "points": 6,
                "status": "partial",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "packaging",
                "name": "Packaging",
                "detail": "packaging workflow not detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 5
              },
              {
                "key": "pinned_dependencies",
                "name": "Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "sast",
                "name": "SAST",
                "detail": "SAST tool is not run on all commits -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "security_policy",
                "name": "Security-Policy",
                "detail": "security policy file not detected",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 5
              },
              {
                "key": "signed_releases",
                "name": "Signed-Releases",
                "detail": "no releases found",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_data",
                    "params": {}
                  }
                ],
                "max_points": 7.5
              },
              {
                "key": "token_permissions",
                "name": "Token-Permissions",
                "detail": "detected GitHub workflow tokens with excessive permissions",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 7.5
              },
              {
                "key": "vulnerabilities",
                "name": "Vulnerabilities",
                "detail": "0 existing vulnerabilities detected",
                "points": 7.5,
                "status": "met",
                "details": [],
                "max_points": 7.5
              }
            ]
          },
          {
            "key": "high_risk_jurisdiction_exposure",
            "band": "excellent",
            "name": "High-Risk Jurisdiction Exposure",
            "note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
            "notes": [
              {
                "code": "jurisdiction_evidence_limits",
                "params": {}
              }
            ],
            "value": 100,
            "inputs": {
              "meaning": "self-published location evidence; not nationality or citizenship",
              "red_flag": false,
              "exposures": [],
              "policy_countries": [
                "Russia",
                "Iran",
                "North Korea"
              ],
              "review_only_matches": 0,
              "assessed_self_published_locations": 5
            },
            "components": [
              {
                "key": "policy_exposure_multiplier",
                "name": "Policy exposure multiplier",
                "detail": "no confirmed policy-scope location match",
                "points": 100,
                "status": "met",
                "details": [
                  {
                    "code": "jurisdiction_no_match",
                    "params": {}
                  }
                ],
                "max_points": 100
              }
            ]
          }
        ],
        "description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
      },
      {
        "key": "ai_readiness",
        "band": "critical",
        "name": "AI Readiness",
        "value": 16,
        "weight": 0,
        "metrics": [
          {
            "key": "ai_agent_context",
            "band": "at_risk",
            "name": "Agent context & guidance",
            "note": null,
            "notes": [],
            "value": 40,
            "inputs": {
              "has_llms_txt": false,
              "legible_history_share": 0.977,
              "agent_instruction_files": [],
              "agent_instruction_max_bytes": null
            },
            "components": [
              {
                "key": "agent_instructions",
                "name": "Agent instructions",
                "detail": "no CLAUDE.md / AGENTS.md / editor rules",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_agent_instructions",
                    "params": {}
                  }
                ],
                "max_points": 45
              },
              {
                "key": "machine_readable_docs_llms_txt",
                "name": "Machine-readable docs (llms.txt)",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 15
              },
              {
                "key": "legible_commit_history",
                "name": "Legible commit history",
                "detail": "84 of 86 human commits state their intent (structured subject or explanatory body)",
                "points": 40,
                "status": "met",
                "details": [
                  {
                    "code": "legible_history",
                    "params": {
                      "legible": 84,
                      "sampled": 86
                    }
                  }
                ],
                "max_points": 40
              }
            ]
          },
          {
            "key": "ai_verify_loop",
            "band": "critical",
            "name": "Verify loop (build / test / typecheck)",
            "note": null,
            "notes": [],
            "value": 4,
            "inputs": {
              "has_nix": false,
              "has_tests": false,
              "lockfiles": [],
              "has_dockerfile": false,
              "typed_language": false,
              "bootstrap_files": [],
              "has_devcontainer": false,
              "has_linter_config": false,
              "typecheck_configs": [],
              "agent_commit_share": 0.02,
              "toolchain_manifests": [],
              "dependency_bot_commit_share": 0
            },
            "components": [
              {
                "key": "one_command_bootstrap",
                "name": "One-command bootstrap",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 18
              },
              {
                "key": "automated_tests",
                "name": "Automated tests",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 22
              },
              {
                "key": "lint_format_config",
                "name": "Lint / format config",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "static_type_checking",
                "name": "Static type checking",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 11
              },
              {
                "key": "reproducible_environment",
                "name": "Reproducible environment",
                "detail": null,
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              },
              {
                "key": "demonstrated_agent_practice",
                "name": "Demonstrated agent practice",
                "detail": "2 of the last 100 commits agent-authored or agent-credited",
                "points": 4,
                "status": "partial",
                "details": [
                  {
                    "code": "agent_authored_commits",
                    "params": {
                      "count": 2,
                      "sampled": 100
                    }
                  }
                ],
                "max_points": 10
              },
              {
                "key": "automated_maintenance",
                "name": "Automated maintenance",
                "detail": "no automated dependency updates observed",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_dependency_automation",
                    "params": {}
                  }
                ],
                "max_points": 8
              },
              {
                "key": "openssf_scorecard_pinned_dependencies",
                "name": "OpenSSF Scorecard: Pinned-Dependencies",
                "detail": "dependency not pinned by hash detected -- score normalized to 0",
                "points": 0,
                "status": "missed",
                "details": [],
                "max_points": 10
              }
            ]
          },
          {
            "key": "ai_code_legibility",
            "band": "critical",
            "name": "Code legibility for models",
            "note": "Excluded from scoring (no data or not applicable): Manageable file sizes. Remaining weights renormalized.",
            "notes": [
              {
                "code": "excluded_no_data",
                "params": {
                  "components": [
                    "manageable_file_sizes"
                  ]
                }
              },
              {
                "code": "weights_renormalized",
                "params": {}
              }
            ],
            "value": 1,
            "inputs": {
              "primary_language": "R",
              "largest_source_bytes": null,
              "source_files_sampled": 0,
              "oversized_source_files": 0
            },
            "components": [
              {
                "key": "type_checkable_code",
                "name": "Type-checkable code",
                "detail": "R without a type-check config",
                "points": 0,
                "status": "missed",
                "details": [
                  {
                    "code": "no_typecheck_config_language",
                    "params": {
                      "language": "R"
                    }
                  }
                ],
                "max_points": 45
              },
              {
                "key": "manageable_file_sizes",
                "name": "Manageable file sizes",
                "detail": "no source files detected",
                "points": 0,
                "status": "excluded",
                "details": [
                  {
                    "code": "no_source_files",
                    "params": {}
                  }
                ],
                "max_points": 55
              }
            ]
          }
        ],
        "description": "How well is the repo equipped to be developed and maintained with AI coding agents? An independent, experimental badge — weight 0.0, so it is surfaced on its own and does not affect the overall health score."
      }
    ],
    "metrics_version": "1.13.0"
  },
  "warnings": [
    "Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token"
  ],
  "report_type": "repository",
  "generated_at": "2026-07-25T14:09:20.250969Z",
  "schema_version": "0.27.0",
  "badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/m/MPUSP/snakemake-crispr-guides.svg",
  "full_name": "MPUSP/snakemake-crispr-guides",
  "license_state": "standard",
  "license_spdx": "MIT"
}

Оцінки — це сигнали, а не гарантії. Вони відображають публічно видимі практики на GitHub — це не аудит коду й не гарантія безпеки.

Відсутні дані виключаються, а ваги перенормовуються — нуль за відсутність ніколи не ставиться. Методологія версіонована й відкрита: метрики v1.13.0, схема v0.27.0 — повна методологія · вікі метрик.

Як окремий результат виглядає на тлі всього реєстру: сукупна статистика.