原始 JSON 报告 机器可读
{
"data": {
"icon": {
"bytes": 1298188,
"width": 5000,
"height": 5000,
"rejected": [
{
"url": "https://raw.githubusercontent.com/artic-network/artic-doc/refs/heads/main/images/viruses/sars-cov-2_icon.svg",
"reason": "dimensions undeclared",
"source_type": "homepage"
},
{
"url": "https://artic.network/images/favicon.ico",
"reason": "too small (16x16)",
"source_type": "homepage"
},
{
"url": "https://artic.network/favicon.ico",
"reason": "HTTP 404",
"source_type": "homepage"
}
],
"collected": true,
"media_type": "image/png",
"source_url": "https://raw.githubusercontent.com/artic-network/fieldbioinformatics/master/docs/artic-logo.png?raw=true?",
"source_type": "readme",
"content_hash": "0cd6213e32a206e2d259dd32597fba75206d6b05bb9c6588a487fbd3b4f9b394",
"candidates_considered": 4
},
"repo": {
"topics": [],
"is_fork": true,
"size_kb": 4331,
"has_wiki": true,
"homepage": "https://artic.network/",
"languages": {
"R": 1157,
"Shell": 4142,
"Python": 299252,
"Makefile": 1976,
"Dockerfile": 788
},
"pushed_at": "2026-07-16T14:20:41Z",
"created_at": "2018-02-26T14:37:14Z",
"owner_type": "Organization",
"updated_at": "2026-07-30T02:04:31Z",
"description": "The ARTIC fieldbioinformatics pipeline",
"is_archived": false,
"is_disabled": false,
"license_spdx": "MIT",
"default_branch": "master",
"license_spdx_raw": "MIT",
"primary_language": "Python",
"significant_languages": [
"Python"
]
},
"owner": {
"blog": "http://artic.network",
"name": "ARTICnetwork",
"type": "Organization",
"login": "artic-network",
"company": null,
"location": null,
"followers": 81,
"avatar_url": "https://avatars.githubusercontent.com/u/30041437?v=4",
"created_at": "2017-07-10T08:45:32Z",
"is_verified": null,
"public_repos": 56,
"account_age_days": 3312
},
"license": {
"state": "standard",
"spdx_id": "MIT",
"raw_spdx": "MIT",
"file_present": true,
"scorecard_found": true,
"profile_has_license": false
},
"activity": {
"releases": [
{
"tag": "v1.11.1",
"kind": "patch",
"published_at": "2026-07-16T14:20:41Z"
},
{
"tag": "v1.11.0",
"kind": "minor",
"published_at": "2026-06-29T11:36:13Z"
},
{
"tag": "v1.10.3",
"kind": "patch",
"published_at": "2026-06-15T15:22:25Z"
},
{
"tag": "v1.10.2",
"kind": "patch",
"published_at": "2026-06-10T11:07:39Z"
},
{
"tag": "v1.10.1",
"kind": "patch",
"published_at": "2026-04-28T14:30:57Z"
},
{
"tag": "v1.10.0",
"kind": "minor",
"published_at": "2026-04-10T09:07:55Z"
},
{
"tag": "v1.9.1",
"kind": "patch",
"published_at": "2026-03-19T10:15:30Z"
},
{
"tag": "v1.9.0",
"kind": "minor",
"published_at": "2026-02-24T16:19:10Z"
},
{
"tag": "v1.8.5",
"kind": "patch",
"published_at": "2025-10-17T12:13:07Z"
},
{
"tag": "v1.8.4",
"kind": "patch",
"published_at": "2025-09-11T09:40:16Z"
},
{
"tag": "v1.8.3",
"kind": "patch",
"published_at": "2025-09-11T06:38:48Z"
},
{
"tag": "v1.8.2",
"kind": "patch",
"published_at": "2025-09-10T12:12:36Z"
},
{
"tag": "v1.8.1",
"kind": "patch",
"published_at": "2025-08-29T11:24:20Z"
},
{
"tag": "v1.8.0",
"kind": "minor",
"published_at": "2025-08-26T14:16:44Z"
},
{
"tag": "v1.7.5",
"kind": "patch",
"published_at": "2025-07-17T11:23:13Z"
},
{
"tag": "v1.7.4",
"kind": "patch",
"published_at": "2025-07-15T14:31:50Z"
},
{
"tag": "v1.7.3",
"kind": "patch",
"published_at": "2025-06-12T13:14:47Z"
},
{
"tag": "v1.7.2",
"kind": "patch",
"published_at": "2025-06-11T12:39:31Z"
},
{
"tag": "v1.7.1",
"kind": "patch",
"published_at": "2025-06-06T16:07:03Z"
},
{
"tag": "v1.7.0",
"kind": "minor",
"published_at": "2025-06-06T14:40:22Z"
},
{
"tag": "v1.6.5",
"kind": "patch",
"published_at": "2025-06-06T13:05:28Z"
},
{
"tag": "v1.6.4",
"kind": "patch",
"published_at": "2025-05-22T08:56:00Z"
},
{
"tag": "v1.6.3",
"kind": "patch",
"published_at": "2025-05-08T14:21:12Z"
},
{
"tag": "v1.6.2",
"kind": "patch",
"published_at": "2025-03-09T08:03:50Z"
},
{
"tag": "v1.6.1",
"kind": "patch",
"published_at": "2025-01-23T12:30:01Z"
},
{
"tag": "v1.6.0",
"kind": "minor",
"published_at": "2025-01-06T16:49:20Z"
},
{
"tag": "v1.5.8",
"kind": "patch",
"published_at": "2024-12-10T14:38:37Z"
},
{
"tag": "v1.5.7",
"kind": "patch",
"published_at": "2024-12-04T11:21:12Z"
},
{
"tag": "v1.5.6",
"kind": "patch",
"published_at": "2024-11-28T09:25:31Z"
},
{
"tag": "v1.5.5",
"kind": "patch",
"published_at": "2024-11-21T12:52:02Z"
},
{
"tag": "v1.5.4",
"kind": "patch",
"published_at": "2024-11-21T11:20:30Z"
},
{
"tag": "v1.5.3",
"kind": "patch",
"published_at": "2024-11-14T10:44:08Z"
},
{
"tag": "v1.5.2",
"kind": "patch",
"published_at": "2024-11-13T16:20:41Z"
},
{
"tag": "v1.5.1",
"kind": "patch",
"published_at": "2024-11-13T13:26:39Z"
},
{
"tag": "v1.2.4",
"kind": "patch",
"published_at": "2023-08-22T12:21:07Z"
},
{
"tag": "v1.2.3",
"kind": "patch",
"published_at": "2022-09-22T12:19:00Z"
},
{
"tag": "1.2.2",
"kind": "patch",
"published_at": "2022-02-23T14:15:53Z"
},
{
"tag": "1.2.1",
"kind": "patch",
"published_at": "2021-01-14T20:07:51Z"
},
{
"tag": "1.2.0",
"kind": "minor",
"published_at": "2021-01-12T14:49:29Z"
},
{
"tag": "1.1.3",
"kind": "patch",
"published_at": "2020-06-09T09:31:50Z"
},
{
"tag": "1.1.2",
"kind": "patch",
"published_at": "2020-06-03T15:30:31Z"
},
{
"tag": "1.1.1",
"kind": "patch",
"published_at": "2020-05-27T13:41:21Z"
},
{
"tag": "1.1.0-rc2",
"kind": "prerelease",
"published_at": "2020-04-15T14:10:01Z"
},
{
"tag": "1.1.0-rc",
"kind": "prerelease",
"published_at": "2020-03-30T10:52:50Z"
},
{
"tag": "v1.0.0",
"kind": "major",
"published_at": "2018-06-09T14:04:48Z"
}
],
"recent_commits": [
{
"oid": "5b2be2f6e06eab35ff01b0acee3f89b1547cb88c",
"body": "* Optimise guppyplex, ~10x speedup\n\n* Add memory optimisations\n\n* split large single FASTQs for parallelisation purposes\n\n* Make comments pithier\n\n* Version bump",
"is_bot": false,
"headline": "Optimise guppyplex, ~10x speedup (#196)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-07-16T14:20:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a27191473dd4d6167641401e61f3a56a1d5c008d",
"body": null,
"is_bot": false,
"headline": "Output new coverage reports from align_trim 1.2.0 (#194)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-06-29T11:26:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fa6ee3a32e8ed76e9f57466ac2315c233aa64970",
"body": "* Mask preconsensus hotfix\n\n* Fix VCF test mock",
"is_bot": false,
"headline": "Mask preconsensus hotfix (#193)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-06-15T15:21:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4577639dc2ac357748c80830d5c87fb3724587a9",
"body": "* Add v6.0.0 hac support and support new FQ header format\n\n* Add RG:Z to error message\n\n* Update docs and fix type incompatible union type in type hint",
"is_bot": false,
"headline": "Add v6.0.0 hac support and support new FQ header format (#191)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-06-10T11:06:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2f175cd3ebd9734254b8e951aefbf301c6012485",
"body": "* Make guppyplex ignore hidden files\n\n* Fix docker build action\n\n* Expose variant filtering thresholds and add discard logic for very low AF vars\n\n* Discard RefCall variants\n\n* Update commands doc to make variant filtering logic more clear\n\n* Add guppyplex tests\n\n* Modify variant parameter text, increase minimum clair3 version",
"is_bot": false,
"headline": "1.10.1 dev (#189)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-04-28T14:26:04Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8008b4c97c2193a82308ff6f0be507b1d9306e36",
"body": "* add new tests/clair3 models\n\n* get models pre unittests\n\n* fix get models in action\n\n* explicitly check for .pt files when checking for model existence\n\n* add more pytorch unit tests\n\n* Improve docs / make guppyplex multiprocessed\n\n* Add handling of spaced paths and a unit test for same\n\n* str(p) \n[…]\n on release\n\n* remove cyvcf2 dependency and reduce image size\n\n* Don't download all models every time\n\n* Update vcf_merge to sort CI fail\n\n* remove variant off by one error\n\n* Update clair3 models doc",
"is_bot": false,
"headline": "Pre 1.10.0 PR (#187)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-04-10T08:57:33Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "8cdf5cec2598bdd105117a38adc28735104c7e94",
"body": "* Optimise make_depth_mask for large bacterial genomes (e.g. TB)\n\nSwitch from pileup-centric to fetch-centric depth collection:\n- Use bamFile.fetch() so each read is processed once; get_tag(\"RG\") drops\n from O(ref_len × coverage) calls to O(num_reads)\n- Replace Python list depth arrays with numpy i\n[…]\n\n* Use direct BAM iteration instead of fetch() to avoid index requirement\n\n* Fall back to sequential BAM scan when no index is present\n\n* Add unit tests for collect_depths using synthetic BAM fixtures",
"is_bot": false,
"headline": "Optimise make depth mask (#185)",
"author_name": "Chris",
"author_login": "ChrisgKent",
"committed_at": "2026-04-08T12:05:29Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "8f5710cbe13f977b0afc413340e22cd7ee092c0b",
"body": null,
"is_bot": false,
"headline": "Restrict clair3 version to <2.0.0",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-03-19T09:44:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "fe4f3bd98e0fd1ca14f3bf7f22709771a62116fe",
"body": "* Add specific exit code handling logic\n\n* add system exit handling, move no length test to dengue\n\n* specify SC2 scheme length\n\n* move to subprocess instead of os system\n\n* version bump\n\n* improve memory error message\n\n* Improve syskill message\n\n* handle stderr invalid bytes better\n\n* only use the \n[…]\n\n\n* fix tests\n\n* use namespace for error handling test\n\n* print stderr for test debugging\n\n* don't run pytest with `-s`\n\n* captured stderr to stdout\n\n* use r941_prom_hac_g360+g422 clair3 model in test",
"is_bot": false,
"headline": "Error handling improvements (#181)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2026-02-24T16:17:12Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "2fb8abf66633a2a7e5a656b7bff516bb1a87fa36",
"body": null,
"is_bot": false,
"headline": "Properly determine whether deletions are inframe (1.8.5)",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-10-17T12:05:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3bfc3f42b926a91e7988b7eecdda409033b78835",
"body": null,
"is_bot": false,
"headline": "1.8.3 Push",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-09-11T09:31:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f6b919801c3575856b4d3a8fee0a538ba3dc5919",
"body": null,
"is_bot": false,
"headline": "1.8.3 push",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-09-11T06:29:33Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e268d5c0f82102ef66d920381abf34c6f2c38642",
"body": "* haploid sensitive\n\n* Add higher variant qual threshold for frameshifts\n\n* Add allele frequency filter\n\n* Update AF filter\n\n* Require higher frameshift variant qual\n\n* remove minor allele test variant\n\n* add clair3 --enable_variant_calling_at_sequence_head_and_tail arg\n\n* delete per pool primertrimmed BAMs",
"is_bot": false,
"headline": "1.8.2 PR (#177)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-09-10T12:11:38Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d904d64f2904f5d3226f55c0d3499b15f7cd9b8b",
"body": null,
"is_bot": false,
"headline": "Fix readme typo",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-09-03T13:43:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8914624f7286874157aa35e5d475dd4988c47c6b",
"body": null,
"is_bot": false,
"headline": "Update fieldbioinformatics SOP link",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-09-03T13:41:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "17af2be18a5c7e0723c6e52c0b1b2c97ddf731e2",
"body": "* Fix clair3 command\n\n* bump align_trim dependency version",
"is_bot": false,
"headline": "1.8.1 (#175)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-08-29T11:23:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0d1c901a1abaedad2650801787024abc6c3df72d",
"body": null,
"is_bot": false,
"headline": "Bump version from 1.7.5 to 1.8.0",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-08-26T14:14:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "390dedd10fc5e6add2ac94e88c2ce0ce182d2555",
"body": "* pivot to align_trim standalone\n\n* Reformat ituri scheme bed\n\n* Fix scheme bed formatting\n\n* Refactor bed file parsing to use primalbedtools\n\n* remove redundant scheme parsing unit test\n\n* Fix scheme parsing in minion workflow\n\n* Remove pandas dependency is mask.py\n\n* fix 3col bed parser",
"is_bot": false,
"headline": "1.8.0-dev (#173)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-08-26T11:52:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "697c51c2eafc3352cd13da8490030b6e1cf0d8a6",
"body": "* 1.7.4 push\n\n* Unify verbose progress messages, always include read_id\n\n* Fix segment nonetype bug\n\n* Fix leftover %\n\n* Improve clair3 model handling\n\n* Update valid command test\n\n* Switch over to pyproject.toml",
"is_bot": false,
"headline": "1.7.5 dev (#172)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-07-17T11:22:19Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "cf9992ef4e5ad37230a4d1437b12daf71bccb5dc",
"body": "* 1.7.4 push\n\n* Unify verbose progress messages, always include read_id\n\n* Fix segment nonetype bug\n\n* Fix leftover %",
"is_bot": false,
"headline": "1.7.4 PR (#170)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-07-15T14:30:21Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f4afa531107b019b170e6f90d29a4850d0975d20",
"body": "* Change to fasta header logic\n\n* Fix re-head logic, add primer mismatch testcase\n\n* Don't add caller to fasta header\n\n* fix allow mismatches test\n\n* provide model in allow mismatches test\n\n* Remove redundant clair3 calls",
"is_bot": false,
"headline": "1.7.3 PR (#169)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-06-12T13:14:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "82961422c1737ac2d15756bb3ac774254eb024d9",
"body": "* Change to fasta header logic\n\n* Fix re-head logic, add primer mismatch testcase\n\n* Don't add caller to fasta header\n\n* fix allow mismatches test\n\n* provide model in allow mismatches test",
"is_bot": false,
"headline": "1.7.2 PR (#168)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-06-11T12:35:57Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c7a78d1d5ac10016818f1fc0f3dd3f839d27e46c",
"body": null,
"is_bot": false,
"headline": "1.7.1 push",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-06-06T16:05:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4130c471f29d5af5754e0ed32d75dfc01d86409e",
"body": null,
"is_bot": false,
"headline": "Push segmented virus fixes (#166)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-06-06T14:38:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "103f94b0e703c9deb29ecb8e512e8812e516646c",
"body": null,
"is_bot": false,
"headline": "1.6.5 push",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-06-06T12:52:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5dee360d90bcbb74afe2f3130432a0b6e1cce13b",
"body": "* Support dorado v5.2.0 clair3 models\n\n* Account for model tarballs with mismatching top level dirs",
"is_bot": false,
"headline": "1.6.4 PR (#165)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-05-22T08:51:17Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "96f3057824d7806780ce0f00d1f22e83062cc586",
"body": null,
"is_bot": false,
"headline": "Add paired support to align_trim.py (#163)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-05-08T14:20:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87980b83c0b3aa59051f209ffd8579778dee3f92",
"body": null,
"is_bot": false,
"headline": "Update docs",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-03-31T10:14:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2685f4babfc8024f79f1eb84a32aca7842429502",
"body": null,
"is_bot": false,
"headline": "add .readthedocs.yaml",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2025-03-31T09:18:08Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "1e8912f9104e8e615449a456428bcd6fa64af6e8",
"body": "* Add linearise ref option\n\n* linearise fasta in validator\n\n* triple quotes around awk\n\n* escape newlines\n\n* add space after awk\n\n* Fix the awk\n\n* remove the awkward awk solution\n\n* 1.6.2 version bump",
"is_bot": false,
"headline": "1.6.2 PR [closes #160] (#161)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-03-09T07:48:18Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0bfb1c6cdfabbea884e8ad735f6e291326520039",
"body": null,
"is_bot": false,
"headline": "Reduce stale issues thresholds",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-02-12T12:12:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ab353f845d13e0ef2904b58f30ce8b3476dde02e",
"body": null,
"is_bot": false,
"headline": "Temporarily fix high --normalisation issue until maptide refactor (#157)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-23T12:29:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a60ede07695bf8d309a55ca0f69099cc7de39870",
"body": null,
"is_bot": false,
"headline": "Ignore enhancements when closing stale issues",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-08T11:39:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f76e50e63435333dd9500bb52dd2bec682884654",
"body": null,
"is_bot": false,
"headline": "Add improvement stale issue exemption",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-08T11:38:35Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a9f0566f22e6e42899d7df72d9d3f95261f7f1ce",
"body": null,
"is_bot": false,
"headline": "Remove redundant 1.4.0-dev from readme",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-07T10:14:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "93ce510b2f7361984ecd0a70ab624fb968571765",
"body": null,
"is_bot": false,
"headline": "1.6.0 Version Bump",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-06T16:41:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "94cc65daf89419340da35215b1f689245e155471",
"body": "* First test for multiref\r\n\r\n* Multiref changes\r\n\r\n* Fix align trim unit test\r\n\r\n* fix rehead fasta",
"is_bot": false,
"headline": "Add support for segmented genomes / amplicon panels (#146)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-06T16:41:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e86da8a28c70e8d6ef8ed7023c4f8c7868664315",
"body": null,
"is_bot": false,
"headline": "1.5.8 version bump",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2025-01-06T15:22:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "17c3a493bfa141cce32ac05a0490f0dc649274da",
"body": null,
"is_bot": false,
"headline": "Link to MPXV protocol instead of SC2",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2024-12-18T10:12:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "591a3b686f6e0293f5a14318f34cf45db04c6c8f",
"body": null,
"is_bot": false,
"headline": "Add seqtk dependency",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-12-10T14:38:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c00e5f3e19e18412802b9accc6d7c05381a8ba52",
"body": null,
"is_bot": false,
"headline": "Add clair3 pin",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-12-04T11:19:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "bc940d82eb756856cf21a7e10c1e7448e695a0fc",
"body": null,
"is_bot": false,
"headline": "1.5.7 Version Bump",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-12-04T11:17:45Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6054b5f7ef638f9d9a08e070a30e79e66a64bdb8",
"body": "… only artic-inrb-mpox) (#147)\n\n* First commit\r\n\r\n* make model dir if it doesn't exist\r\n\r\n* scheme length isn't an int",
"is_bot": false,
"headline": "Add reference selection functionality for multiref schemes (currently…",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2024-12-04T11:15:12Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "6cc5f5da064d66458485066c8577e4d38cf36899",
"body": "* Pre 1.5.6 push\r\n\r\n* Fix align_trim unit test\r\n\r\n* Remove verbose as a global arg\r\n\r\n* Fix minion validator test\r\n\r\n* Fix minion_validator again\r\n\r\n* Remove unused import",
"is_bot": false,
"headline": "1.5.6 PR (fixes #144) (#145)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2024-11-28T09:24:54Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a3e1df71a4e2b44b2b6440217646173d4ba867db",
"body": null,
"is_bot": false,
"headline": "remove vestigial pyfaidx pin",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-21T15:10:41Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e2e18e45a10d0680f1add064fdf87242a3433a93",
"body": null,
"is_bot": false,
"headline": "1.5.5 version bump",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-21T12:51:43Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "453a72db334fdad2642c322639adb0b0436641b1",
"body": null,
"is_bot": false,
"headline": "Mafft PR push (#143)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2024-11-21T12:51:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "06eb11c90ec61b19a2984d7784c0753ff0c7f4ae",
"body": null,
"is_bot": false,
"headline": "Version bump",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-21T11:19:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a0733e2bbaa05875bddf3265738e7c892aefb4c2",
"body": null,
"is_bot": false,
"headline": "Remove explicit platform tag from docker build",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-21T11:14:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "25cb3380bda5c23d31a1c8c2381b2a3e4e2415c7",
"body": null,
"is_bot": false,
"headline": "1.5.3 bump, fix --version",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-14T10:43:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "544fa2fa3b3765b0b8e841956d870dadb6c2222f",
"body": null,
"is_bot": false,
"headline": "Fix setup.cfg",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T16:19:48Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f8e69ca64fa3d6ec3f1177d2aec1d9e6646bb7e9",
"body": null,
"is_bot": false,
"headline": "Changes to shrink dockerfile / version bump",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T16:13:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c913b7d8c1cf8843e3d43ecd476239cdc86fb1bf",
"body": null,
"is_bot": false,
"headline": "Re-add conda to readme",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T16:10:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8257a1f7331b91af18e6c7bc0af38177681fc525",
"body": null,
"is_bot": false,
"headline": "Update entrypoints",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T15:44:51Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "70886a18255e688654d1c30191ece23a5ce94ad0",
"body": null,
"is_bot": false,
"headline": "Update setup.cfg python requirement",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T15:26:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b9f485e8e88cfd98cc0d5ff53850ef15eb1a727d",
"body": null,
"is_bot": false,
"headline": "Fix docker build action",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T13:25:29Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e26292b979886b17957e705f5def5758710f638d",
"body": null,
"is_bot": false,
"headline": "Add docker image badge",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T13:10:55Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "35b8d64955b26536f2781de3813c355bc70ecabc",
"body": null,
"is_bot": false,
"headline": "Switch travis badge to gh actions",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T12:55:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a98b00cd2f6306806a618416cff0344934c99413",
"body": null,
"is_bot": false,
"headline": "Fix tests readme entry",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T12:51:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7bef2e2dc19c3fab4acf18ec9f10b9ce5300fb41",
"body": null,
"is_bot": false,
"headline": "Remove branch checkout from install readme",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2024-11-13T12:51:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f73ffd0e046fa55348eaf81bc9ade75d652d7395",
"body": "* 1.4.0 pre-release version (#135)\r\n\r\n* Deprecate old tools and black format\r\n\r\n* Support fragmented data\r\n\r\n* use new trim primer arg in minion\r\n\r\n* reverse the (revolting) primer position logic\r\n\r\n* Fix find primer logic\r\n\r\n* Improve the cursed report writer logic\r\n\r\n* explicitly named function ar\n[…]\non bump\r\n\r\n* properly put low quality variants in mask\r\n\r\n* 1.5.1 version bump\r\n\r\n* Update vcf filtering and clair3 command\r\n\r\n---------\r\n\r\nCo-authored-by: Rachel Colquhoun <rachel.colquhoun@ed.ac.uk>",
"is_bot": false,
"headline": "Version 1.5.1 Release (#137)",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2024-11-13T12:36:47Z",
"body_truncated": true,
"is_coding_agent": false
},
{
"oid": "314f52bcdd22faf827b7471086e97c196cc38c8f",
"body": null,
"is_bot": false,
"headline": "1.2.4 version bump",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2023-08-22T12:20:05Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c47f4f1cd7180ccf8cd2de88da28e2b2cddd4e50",
"body": null,
"is_bot": false,
"headline": "Update medaka version",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2023-08-22T12:19:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ae337bf3519ebe691603690467d279c2c61ef4cb",
"body": "Update vcftagprimersites.py",
"is_bot": false,
"headline": "Merge pull request #123 from mattloose/patch-1",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2023-08-22T10:17:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "b44cdb5483cda88bf189150b03ab9a07c6d858a8",
"body": "Will actually provide the intended error if LEFT/RIGHT is not found in the bed file rather than current behaviour.",
"is_bot": false,
"headline": "Update vcftagprimersites.py",
"author_name": "mattloose",
"author_login": "mattloose",
"committed_at": "2022-11-29T16:24:22Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8eb6a0c619030b137f8c97545aa1b763b94446db",
"body": "Add note about flexible channel priority",
"is_bot": false,
"headline": "Update README.md",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2022-11-09T14:22:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "feff44a7936d85be899c356fc79506771eca9e9e",
"body": null,
"is_bot": false,
"headline": "Fix minor typo",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2022-09-22T12:38:02Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "763427a6090bd987052ac7abbd7bd2b01ec8d6a8",
"body": null,
"is_bot": false,
"headline": "Update version.py",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2022-09-22T12:11:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "52493c138ad2a617041231edee2225d8ad4c1847",
"body": null,
"is_bot": false,
"headline": "update environment yml to fix pyvcf bug",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2022-09-22T12:01:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "98241267d65eb76a98d11f3e41b6aeb71da68253",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2022-07-25T12:24:01Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "416bcc610f3ef9f2835577933ef52310d1d11d1c",
"body": null,
"is_bot": false,
"headline": "Belated version bump",
"author_name": "Sam W",
"author_login": "BioWilko",
"committed_at": "2022-06-29T10:37:46Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a30c6e596449134556aafbcaceca8f51408c98d1",
"body": "v1.2.2",
"is_bot": false,
"headline": "Merge pull request #104 from BioWilko/1.2.2-dev",
"author_name": "nickloman",
"author_login": "nickloman",
"committed_at": "2022-02-23T12:33:40Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "dc0a2876790d5f0987f662c986e3e71d03f184f1",
"body": null,
"is_bot": false,
"headline": "properly raise network exception error",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2022-02-11T15:48:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "a25f81bc5e6a3b65b9b2af23508e158697fa4ed7",
"body": null,
"is_bot": false,
"headline": "ensure that latest_scheme is not arbitrarily named",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2022-02-11T15:32:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "4f558d6a1de94dde004b94981b697f2908b487f4",
"body": null,
"is_bot": false,
"headline": "Addressed SN comments",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2022-02-11T15:24:31Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f6a66abce991bdf5dfadd5c429520978dda41d9f",
"body": null,
"is_bot": false,
"headline": "re-implemented scheme downloader in python",
"author_name": "Biowilko",
"author_login": "BioWilko",
"committed_at": "2022-02-11T11:11:13Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "23a8460f5b881c5b2712c0381e0ec4dc84d38359",
"body": "patch 1.2.0 > 1.2.1",
"is_bot": false,
"headline": "Merge pull request #68 from artic-network/1.3.0-dev",
"author_name": "nickloman",
"author_login": "nickloman",
"committed_at": "2021-01-14T20:02:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "90cc68c624d0f592f82bc16d3fbf0fc03356f731",
"body": null,
"is_bot": false,
"headline": "patching version",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-14T16:45:15Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "2fbca84f949124a09f9d6cf7bd0e24c374eacb4f",
"body": null,
"is_bot": false,
"headline": "updating docs",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-14T16:44:32Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "3c5be02bf047f85a8b75cbd02a07a5ef4df62284",
"body": null,
"is_bot": false,
"headline": "replacing artic multiqc fork with the vanilla one in the dep list",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-14T16:44:20Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "c71804db9c2bd9e4a369b6dec34d09f0636f5253",
"body": null,
"is_bot": false,
"headline": "fixing strict issue where vcf is not indexed",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-14T16:43:49Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "206cb43b93ae7cdd54b01e87c51fa3ec16e2573f",
"body": "…sed to then feed multiqc",
"is_bot": false,
"headline": "adding code to produce stats from align_trim and vcf_check reports, u…",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-14T16:43:28Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d5a0cb89ec46ecc9b738a3674f5575e74e5a9966",
"body": "Final changes for 1.2.0",
"is_bot": false,
"headline": "Merge pull request #67 from artic-network/symposiumRelease",
"author_name": "Will Rowe",
"author_login": null,
"committed_at": "2021-01-12T14:40:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f5cbba9427fed2f6040d19358df490e8b48478e6",
"body": null,
"is_bot": false,
"headline": "make --medaka-model a required flag if --medaka set",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-12T13:52:07Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "5661e761d17de1a4e0dd365ca4901a827c75e8ea",
"body": null,
"is_bot": false,
"headline": "updating doc to explicitly state minion_model needs to be set correctly",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-12T13:25:52Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "0208d5e0aac8f37617d486570f1319f2e6f26dee",
"body": null,
"is_bot": false,
"headline": "version bump",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-12T13:15:39Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "7d2c0222d92ed835cf3998c8c4d64946679d49cc",
"body": null,
"is_bot": false,
"headline": "deprecating plot_amplicon_depth script in favour of multiqc report",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-12T13:15:09Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ea69e3aef1cffca154ad3deb70cc0d2424bde300",
"body": null,
"is_bot": false,
"headline": "adding multiqc artic fork to env",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2021-01-12T13:02:36Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "9111543f629d5b87f90544601b73de18aace6390",
"body": "Optional longshot, optional overlap screening and optional primer scheme download/checking",
"is_bot": false,
"headline": "Merge pull request #60 from will-rowe/medaka-annotate",
"author_name": "nickloman",
"author_login": "nickloman",
"committed_at": "2020-12-16T12:56:27Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "ef856f7c813b7a69b4660cdd122cf6273d71b1ef",
"body": null,
"is_bot": false,
"headline": "removing glob from pytest as it fails with new filechecking",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-12-15T11:17:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "092a237b256a674e123d4415c6ebfbb3d500413d",
"body": null,
"is_bot": false,
"headline": "changing default scheme location to current directory",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-12-15T10:21:53Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "f9ed10404920db133791d0741a2bb62f8d9894f1",
"body": null,
"is_bot": false,
"headline": "checking input read-file exists at the start of the pipeline",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-12-15T10:21:30Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "d677d66fcfd4b15ca911114125695c3395e83beb",
"body": null,
"is_bot": false,
"headline": "bumping artic-tools to v0.2.6",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-12-02T12:31:58Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "8ac4e2c7260269aeb1c718611ed8a1ee71ae9185",
"body": null,
"is_bot": false,
"headline": "medaka not available for osx, doh - rolling back to 1.0.3",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-11-27T12:11:00Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "55c576ca1ce047bac5be4f2b94b2cc39392d9405",
"body": "updating scheme downloader to store them in expected locations",
"is_bot": false,
"headline": "updating artic-tools commands to exclude primer sites in overlap calcs",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-11-27T11:17:59Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "87a5b197bc7fdd53cfffb507b6b46d713def046e",
"body": null,
"is_bot": false,
"headline": "bumping artic-tools version and medaka version",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-11-27T11:16:37Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e0ccee553ee684a61e1593166487e2d44bf6abfb",
"body": null,
"is_bot": false,
"headline": "Update README.md",
"author_name": "Will Rowe",
"author_login": null,
"committed_at": "2020-09-30T08:22:23Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e486adba61e7ed3c6da6b29d5536dcd59f9265e5",
"body": null,
"is_bot": false,
"headline": "bumping artic-tools version",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-09-09T08:20:03Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "039d26c1b4d62547b9bed64cd866f199d17f1ac6",
"body": null,
"is_bot": false,
"headline": "adding align_trim figure",
"author_name": "Will Rowe",
"author_login": null,
"committed_at": "2020-09-08T13:44:11Z",
"body_truncated": false,
"is_coding_agent": false
},
{
"oid": "e093732849c95ede41c9daf657f0cac3aa71122e",
"body": null,
"is_bot": false,
"headline": "enabling opt flag setting per sample/workflow in validator",
"author_name": "Will Rowe",
"author_login": "will-rowe",
"committed_at": "2020-09-08T13:07:46Z",
"body_truncated": false,
"is_coding_agent": false
}
],
"releases_count": 45,
"commits_last_year": 18,
"latest_release_at": "2026-07-16T14:20:41Z",
"latest_release_tag": "v1.11.1",
"releases_from_tags": false,
"days_since_last_push": 19,
"active_weeks_last_year": 12,
"days_since_latest_release": 19,
"mean_days_between_releases": 34.2
},
"artifacts": {
"collected": true,
"structure": [
"tree.dockerfile"
],
"declarations": [
{
"name": "artic",
"path": "artic/deprecated/setup.py",
"tokens": [
"pypi.console_scripts"
],
"ecosystem": "pypi"
},
{
"name": "artic",
"path": "pyproject.toml",
"tokens": [
"pypi.console_scripts"
],
"ecosystem": "pypi"
}
]
},
"community": {
"has_readme": false,
"has_license": false,
"readme_badges": {
"hosts": [
"github.com",
"readthedocs.org",
"shields.io"
],
"total": 4,
"header": 4,
"collected": true,
"has_inspect_badge": false
},
"has_description": false,
"has_contributing": false,
"health_percentage": null,
"has_issue_template": false,
"has_code_of_conduct": false,
"has_pull_request_template": false
},
"ecosystem": {
"packages": []
},
"popularity": {
"forks": 71,
"stars": 135,
"watchers": 13,
"fork_history": {
"days": [
{
"date": "2019-03-11",
"count": 1
},
{
"date": "2019-04-29",
"count": 1
},
{
"date": "2020-03-09",
"count": 1
},
{
"date": "2020-03-23",
"count": 1
},
{
"date": "2020-03-24",
"count": 1
},
{
"date": "2020-04-05",
"count": 1
},
{
"date": "2020-04-13",
"count": 1
},
{
"date": "2020-04-17",
"count": 1
},
{
"date": "2020-05-08",
"count": 1
},
{
"date": "2020-05-19",
"count": 1
},
{
"date": "2020-05-26",
"count": 1
},
{
"date": "2020-07-02",
"count": 1
},
{
"date": "2020-07-28",
"count": 1
},
{
"date": "2020-07-29",
"count": 1
},
{
"date": "2020-08-05",
"count": 1
},
{
"date": "2020-09-10",
"count": 1
},
{
"date": "2020-10-15",
"count": 1
},
{
"date": "2021-01-12",
"count": 1
},
{
"date": "2021-02-19",
"count": 2
},
{
"date": "2021-04-06",
"count": 1
},
{
"date": "2021-05-13",
"count": 1
},
{
"date": "2021-05-31",
"count": 1
},
{
"date": "2021-06-05",
"count": 1
},
{
"date": "2021-06-10",
"count": 1
},
{
"date": "2021-07-06",
"count": 1
},
{
"date": "2021-07-15",
"count": 1
},
{
"date": "2021-08-03",
"count": 1
},
{
"date": "2021-10-11",
"count": 1
},
{
"date": "2021-10-18",
"count": 1
},
{
"date": "2021-12-03",
"count": 1
},
{
"date": "2021-12-14",
"count": 1
},
{
"date": "2022-01-03",
"count": 1
},
{
"date": "2022-01-14",
"count": 1
},
{
"date": "2022-01-20",
"count": 1
},
{
"date": "2022-01-21",
"count": 1
},
{
"date": "2022-02-11",
"count": 1
},
{
"date": "2022-02-16",
"count": 1
},
{
"date": "2022-02-24",
"count": 1
},
{
"date": "2022-03-04",
"count": 1
},
{
"date": "2022-03-14",
"count": 1
},
{
"date": "2022-03-18",
"count": 1
},
{
"date": "2022-03-21",
"count": 1
},
{
"date": "2022-05-05",
"count": 1
},
{
"date": "2022-05-10",
"count": 1
},
{
"date": "2022-06-14",
"count": 1
},
{
"date": "2022-06-20",
"count": 1
},
{
"date": "2022-06-23",
"count": 1
},
{
"date": "2022-06-29",
"count": 1
},
{
"date": "2022-08-09",
"count": 1
},
{
"date": "2022-08-17",
"count": 1
},
{
"date": "2022-08-26",
"count": 1
},
{
"date": "2022-10-24",
"count": 1
},
{
"date": "2022-11-22",
"count": 1
},
{
"date": "2022-11-26",
"count": 1
},
{
"date": "2022-11-29",
"count": 1
},
{
"date": "2022-12-20",
"count": 1
},
{
"date": "2022-12-27",
"count": 1
},
{
"date": "2023-03-17",
"count": 1
},
{
"date": "2023-04-28",
"count": 1
},
{
"date": "2023-07-21",
"count": 1
},
{
"date": "2023-08-08",
"count": 1
},
{
"date": "2023-09-25",
"count": 1
},
{
"date": "2024-04-23",
"count": 1
},
{
"date": "2024-07-10",
"count": 1
},
{
"date": "2025-03-10",
"count": 1
},
{
"date": "2025-04-03",
"count": 1
},
{
"date": "2025-06-22",
"count": 1
},
{
"date": "2025-07-01",
"count": 1
},
{
"date": "2025-10-13",
"count": 1
},
{
"date": "2026-02-15",
"count": 1
}
],
"complete": true,
"collected": 71,
"total_forks": 71
},
"star_history": null,
"open_issues_and_prs": 3
},
"ai_readiness": {
"has_nix": false,
"example_dirs": [],
"has_llms_txt": false,
"has_dockerfile": true,
"has_mcp_signal": false,
"bootstrap_files": [],
"api_schema_files": [],
"has_devcontainer": false,
"typecheck_configs": [],
"toolchain_manifests": [],
"largest_source_bytes": 37619,
"source_files_sampled": 83,
"oversized_source_files": 0,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"dependencies": {
"manifests": [
"pyproject.toml"
],
"advisories": {
"error": null,
"scope": null,
"source": null,
"findings": [],
"collected": false,
"malicious": [],
"truncated": false,
"by_severity": {},
"advisory_count": 0,
"affected_count": 0,
"assessed_count": 0,
"malicious_count": 0,
"assessed_package": null,
"unassessed_count": 0,
"direct_affected_count": 0
},
"ecosystems": [
"pypi"
],
"dependencies": [],
"all_dependencies": {
"error": "GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository",
"source": null,
"packages": [],
"collected": false,
"truncated": false,
"total_count": null,
"direct_count": null,
"indirect_count": null
}
},
"maintainership": {
"issues": {
"open_prs": 0,
"merged_prs": 69,
"open_issues": 3,
"closed_ratio": 0.971,
"closed_issues": 102,
"closed_unmerged_prs": 22
},
"bus_factor": 2,
"bot_contributors": 0,
"top_contributors": [
{
"type": "User",
"login": "nickloman",
"commits": 242,
"avatar_url": "https://avatars.githubusercontent.com/u/116577?v=4"
},
{
"type": "User",
"login": "will-rowe",
"commits": 177,
"avatar_url": "https://avatars.githubusercontent.com/u/5321233?v=4"
},
{
"type": "User",
"login": "BioWilko",
"commits": 73,
"avatar_url": "https://avatars.githubusercontent.com/u/29129175?v=4"
},
{
"type": "User",
"login": "rpoplawski0",
"commits": 30,
"avatar_url": "https://avatars.githubusercontent.com/u/19431274?v=4"
},
{
"type": "User",
"login": "sagrudd",
"commits": 14,
"avatar_url": "https://avatars.githubusercontent.com/u/3848500?v=4"
},
{
"type": "User",
"login": "rambaut",
"commits": 11,
"avatar_url": "https://avatars.githubusercontent.com/u/686405?v=4"
},
{
"type": "User",
"login": "trvrb",
"commits": 9,
"avatar_url": "https://avatars.githubusercontent.com/u/1176109?v=4"
},
{
"type": "User",
"login": "gkarthik",
"commits": 9,
"avatar_url": "https://avatars.githubusercontent.com/u/798263?v=4"
},
{
"type": "User",
"login": "jts",
"commits": 4,
"avatar_url": "https://avatars.githubusercontent.com/u/389535?v=4"
},
{
"type": "User",
"login": "ChrisgKent",
"commits": 1,
"avatar_url": "https://avatars.githubusercontent.com/u/68433726?v=4"
}
],
"contributors_sampled": 11,
"top_contributor_share": 0.424
},
"quality_signals": {
"has_ci": true,
"has_tests": true,
"ci_workflows": [
"docker-build-push.yml",
"stale-issues.yml",
"unittests.yml"
],
"has_docs_dir": true,
"linter_configs": [],
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"security_signals": {
"lockfiles": [],
"scorecard": {
"checks": [
{
"name": "Binary-Artifacts",
"score": 10,
"reason": "no binaries found in the repo",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#binary-artifacts"
},
{
"name": "Branch-Protection",
"score": 0,
"reason": "branch protection not enabled on development/release branches",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#branch-protection"
},
{
"name": "CI-Tests",
"score": 6,
"reason": "13 out of 19 merged PRs checked by a CI test -- score normalized to 6",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#ci-tests"
},
{
"name": "CII-Best-Practices",
"score": 0,
"reason": "no effort to earn an OpenSSF best practices badge detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#cii-best-practices"
},
{
"name": "Code-Review",
"score": 1,
"reason": "Found 3/30 approved changesets -- score normalized to 1",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#code-review"
},
{
"name": "Contributors",
"score": 10,
"reason": "project has 26 contributing companies or organizations",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#contributors"
},
{
"name": "Dangerous-Workflow",
"score": 10,
"reason": "no dangerous workflow patterns detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dangerous-workflow"
},
{
"name": "Dependency-Update-Tool",
"score": 0,
"reason": "no update tool detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#dependency-update-tool"
},
{
"name": "Fuzzing",
"score": 0,
"reason": "project is not fuzzed",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#fuzzing"
},
{
"name": "License",
"score": 10,
"reason": "license file detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#license"
},
{
"name": "Maintained",
"score": 6,
"reason": "4 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 6",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#maintained"
},
{
"name": "Packaging",
"score": 10,
"reason": "packaging workflow detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#packaging"
},
{
"name": "Pinned-Dependencies",
"score": 0,
"reason": "dependency not pinned by hash detected -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#pinned-dependencies"
},
{
"name": "SAST",
"score": 0,
"reason": "SAST tool is not run on all commits -- score normalized to 0",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#sast"
},
{
"name": "Security-Policy",
"score": 0,
"reason": "security policy file not detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#security-policy"
},
{
"name": "Signed-Releases",
"score": null,
"reason": "no releases found",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#signed-releases"
},
{
"name": "Token-Permissions",
"score": 0,
"reason": "detected GitHub workflow tokens with excessive permissions",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#token-permissions"
},
{
"name": "Vulnerabilities",
"score": 10,
"reason": "0 existing vulnerabilities detected",
"documentation_url": "https://github.com/ossf/scorecard/blob/c395761df6afe1a69e476bc60a013a94bcbc153f/docs/checks.md#vulnerabilities"
}
],
"commit": "5b2be2f6e06eab35ff01b0acee3f89b1547cb88c",
"ran_at": "2026-08-05T08:23:13Z",
"aggregate_score": 4.3,
"scorecard_version": "v5.5.0"
},
"has_codeql_workflow": false,
"has_security_policy": false,
"has_dependabot_config": false
},
"contribution_flow": {
"collected": true,
"recent_prs": {
"merged_7d": 0,
"decided_7d": 0,
"merged_30d": 1,
"authors_30d": 1,
"decided_30d": 1,
"sample_size": 60,
"window_days": 30,
"sample_exhausted": false,
"authors_probed_30d": 1,
"newcomer_merged_30d": 0,
"bot_prs_excluded_30d": 0,
"newcomer_authors_30d": 0,
"newcomer_decided_30d": 0
},
"ci_last_run_at": "2026-08-05T04:36:21Z",
"oldest_open_prs": [],
"last_merged_pr_at": "2026-07-16T14:20:08Z",
"ci_last_conclusion": "SUCCESS",
"oldest_open_issues": [
{
"number": 152,
"created_at": "2025-01-08T11:41:30Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 153,
"created_at": "2025-01-08T11:46:15Z",
"last_comment_at": null,
"last_comment_author": null
},
{
"number": 197,
"created_at": "2026-07-29T05:44:36Z",
"last_comment_at": "2026-07-29T12:38:10Z",
"last_comment_author": "BioWilko"
}
]
}
},
"config": {
"disabled_metrics": [],
"disabled_categories": [],
"disabled_components": {}
},
"source": {
"url": "https://github.com/artic-network/fieldbioinformatics",
"host": "github.com",
"name": "fieldbioinformatics",
"owner": "artic-network"
},
"metrics": {
"overall": {
"key": "overall",
"band": "moderate",
"name": "Overall health",
"note": "The weighted overall 57 is calibrated to 60 on the published index scale (record calibration 2026-08-02).",
"notes": [
{
"code": "overall_calibration",
"params": {
"raw": 57,
"calibrated": 60,
"calibration": "2026-08-02"
}
}
],
"value": 60,
"inputs": {
"security": 43,
"vitality": 73,
"community": 42,
"governance": 68,
"calibration": "2026-08-02",
"engineering": 56,
"ai_readiness": 30,
"weighted_overall_raw": 57
},
"components": []
},
"categories": [
{
"key": "vitality",
"band": "good",
"name": "Vitality",
"value": 73,
"weight": 0.21,
"metrics": [
{
"key": "development_activity",
"band": "moderate",
"name": "Development activity",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"commits_last_year": 18,
"human_commit_share": 1,
"days_since_last_push": 19,
"active_weeks_last_year": 12
},
"components": [
{
"key": "push_recency",
"name": "Push recency",
"detail": "last push 19 days ago",
"points": 28.8,
"status": "partial",
"details": [
{
"code": "push_recency",
"params": {
"days": 19
}
}
],
"max_points": 36
},
{
"key": "commit_cadence",
"name": "Commit cadence",
"detail": "12/52 weeks with commits",
"points": 8.3,
"status": "partial",
"details": [
{
"code": "commit_cadence_weeks",
"params": {
"weeks": 12
}
}
],
"max_points": 36
},
{
"key": "commit_volume",
"name": "Commit volume",
"detail": "18 commits in the last year",
"points": 11.5,
"status": "partial",
"details": [
{
"code": "commits_last_year",
"params": {
"count": 18
}
}
],
"max_points": 18
},
{
"key": "openssf_scorecard_maintained",
"name": "OpenSSF Scorecard: Maintained",
"detail": "4 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 6",
"points": 6,
"status": "partial",
"details": [],
"max_points": 10
}
]
},
{
"key": "release_discipline",
"band": "exceptional",
"name": "Release discipline",
"note": "Excluded from scoring (no data or not applicable): OpenSSF Scorecard: Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"openssf_scorecard_signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 100,
"inputs": {
"releases_count": 45,
"latest_release_tag": "v1.11.1",
"releases_from_tags": false,
"days_since_latest_release": 19,
"mean_days_between_releases": 34.2
},
"components": [
{
"key": "ships_releases",
"name": "Ships releases",
"detail": "45 releases published",
"points": 27,
"status": "met",
"details": [
{
"code": "releases_published",
"params": {
"count": 45
}
}
],
"max_points": 27
},
{
"key": "release_recency",
"name": "Release recency",
"detail": "latest release 19 days ago",
"points": 36,
"status": "met",
"details": [
{
"code": "release_recency",
"params": {
"days": 19
}
}
],
"max_points": 36
},
{
"key": "release_cadence",
"name": "Release cadence",
"detail": "a release every ~34.2 days",
"points": 27,
"status": "met",
"details": [
{
"code": "release_cadence",
"params": {
"gap": 34.2
}
}
],
"max_points": 27
},
{
"key": "openssf_scorecard_signed_releases",
"name": "OpenSSF Scorecard: Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 10
}
]
},
{
"key": "abandonment",
"band": "exceptional",
"name": "Abandonment",
"note": null,
"notes": [],
"value": 100,
"inputs": {
"cap": null,
"state": "maintained",
"guards": [],
"signals": [],
"red_flag": false,
"multiplier_pct": 100,
"declared_reason": null,
"unverified_reason": null,
"unanswered_open_prs": null,
"unanswered_open_issues": null,
"days_since_last_merged_pr": null,
"days_since_last_human_commit": 19,
"days_since_last_human_commit_is_floor": false
},
"components": [
{
"key": "project_is_still_maintained",
"name": "Project is still maintained",
"detail": "last human commit 19 days ago",
"points": 100,
"status": "met",
"details": [
{
"code": "abandonment_maintained",
"params": {
"days": 19
}
}
],
"max_points": 100
}
]
}
],
"description": "Is the project alive — is code being written and are releases shipping?"
},
{
"key": "community",
"band": "weak",
"name": "Community & Adoption",
"value": 42,
"weight": 0.17,
"metrics": [
{
"key": "popularity",
"band": "moderate",
"name": "Popularity & adoption",
"note": null,
"notes": [],
"value": 56,
"inputs": {
"forks": 71,
"stars": 135,
"watchers": 13,
"growth_state": "unverified",
"growth_factor_pct": 100,
"growth_unverified_reason": "no_history"
},
"components": [
{
"key": "stars",
"name": "Stars",
"detail": "135 stars",
"points": 34.5,
"status": "partial",
"details": [
{
"code": "stars",
"params": {
"count": 135
}
}
],
"max_points": 60
},
{
"key": "forks",
"name": "Forks",
"detail": "71 forks",
"points": 15.4,
"status": "partial",
"details": [
{
"code": "forks",
"params": {
"count": 71
}
}
],
"max_points": 25
},
{
"key": "watchers",
"name": "Watchers",
"detail": "13 watchers",
"points": 6,
"status": "partial",
"details": [
{
"code": "watchers",
"params": {
"count": 13
}
}
],
"max_points": 15
}
]
},
{
"key": "community_health",
"band": "at_risk",
"name": "Community health",
"note": null,
"notes": [],
"value": 25,
"inputs": {
"has_readme": false,
"has_license": false,
"readme_badges": 4,
"has_contributing": false,
"has_issue_template": false,
"has_code_of_conduct": false,
"readme_badge_services": [
"github.com",
"readthedocs.org",
"shields.io"
],
"has_pull_request_template": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 22.5
},
{
"key": "license",
"name": "License",
"detail": "recognized license (MIT)",
"points": 22.5,
"status": "met",
"details": [
{
"code": "license_standard",
"params": {}
},
{
"code": "license_spdx",
"params": {
"spdx": "MIT"
}
}
],
"max_points": 22.5
},
{
"key": "contributing_guide",
"name": "CONTRIBUTING guide",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "code_of_conduct",
"name": "Code of conduct",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 13.5
},
{
"key": "issue_template",
"name": "Issue template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.2
},
{
"key": "pr_template",
"name": "PR template",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.3
}
]
}
],
"description": "Does the project have users, downloads, attention, and a welcoming setup for contributors?"
},
{
"key": "governance",
"band": "good",
"name": "Sustainability & Governance",
"value": 68,
"weight": 0.23,
"metrics": [
{
"key": "maintainer_resilience",
"band": "moderate",
"name": "Maintainer resilience (bus factor)",
"note": null,
"notes": [],
"value": 62,
"inputs": {
"bus_factor": 2,
"contributors_sampled": 11,
"top_contributor_share": 0.424
},
"components": [
{
"key": "bus_factor",
"name": "Bus factor",
"detail": "2 contributor(s) cover half of all commits",
"points": 25.2,
"status": "partial",
"details": [
{
"code": "bus_factor",
"params": {
"count": 2
}
}
],
"max_points": 54
},
{
"key": "commit_distribution",
"name": "Commit distribution",
"detail": "top contributor authored 42% of commits",
"points": 13,
"status": "partial",
"details": [
{
"code": "top_contributor_share",
"params": {
"share": 42
}
}
],
"max_points": 22.5
},
{
"key": "contributor_breadth",
"name": "Contributor breadth",
"detail": "11 contributors",
"points": 13.5,
"status": "met",
"details": [
{
"code": "contributors_sampled",
"params": {
"count": 11
}
}
],
"max_points": 13.5
},
{
"key": "openssf_scorecard_contributors",
"name": "OpenSSF Scorecard: Contributors",
"detail": "project has 26 contributing companies or organizations",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
},
{
"key": "responsiveness",
"band": "good",
"name": "Issue & PR responsiveness",
"note": "Excluded from scoring (no data or not applicable): Newcomer PR acceptance. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"newcomer_pr_acceptance"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 75,
"inputs": {
"merged_prs": 69,
"open_issues": 3,
"closed_issues": 102,
"prs_merged_7d": 0,
"prs_decided_7d": 0,
"prs_merged_30d": 1,
"prs_decided_30d": 1,
"issue_closed_ratio": 0.971,
"closed_unmerged_prs": 22,
"first_time_authors_30d": 0,
"first_time_prs_merged_30d": 0,
"first_time_prs_decided_30d": 0
},
"components": [
{
"key": "issue_resolution",
"name": "Issue resolution",
"detail": "97% of issues closed",
"points": 40.8,
"status": "partial",
"details": [
{
"code": "issues_closed_share",
"params": {
"share": 97
}
}
],
"max_points": 42
},
{
"key": "pr_acceptance",
"name": "PR acceptance",
"detail": "69/91 decided PRs merged",
"points": 22.7,
"status": "partial",
"details": [
{
"code": "decided_prs_merged",
"params": {
"merged": 69,
"decided": 91
}
}
],
"max_points": 30
},
{
"key": "newcomer_pr_acceptance",
"name": "Newcomer PR acceptance",
"detail": "no first-time contributor's PR decided in 30d",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_newcomer_prs",
"params": {
"days": 30
}
}
],
"max_points": 13
},
{
"key": "openssf_scorecard_code_review",
"name": "OpenSSF Scorecard: Code-Review",
"detail": "Found 3/30 approved changesets -- score normalized to 1",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 15
}
]
},
{
"key": "stewardship",
"band": "good",
"name": "Ownership & stewardship",
"note": null,
"notes": [],
"value": 69,
"inputs": {
"followers": 81,
"owner_type": "Organization",
"is_verified": null,
"owner_login": "artic-network",
"public_repos": 56,
"account_age_days": 3312
},
"components": [
{
"key": "ownership_backing",
"name": "Ownership backing",
"detail": "organization-owned",
"points": 30,
"status": "met",
"details": [
{
"code": "owner_organization",
"params": {}
}
],
"max_points": 30
},
{
"key": "verified_domain",
"name": "Verified domain",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 20
},
{
"key": "owner_reach",
"name": "Owner reach",
"detail": "81 followers of artic-network",
"points": 13.8,
"status": "partial",
"details": [
{
"code": "owner_followers",
"params": {
"count": 81,
"login": "artic-network"
}
}
],
"max_points": 25
},
{
"key": "track_record",
"name": "Track record",
"detail": "56 public repos, account ~9 yr old",
"points": 24.8,
"status": "partial",
"details": [
{
"code": "public_repos",
"params": {
"count": 56
}
},
{
"code": "account_age_years",
"params": {
"years": 9
}
}
],
"max_points": 25
}
]
}
],
"description": "Will the project survive its people — bus factor, responsiveness, who backs it, and package upkeep?"
},
{
"key": "engineering",
"band": "moderate",
"name": "Engineering Quality",
"value": 56,
"weight": 0.19,
"metrics": [
{
"key": "engineering_practices",
"band": "moderate",
"name": "Engineering practices",
"note": null,
"notes": [],
"value": 60,
"inputs": {
"has_ci": true,
"has_tests": true,
"has_editorconfig": false,
"has_linter_config": false,
"has_precommit_config": false
},
"components": [
{
"key": "ci_workflows",
"name": "CI workflows",
"detail": "3 workflow(s)",
"points": 24,
"status": "met",
"details": [
{
"code": "ci_workflows",
"params": {
"count": 3
}
}
],
"max_points": 24
},
{
"key": "tests_present",
"name": "Tests present",
"detail": null,
"points": 24,
"status": "met",
"details": [],
"max_points": 24
},
{
"key": "linter_config",
"name": "Linter config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 16
},
{
"key": "pre_commit_hooks",
"name": "Pre-commit hooks",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 9.6
},
{
"key": "editorconfig",
"name": ".editorconfig",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 6.4
},
{
"key": "openssf_scorecard_ci_tests",
"name": "OpenSSF Scorecard: CI-Tests",
"detail": "13 out of 19 merged PRs checked by a CI test -- score normalized to 6",
"points": 12,
"status": "partial",
"details": [],
"max_points": 20
}
]
},
{
"key": "documentation",
"band": "moderate",
"name": "Documentation",
"note": null,
"notes": [],
"value": 50,
"inputs": {
"topics": [],
"has_wiki": true,
"homepage": "https://artic.network/",
"has_readme": false,
"has_docs_dir": true,
"has_description": false
},
"components": [
{
"key": "readme",
"name": "README",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 30
},
{
"key": "documentation_directory",
"name": "Documentation directory",
"detail": null,
"points": 25,
"status": "met",
"details": [],
"max_points": 25
},
{
"key": "documentation_homepage_site",
"name": "Documentation / homepage site",
"detail": "https://artic.network/",
"points": 15,
"status": "met",
"details": [],
"max_points": 15
},
{
"key": "repository_description",
"name": "Repository description",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "topics",
"name": "Topics",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
},
{
"key": "wiki",
"name": "Wiki",
"detail": null,
"points": 10,
"status": "met",
"details": [],
"max_points": 10
}
]
}
],
"description": "Are baseline engineering and documentation practices in place?"
},
{
"key": "security",
"band": "weak",
"name": "Security",
"value": 43,
"weight": 0.16,
"metrics": [
{
"key": "security_posture",
"band": "weak",
"name": "Security posture",
"note": "Excluded from scoring (no data or not applicable): Signed-Releases. Remaining weights renormalized.",
"notes": [
{
"code": "excluded_no_data",
"params": {
"components": [
"signed_releases"
]
}
},
{
"code": "weights_renormalized",
"params": {}
}
],
"value": 43,
"inputs": {
"source": "openssf_scorecard",
"checks_evaluated": 17,
"scorecard_version": "v5.5.0",
"checks_inconclusive": 1,
"scorecard_aggregate": 4.3
},
"components": [
{
"key": "binary_artifacts",
"name": "Binary-Artifacts",
"detail": "no binaries found in the repo",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
},
{
"key": "branch_protection",
"name": "Branch-Protection",
"detail": "branch protection not enabled on development/release branches",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "ci_tests",
"name": "CI-Tests",
"detail": "13 out of 19 merged PRs checked by a CI test -- score normalized to 6",
"points": 1.5,
"status": "partial",
"details": [],
"max_points": 2.5
},
{
"key": "cii_best_practices",
"name": "CII-Best-Practices",
"detail": "no effort to earn an OpenSSF best practices badge detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 2.5
},
{
"key": "code_review",
"name": "Code-Review",
"detail": "Found 3/30 approved changesets -- score normalized to 1",
"points": 0.8,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "contributors",
"name": "Contributors",
"detail": "project has 26 contributing companies or organizations",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "dangerous_workflow",
"name": "Dangerous-Workflow",
"detail": "no dangerous workflow patterns detected",
"points": 10,
"status": "met",
"details": [],
"max_points": 10
},
{
"key": "dependency_update_tool",
"name": "Dependency-Update-Tool",
"detail": "no update tool detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "fuzzing",
"name": "Fuzzing",
"detail": "project is not fuzzed",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "license",
"name": "License",
"detail": "license file detected",
"points": 2.5,
"status": "met",
"details": [],
"max_points": 2.5
},
{
"key": "maintained",
"name": "Maintained",
"detail": "4 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 6",
"points": 4.5,
"status": "partial",
"details": [],
"max_points": 7.5
},
{
"key": "packaging",
"name": "Packaging",
"detail": "packaging workflow detected",
"points": 5,
"status": "met",
"details": [],
"max_points": 5
},
{
"key": "pinned_dependencies",
"name": "Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "sast",
"name": "SAST",
"detail": "SAST tool is not run on all commits -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "security_policy",
"name": "Security-Policy",
"detail": "security policy file not detected",
"points": 0,
"status": "missed",
"details": [],
"max_points": 5
},
{
"key": "signed_releases",
"name": "Signed-Releases",
"detail": "no releases found",
"points": 0,
"status": "excluded",
"details": [
{
"code": "no_data",
"params": {}
}
],
"max_points": 7.5
},
{
"key": "token_permissions",
"name": "Token-Permissions",
"detail": "detected GitHub workflow tokens with excessive permissions",
"points": 0,
"status": "missed",
"details": [],
"max_points": 7.5
},
{
"key": "vulnerabilities",
"name": "Vulnerabilities",
"detail": "0 existing vulnerabilities detected",
"points": 7.5,
"status": "met",
"details": [],
"max_points": 7.5
}
]
},
{
"key": "high_risk_jurisdiction_exposure",
"band": "exceptional",
"name": "High-Risk Jurisdiction Exposure",
"note": "Only high-confidence self-published location evidence affects this multiplier. Ambiguous matches are review-only; country evidence is not proof of nationality, citizenship, legal registration, malicious intent, or sanctions status.",
"notes": [
{
"code": "jurisdiction_evidence_limits",
"params": {}
}
],
"value": 100,
"inputs": {
"meaning": "self-published location evidence; not nationality or citizenship",
"red_flag": false,
"exposures": [],
"policy_countries": [
"Russia",
"Iran",
"North Korea"
],
"commit_weight_rule": {
"min_commits": 50,
"min_commit_share": 0.1
},
"review_only_matches": 0,
"below_threshold_exposures": [],
"assessed_self_published_locations": 13
},
"components": [
{
"key": "policy_exposure_multiplier",
"name": "Policy exposure multiplier",
"detail": "no confirmed policy-scope location match",
"points": 100,
"status": "met",
"details": [
{
"code": "jurisdiction_no_match",
"params": {}
}
],
"max_points": 100
}
]
}
],
"description": "Are visible security and supply-chain practices strong, with no malicious dependency and no unresolved high-risk jurisdiction exposure?"
},
{
"key": "ai_readiness",
"band": "at_risk",
"name": "AI Readiness",
"value": 30,
"weight": 0.04,
"metrics": [
{
"key": "ai_agent_context",
"band": "critical",
"name": "Agent context & guidance",
"note": null,
"notes": [],
"value": 16,
"inputs": {
"has_llms_txt": false,
"legible_history_share": 0.31,
"agent_instruction_files": [],
"agent_instruction_max_bytes": null
},
"components": [
{
"key": "agent_instructions",
"name": "Agent instructions",
"detail": "no CLAUDE.md / AGENTS.md / editor rules",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_instructions",
"params": {}
}
],
"max_points": 45
},
{
"key": "machine_readable_docs_llms_txt",
"name": "Machine-readable docs (llms.txt)",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 15
},
{
"key": "legible_commit_history",
"name": "Legible commit history",
"detail": "31 of 100 human commits state their intent (structured subject or explanatory body)",
"points": 16.5,
"status": "partial",
"details": [
{
"code": "legible_history",
"params": {
"legible": 31,
"sampled": 100
}
}
],
"max_points": 40
}
]
},
{
"key": "ai_verify_loop",
"band": "at_risk",
"name": "Verify loop (build / test / typecheck)",
"note": null,
"notes": [],
"value": 32,
"inputs": {
"has_nix": false,
"has_tests": true,
"lockfiles": [],
"has_dockerfile": true,
"typed_language": false,
"bootstrap_files": [],
"has_devcontainer": false,
"has_linter_config": false,
"typecheck_configs": [],
"agent_commit_share": 0,
"toolchain_manifests": [],
"dependency_bot_commit_share": 0
},
"components": [
{
"key": "one_command_bootstrap",
"name": "One-command bootstrap",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 18
},
{
"key": "automated_tests",
"name": "Automated tests",
"detail": null,
"points": 22,
"status": "met",
"details": [],
"max_points": 22
},
{
"key": "lint_format_config",
"name": "Lint / format config",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "static_type_checking",
"name": "Static type checking",
"detail": null,
"points": 0,
"status": "missed",
"details": [],
"max_points": 11
},
{
"key": "reproducible_environment",
"name": "Reproducible environment",
"detail": "Dockerfile",
"points": 10,
"status": "met",
"details": [
{
"code": "file_list",
"params": {
"files": "Dockerfile"
}
}
],
"max_points": 10
},
{
"key": "demonstrated_agent_practice",
"name": "Demonstrated agent practice",
"detail": "no agent-authored commits among the last 100",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_agent_authored_commits",
"params": {
"sampled": 100
}
}
],
"max_points": 10
},
{
"key": "automated_maintenance",
"name": "Automated maintenance",
"detail": "no automated dependency updates observed",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_dependency_automation",
"params": {}
}
],
"max_points": 8
},
{
"key": "openssf_scorecard_pinned_dependencies",
"name": "OpenSSF Scorecard: Pinned-Dependencies",
"detail": "dependency not pinned by hash detected -- score normalized to 0",
"points": 0,
"status": "missed",
"details": [],
"max_points": 10
}
]
},
{
"key": "ai_code_legibility",
"band": "moderate",
"name": "Code legibility for models",
"note": null,
"notes": [],
"value": 55,
"inputs": {
"primary_language": "Python",
"largest_source_bytes": 37619,
"source_files_sampled": 83,
"oversized_source_files": 0
},
"components": [
{
"key": "type_checkable_code",
"name": "Type-checkable code",
"detail": "Python without a type-check config",
"points": 0,
"status": "missed",
"details": [
{
"code": "no_typecheck_config_language",
"params": {
"language": "Python"
}
}
],
"max_points": 45
},
{
"key": "manageable_file_sizes",
"name": "Manageable file sizes",
"detail": "0/83 source files over 60KB",
"points": 55,
"status": "met",
"details": [
{
"code": "oversized_source_files",
"params": {
"kb": 60,
"sampled": 83,
"oversized": 0
}
}
],
"max_points": 55
}
]
}
],
"description": "How well is the repo equipped to be developed and maintained with AI coding agents? Carries a deliberately small weight: agent tooling is a real maintenance signal, but its absence must never gate the top of the scale (calibration saturates at raw 91, so 100/100 remains reachable with AI Readiness at zero)."
}
],
"classification": {
"top": [
"application"
],
"labels": [
"cli"
],
"scores": {
"cli": 10
},
"primary": "cli",
"evidence": [
{
"tier": "declared",
"label": "cli",
"source": "pypi.console_scripts",
"weight": 10
}
],
"artifacts": [
{
"path": "artic/deprecated/setup.py",
"labels": [
"cli"
],
"ecosystem": "pypi"
},
{
"path": "pyproject.toml",
"labels": [
"cli"
],
"ecosystem": "pypi"
}
],
"confidence": "high",
"host_extension": false,
"runs_as_process": true,
"consumed_by_code": false
},
"metrics_version": "2.5.0"
},
"warnings": [
"Star history unavailable: GitHub GraphQL error: Resource not accessible by personal access token",
"Community profile unavailable",
"Could not fetch pypi package 'artic' from its registry",
"GitHub dependency-graph SBOM unavailable (404); the dependency graph may be disabled for this repository"
],
"report_type": "repository",
"generated_at": "2026-08-05T08:23:31.095163Z",
"schema_version": "0.31.0",
"badge_url": "https://raw.githubusercontent.com/inspect-software/badges/main/v1/a/artic-network/fieldbioinformatics.svg",
"full_name": "artic-network/fieldbioinformatics",
"license_state": "standard",
"license_spdx": "MIT"
}