#computational-biology

Generate restraints to be used in HADDOCK

An agent that takes a dead research repo and turns it into a callable pipeline component.

A Go package for engineering organisms.

Working with molecular structures in pandas DataFrames

AI-ready biological data I/O, validation, and tokenization engine

AI-native tensor format (.ptt) for protein-structure ML. Convert a structure or sequence once; load backbone, MSA, ESM embeddings, sparse pair features, and ligands with zero parsing. Feeds AlphaFold/Boltz (Boltz-2 verified). Zarr-backed, lossless, PyTorch/JAX-ready, streams from S3/GCS.