PyPI
scverse/pertpy
Single-cell perturbation analysis
MITAug 24, 2026 · metrics 2.10.0
All tags
Catalogue tag
#computational-biology
Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.
18 records
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opensim-org/opensim-core
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Apache-2.0Oct 20, 2026 · metrics 2.10.0
PyPI
K-Dense-AI/scientific-agent-skills
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 190,000+ scientists worldwide. 165 ready-to-use validated skills plus 100+ scientific databases covering biology, chemistry, medicine, and drug discovery. Compatible with Cursor, Claude Code, Codex, Pi, Antigravity, and the open Agent Skills standard.
MITSep 16, 2026 · metrics 2.10.0
PyPI · crates.io
biotite-dev/biotite
A comprehensive library for computational molecular biology
BSD-3-ClauseAug 27, 2026 · metrics 2.10.0
PyPI · crates.io
zqfang/GSEApy
Gene Set Enrichment Analysis in Python
BSD-3-ClauseSep 18, 2026 · metrics 2.10.0
PyPI
cafferychen777/mLLMCelltype
Cell type annotation for single-cell RNA-seq using multi-LLM consensus
MITSep 15, 2026 · metrics 2.10.0
PyPI
AADavin/zombi2
A Python library for simulating the evolution of species, genomes, sequences and traits
MITSep 18, 2026 · metrics 2.10.0
PyPI
TimoLassmann/kalign
A fast multiple sequence alignment program.
Apache-2.0Sep 19, 2026 · metrics 2.10.0
PyPI
DoctorDean/lazarus
An agent that takes a dead research repo and turns it into a callable pipeline component.
MITSep 10, 2026 · metrics 2.10.0
PyPI
bioio-devs/aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
GPL-3.0Sep 19, 2026 · metrics 2.10.0
PyPI
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
BSD-3-ClauseSep 12, 2026 · metrics 2.10.0
crates.io
haddocking/haddock-restraints
Generate restraints to be used in HADDOCK
MITSep 9, 2026 · metrics 2.10.0
Go
bebop/poly
A Go package for engineering organisms.
MITSep 9, 2026 · metrics 2.10.0
crates.io · npm · PyPI
bio-rs/bio-rs
AI-ready biological data I/O, validation, and tokenization engine
Custom licenseSep 8, 2026 · metrics 2.10.0
PyPI
mooreneural/ProteinTensor
AI-native tensor format (.ptt) for structural biology ML. Convert a protein/nucleic-acid/ligand structure or sequence once; load backbone, MSA, ESM embeddings, sparse pair features, and ligand pockets with zero parsing. Feeds Boltz-2 (verified), AlphaFold 3, Chai-1, Nesso. Zarr-backed, PyTorch/JAX, streams from S3/GCS.
MITSep 8, 2026 · metrics 2.10.0
PyPI · npm
smartsbio/smarts-bio-jupyterlab
No repository description published.
MITSep 9, 2026 · metrics 2.10.0
PyPI
Kukuster/SumStatsRehab
GWAS summary statistics files QC tool
MITAug 23, 2026 · metrics 2.10.0
PyPI
chiffa/BioFlow
Information Flow Analysis toolkit for biological networks
Custom licenseSep 9, 2026 · metrics 2.10.0