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#computational-biology

Every repository in the public record carrying this tag — from its GitHub topics or the keywords its package registries publish. Health is measured under the same versioned methodology as the rest of the record.

10 records
Tagged “computational-biology”Ranked by health index
—
78Goodhealth index
opensim-org/opensim-core
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
C++★ 1,077↓ 0/moJul 14, 2026
Apache-2.0Jul 14, 2026 · metrics 1.13.0
PyPI · crates.io
71Goodhealth index
biotite-dev/biotite
A comprehensive library for computational molecular biology
Python · Rust★ 966↓ 5.2M/moJul 18, 2026
BSD-3-ClauseJul 18, 2026 · metrics 1.13.0
crates.io
57Moderatehealth index
haddocking/haddock-restraints
Generate restraints to be used in HADDOCK
Rust★ 6↓ 54/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
56Moderatehealth index
DoctorDean/lazarus
An agent that takes a dead research repo and turns it into a callable pipeline component.
Python★ 13↓ 375/moJul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
Go
56Moderatehealth index
TimOthYStIles/poly
A Go package for engineering organisms.
Go★ 731Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
55Moderatehealth index
BioPandas/biopandas
Working with molecular structures in pandas DataFrames
Python★ 756Jul 21, 2026
BSD-3-ClauseJul 21, 2026 · metrics 1.13.0
crates.io
53Moderatehealth index
bio-rs/bio-rs
AI-ready biological data I/O, validation, and tokenization engine
Rust · Python★ 3Jul 15, 2026
Custom licenseJul 15, 2026 · metrics 1.13.0
PyPI
53Moderatehealth index
mooreneural/proteintensor
AI-native tensor format (.ptt) for protein-structure ML. Convert a structure or sequence once; load backbone, MSA, ESM embeddings, sparse pair features, and ligands with zero parsing. Feeds AlphaFold/Boltz (Boltz-2 verified). Zarr-backed, lossless, PyTorch/JAX-ready, streams from S3/GCS.
Python★ 1Jul 15, 2026
MITJul 15, 2026 · metrics 1.13.0
PyPI · npm
40At riskhealth index
smartsbio/smarts-bio-jupyterlab
No repository description published.
TypeScript★ 1Jul 17, 2026
MITJul 17, 2026 · metrics 1.13.0
PyPI
32At riskhealth index
chiffa/bioflow
Information Flow Analysis toolkit for biological networks
Python★ 8↓ 271/moJul 17, 2026
Custom licenseJul 17, 2026 · metrics 1.13.0